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Items: 48


The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies.

Wang W, Das A, Kainer D, Schalamun M, Morales-Suarez A, Schwessinger B, Lanfear R.

Gigascience. 2020 Jan 1;9(1). pii: giz160. doi: 10.1093/gigascience/giz160.


Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics.

Irinyi L, Hu Y, Hoang MTV, Pasic L, Halliday C, Jayawardena M, Basu I, McKinney W, Morris AJ, Rathjen J, Stone E, Chen S, Sorrell TC, Schwessinger B, Meyer W.

Med Mycol. 2019 Nov 23. pii: myz109. doi: 10.1093/mmy/myz109. [Epub ahead of print]


Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.

Li F, Upadhyaya NM, Sperschneider J, Matny O, Nguyen-Phuc H, Mago R, Raley C, Miller ME, Silverstein KAT, Henningsen E, Hirsch CD, Visser B, Pretorius ZA, Steffenson BJ, Schwessinger B, Dodds PN, Figueroa M.

Nat Commun. 2019 Nov 7;10(1):5068. doi: 10.1038/s41467-019-12927-7.


Transposon-Mediated Horizontal Transfer of the Host-Specific Virulence Protein ToxA between Three Fungal Wheat Pathogens.

McDonald MC, Taranto AP, Hill E, Schwessinger B, Liu Z, Simpfendorfer S, Milgate A, Solomon PS.

mBio. 2019 Sep 10;10(5). pii: e01515-19. doi: 10.1128/mBio.01515-19.


On the value of preprints: An early career researcher perspective.

Sarabipour S, Debat HJ, Emmott E, Burgess SJ, Schwessinger B, Hensel Z.

PLoS Biol. 2019 Feb 21;17(2):e3000151. doi: 10.1371/journal.pbio.3000151. eCollection 2019 Feb.


Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity.

Liu F, McDonald M, Schwessinger B, Joe A, Pruitt R, Erickson T, Zhao X, Stewart V, Ronald PC.

Mol Plant Pathol. 2019 May;20(5):656-672. doi: 10.1111/mpp.12783. Epub 2019 Feb 18.


Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.

Wang W, Schalamun M, Morales-Suarez A, Kainer D, Schwessinger B, Lanfear R.

BMC Genomics. 2018 Dec 29;19(1):977. doi: 10.1186/s12864-018-5348-8.


Author Correction: Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling.

Perraki A, DeFalco TA, Derbyshire P, Avila J, Séré D, Sklenar J, Qi X, Stransfeld L, Schwessinger B, Kadota Y, Macho AP, Jiang S, Couto D, Torii KU, Menke FLH, Zipfel C.

Nature. 2018 Nov;563(7733):E30. doi: 10.1038/s41586-018-0663-4.


Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling.

Perraki A, DeFalco TA, Derbyshire P, Avila J, Séré D, Sklenar J, Qi X, Stransfeld L, Schwessinger B, Kadota Y, Macho AP, Jiang S, Couto D, Torii KU, Menke FLH, Zipfel C.

Nature. 2018 Sep;561(7722):248-252. doi: 10.1038/s41586-018-0471-x. Epub 2018 Sep 3. Erratum in: Nature. 2018 Oct 17;:.


Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora.

Schalamun M, Nagar R, Kainer D, Beavan E, Eccles D, Rathjen JP, Lanfear R, Schwessinger B.

Mol Ecol Resour. 2019 Jan;19(1):77-89. doi: 10.1111/1755-0998.12938. Epub 2018 Oct 5.


MinIONQC: fast and simple quality control for MinION sequencing data.

Lanfear R, Schalamun M, Kainer D, Wang W, Schwessinger B.

Bioinformatics. 2019 Feb 1;35(3):523-525. doi: 10.1093/bioinformatics/bty654.


The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to Xanthomonas oryzae pv. oryzae.

Thomas NC, Oksenberg N, Liu F, Caddell D, Nalyvayko A, Nguyen Y, Schwessinger B, Ronald PC.

PeerJ. 2018 May 9;6:e4456. doi: 10.7717/peerj.4456. eCollection 2018.


A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

Schwessinger B, Sperschneider J, Cuddy WS, Garnica DP, Miller ME, Taylor JM, Dodds PN, Figueroa M, Park RF, Rathjen JP.

mBio. 2018 Feb 20;9(1). pii: e02275-17. doi: 10.1128/mBio.02275-17.


De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

Miller ME, Zhang Y, Omidvar V, Sperschneider J, Schwessinger B, Raley C, Palmer JM, Garnica D, Upadhyaya N, Rathjen J, Taylor JM, Park RF, Dodds PN, Hirsch CD, Kianian SF, Figueroa M.

mBio. 2018 Feb 20;9(1). pii: e01650-17. doi: 10.1128/mBio.01650-17.


Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing.

Schwessinger B, Rathjen JP.

Methods Mol Biol. 2017;1659:49-57. doi: 10.1007/978-1-4939-7249-4_5.


Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity.

