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Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.

Hinzke T, Kleiner M, Breusing C, Felbeck H, Häsler R, Sievert SM, Schlüter R, Rosenstiel P, Reusch TBH, Schweder T, Markert S.

mBio. 2019 Dec 17;10(6). pii: e02243-19. doi: 10.1128/mBio.02243-19.


Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.

Ponnudurai R, Heiden SE, Sayavedra L, Hinzke T, Kleiner M, Hentschker C, Felbeck H, Sievert SM, Schlüter R, Becher D, Schweder T, Markert S.

ISME J. 2019 Nov 4. doi: 10.1038/s41396-019-0517-6. [Epub ahead of print]


Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium.

Fischer T, Schorb M, Reintjes G, Kolovou A, Santarella-Mellwig R, Markert S, Rhiel E, Littmann S, Becher D, Schweder T, Harder J.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e00829-19. doi: 10.1128/AEM.00829-19. Print 2019 Oct 1.


In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.

Krüger K, Chafee M, Ben Francis T, Glavina Del Rio T, Becher D, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Nov;13(11):2800-2816. doi: 10.1038/s41396-019-0476-y. Epub 2019 Jul 17.


A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.

Reisky L, Préchoux A, Zühlke MK, Bäumgen M, Robb CS, Gerlach N, Roret T, Stanetty C, Larocque R, Michel G, Song T, Markert S, Unfried F, Mihovilovic MD, Trautwein-Schult A, Becher D, Schweder T, Bornscheuer UT, Hehemann JH.

Nat Chem Biol. 2019 Aug;15(8):803-812. doi: 10.1038/s41589-019-0311-9. Epub 2019 Jul 8.


Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M, Mooshammer M, Markert S, Turaev D, Becher D, Rattei T, Schweder T, Richter A, Watzka M, Nielsen PH, Wagner M.

Environ Microbiol. 2019 Oct;21(10):3831-3854. doi: 10.1111/1462-2920.14732. Epub 2019 Jul 25.


Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.

Herlemann DPR, Markert S, Meeske C, Andersson AF, de Bruijn I, Hentschker C, Unfried F, Becher D, Jürgens K, Schweder T.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00825-19. doi: 10.1128/AEM.00825-19. Print 2019 Aug 1.


An auto-inducible phosphate-controlled expression system of Bacillus licheniformis.

Trung NT, Hung NM, Thuan NH, Canh NX, Schweder T, Jürgen B.

BMC Biotechnol. 2019 Jan 9;19(1):3. doi: 10.1186/s12896-018-0490-6.


Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses.

Meier DV, Pjevac P, Bach W, Markert S, Schweder T, Jamieson J, Petersen S, Amann R, Meyerdierks A.

Environ Microbiol. 2019 Feb;21(2):682-701. doi: 10.1111/1462-2920.14514. Epub 2019 Jan 21.


Transcriptomic and proteomic insight into the mechanism of cyclooctasulfur- versus thiosulfate-oxidation by the chemolithoautotroph Sulfurimonas denitrificans.

Götz F, Pjevac P, Markert S, McNichol J, Becher D, Schweder T, Mussmann M, Sievert SM.

Environ Microbiol. 2019 Jan;21(1):244-258. doi: 10.1111/1462-2920.14452. Epub 2018 Nov 26.


Alpha- and beta-mannan utilization by marine Bacteroidetes.

Chen J, Robb CS, Unfried F, Kappelmann L, Markert S, Song T, Harder J, Avcı B, Becher D, Xie P, Amann RI, Hehemann JH, Schweder T, Teeling H.

Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16.


Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides.

Koch H, Dürwald A, Schweder T, Noriega-Ortega B, Vidal-Melgosa S, Hehemann JH, Dittmar T, Freese HM, Becher D, Simon M, Wietz M.

ISME J. 2019 Jan;13(1):92-103. doi: 10.1038/s41396-018-0252-4. Epub 2018 Aug 16.


Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.


Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.

Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T.

ISME J. 2018 Dec;12(12):2894-2906. doi: 10.1038/s41396-018-0243-5. Epub 2018 Jul 30.


Biochemical characterization of an ulvan lyase from the marine flavobacterium Formosa agariphila KMM 3901T.

Reisky L, Stanetty C, Mihovilovic MD, Schweder T, Hehemann JH, Bornscheuer UT.

Appl Microbiol Biotechnol. 2018 Aug;102(16):6987-6996. doi: 10.1007/s00253-018-9142-y. Epub 2018 Jun 12.


Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

Pjevac P, Meier DV, Markert S, Hentschker C, Schweder T, Becher D, Gruber-Vodicka HR, Richter M, Bach W, Amann R, Meyerdierks A.

Front Microbiol. 2018 Apr 6;9:680. doi: 10.3389/fmicb.2018.00680. eCollection 2018.


Publisher Correction: Oxidative demethylation of algal carbohydrates by cytochrome P450 monooxygenases.

Reisky L, Büchsenschütz HC, Engel J, Song T, Schweder T, Hehemann JH, Bornscheuer UT.

Nat Chem Biol. 2018 Sep;14(9):902. doi: 10.1038/s41589-018-0020-9.


Oxidative demethylation of algal carbohydrates by cytochrome P450 monooxygenases.

Reisky L, Büchsenschütz HC, Engel J, Song T, Schweder T, Hehemann JH, Bornscheuer UT.

Nat Chem Biol. 2018 Apr;14(4):342-344. doi: 10.1038/s41589-018-0005-8. Epub 2018 Feb 19. Erratum in: Nat Chem Biol. 2018 Mar 8;:.


Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.

Ponnudurai R, Sayavedra L, Kleiner M, Heiden SE, Thürmer A, Felbeck H, Schlüter R, Sievert SM, Daniel R, Schweder T, Markert S.

Stand Genomic Sci. 2017 Sep 2;12:50. doi: 10.1186/s40793-017-0266-y. eCollection 2017.


Exploiting fine-scale genetic and physiological variation of closely related microbes to reveal unknown enzyme functions.

Badur AH, Plutz MJ, Yalamanchili G, Jagtap SS, Schweder T, Unfried F, Markert S, Polz MF, Hehemann JH, Rao CV.

J Biol Chem. 2017 Aug 4;292(31):13056-13067. doi: 10.1074/jbc.M117.787192. Epub 2017 Jun 7.


Bacillus pumilus KatX2 confers enhanced hydrogen peroxide