Singh V, Perraki A, Kim SY, Shrivastava S, Lee JH, Zhao Y, Schwessinger B, Oh MH, Marshall-Colon A, Zipfel C, Huber SC.

Front Plant Sci. 2017 Aug 2;8:1273. doi: 10.3389/fpls.2017.01273. eCollection 2017.


A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone.

Pruitt RN, Joe A, Zhang W, Feng W, Stewart V, Schwessinger B, Dinneny JR, Ronald PC.

New Phytol. 2017 Jul;215(2):725-736. doi: 10.1111/nph.14609. Epub 2017 May 30.


A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.

Pornsiriwong W, Estavillo GM, Chan KX, Tee EE, Ganguly D, Crisp PA, Phua SY, Zhao C, Qiu J, Park J, Yong MT, Nisar N, Yadav AK, Schwessinger B, Rathjen J, Cazzonelli CI, Wilson PB, Gilliham M, Chen ZH, Pogson BJ.

Elife. 2017 Mar 21;6. pii: e23361. doi: 10.7554/eLife.23361.


XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.

Thomas NC, Schwessinger B, Liu F, Chen H, Wei T, Nguyen YP, Shaker IWF, Ronald PC.

PeerJ. 2016 Sep 28;4:e2446. doi: 10.7717/peerj.2446. eCollection 2016.


Fundamental wheat stripe rust research in the 21st century.

Schwessinger B.

New Phytol. 2017 Mar;213(4):1625-1631. doi: 10.1111/nph.14159. Epub 2016 Aug 30. Review.


Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor.

Kohler AC, Chen LH, Hurlburt N, Salvucci A, Schwessinger B, Fisher AJ, Stergiopoulos I.

Plant Cell. 2016 Aug;28(8):1945-65. doi: 10.1105/tpc.15.00893. Epub 2016 Jul 8.


Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides.

Thynne E, Saur IML, Simbaqueba J, Ogilvie HA, Gonzalez-Cendales Y, Mead O, Taranto A, Catanzariti AM, McDonald MC, Schwessinger B, Jones DA, Rathjen JP, Solomon PS.

Mol Plant Pathol. 2017 Aug;18(6):811-824. doi: 10.1111/mpp.12444. Epub 2016 Sep 19.


Bacterial Outer Membrane Vesicles Induce Plant Immune Responses.

Bahar O, Mordukhovich G, Luu DD, Schwessinger B, Daudi A, Jehle AK, Felix G, Ronald PC.

Mol Plant Microbe Interact. 2016 May;29(5):374-84. doi: 10.1094/MPMI-12-15-0270-R. Epub 2016 Mar 29.


A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection.

Schwessinger B, Li X, Ellinghaus TL, Chan LJ, Wei T, Joe A, Thomas N, Pruitt R, Adams PD, Chern MS, Petzold CJ, Liu CC, Ronald PC.

Integr Biol (Camb). 2016 Apr 18;8(4):542-5. doi: 10.1039/c5ib00232j. Epub 2015 Nov 27.


The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium.

Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, Robinson MR, Chan LJ, Luu DD, Chen H, Bahar O, Daudi A, De Vleesschauwer D, Caddell D, Zhang W, Zhao X, Li X, Heazlewood JL, Ruan D, Majumder D, Chern M, Kalbacher H, Midha S, Patil PB, Sonti RV, Petzold CJ, Liu CC, Brodbelt JS, Felix G, Ronald PC.

Sci Adv. 2015 Jul 24;1(6):e1500245. doi: 10.1126/sciadv.1500245. eCollection 2015 Jul.


Changing SERKs and priorities during plant life.

Schwessinger B, Rathjen JP.

Trends Plant Sci. 2015 Sep;20(9):531-3. doi: 10.1016/j.tplants.2015.06.006. Epub 2015 Jun 26.


Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Apr 23;11(4):e1004872. doi: 10.1371/journal.ppat.1004872. eCollection 2015 Apr.


Focus issue on plant immunity: from model systems to crop species.

Schwessinger B, Bart R, Krasileva KV, Coaker G.

Front Plant Sci. 2015 Mar 26;6:195. doi: 10.3389/fpls.2015.00195. eCollection 2015. No abstract available.


Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.

Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC.

PLoS Pathog. 2015 Mar 30;11(3):e1004809. doi: 10.1371/journal.ppat.1004809. eCollection 2015 Mar. Erratum in: PLoS Pathog. 2015 Apr;11(4):e1004872. Thomas, Nicolas [corrected to Thomas, Nicholas].


Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).

Lao J, Sharma MK, Sharma R, Fernández-Niño SM, Schmutz J, Ronald PC, Heazlewood JL, Schwessinger B.

Proteomics. 2015 Jul;15(13):2286-90. doi: 10.1002/pmic.201400487. Epub 2015 Mar 16.


How postdocs benefit from building a union.

Cain B, Budke JM, Wood KJ, Sweeney NT, Schwessinger B.

Elife. 2014 Nov 21;3. doi: 10.7554/eLife.05614. No abstract available.


OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae.

Zuo S, Zhou X, Chen M, Zhang S, Schwessinger B, Ruan D, Yuan C, Wang J, Chen X, Ronald PC.

J Integr Plant Biol. 2014 Dec;56(12):1179-1192. doi: 10.1111/jipb.12290. Epub 2014 Nov 16.


A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation.

Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S, Kadota Y, Oh MH, Sklenar J, Derbyshire P, Lozano-Durán R, Malinovsky FG, Monaghan J, Menke FL, Huber SC, He SY, Zipfel C.

Science. 2014 Mar 28;343(6178):1509-12. doi: 10.1126/science.1248849. Epub 2014 Mar 13.


The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles.

Bahar O, Pruitt R, Luu DD, Schwessinger B, Daudi A, Liu F, Ruan R, Fontaine-Bodin L, Koebnik R, Ronald P.

PeerJ. 2014 Jan 7;2:e242. doi: 10.7717/peerj.242. eCollection 2014.


An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors.

Chen X, Zuo S, Schwessinger B, Chern M, Canlas PE, Ruan D, Zhou X, Wang J, Daudi A, Petzold CJ, Heazlewood JL, Ronald PC.

Mol Plant. 2014 May;7(5):874-92. doi: 10.1093/mp/ssu003. Epub 2014 Jan 30.


Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1.

Malinovsky FG, Batoux M, Schwessinger B, Youn JH, Stransfeld L, Win J, Kim SK, Zipfel C.

Plant Physiol. 2014 Mar;164(3):1443-55. doi: 10.1104/pp.113.234625. Epub 2014 Jan 17.


A common signaling process that promotes mycorrhizal and oomycete colonization of plants.

Wang E, Schornack S, Marsh JF, Gobbato E, Schwessinger B, Eastmond P, Schultze M, Kamoun S, Oldroyd GE.

Curr Biol. 2012 Dec 4;22(23):2242-6. doi: 10.1016/j.cub.2012.09.043. Epub 2012 Nov 1.


Tyrosine sulfation in a Gram-negative bacterium.

Han SW, Lee SW, Bahar O, Schwessinger B, Robinson MR, Shaw JB, Madsen JA, Brodbelt JS, Ronald PC.

Nat Commun. 2012;3:1153. doi: 10.1038/ncomms2157.


Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures.

Dardick C, Schwessinger B, Ronald P.

Curr Opin Plant Biol. 2012 Aug;15(4):358-66. doi: 10.1016/j.pbi.2012.05.002. Epub 2012 May 31. Review.


Plant innate immunity: perception of conserved microbial signatures.

Schwessinger B, Ronald PC.

Annu Rev Plant Biol. 2012;63:451-82. doi: 10.1146/annurev-arplant-042811-105518. Epub 2012 Feb 9. Review.


Cautionary notes on the use of C-terminal BAK1 fusion proteins for functional studies.

Ntoukakis V, Schwessinger B, Segonzac C, Zipfel C.

Plant Cell. 2011 Nov;23(11):3871-8. doi: 10.1105/tpc.111.090779. Epub 2011 Nov 30.


Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1.

Albrecht C, Boutrot F, Segonzac C, Schwessinger B, Gimenez-Ibanez S, Chinchilla D, Rathjen JP, de Vries SC, Zipfel C.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):303-8. doi: 10.1073/pnas.1109921108. Epub 2011 Nov 15.


The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.

Roux M, Schwessinger B, Albrecht C, Chinchilla D, Jones A, Holton N, Malinovsky FG, Tör M, de Vries S, Zipfel C.

Plant Cell. 2011 Jun;23(6):2440-55. doi: 10.1105/tpc.111.084301. Epub 2011 Jun 21.


Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1.

Schwessinger B, Roux M, Kadota Y, Ntoukakis V, Sklenar J, Jones A, Zipfel C.

PLoS Genet. 2011 Apr;7(4):e1002046. doi: 10.1371/journal.pgen.1002046. Epub 2011 Apr 28.


Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity.

Nekrasov V, Li J, Batoux M, Roux M, Chu ZH, Lacombe S, Rougon A, Bittel P, Kiss-Papp M, Chinchilla D, van Esse HP, Jorda L, Schwessinger B, Nicaise V, Thomma BP, Molina A, Jones JD, Zipfel C.

EMBO J. 2009 Nov 4;28(21):3428-38. doi: 10.1038/emboj.2009.262. Epub 2009 Sep 17.


Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C.

Nature. 2009 Sep 17;461(7262):393-8. doi: 10.1038/nature08358. Epub 2009 Sep 9.


Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis.

Conti L, Price G, O'Donnell E, Schwessinger B, Dominy P, Sadanandom A.

Plant Cell. 2008 Oct;20(10):2894-908. doi: 10.1105/tpc.108.058669. Epub 2008 Oct 10.


News from the frontline: recent insights into PAMP-triggered immunity in plants.

Schwessinger B, Zipfel C.

Curr Opin Plant Biol. 2008 Aug;11(4):389-95. doi: 10.1016/j.pbi.2008.06.001. Epub 2008 Jul 3. Review.


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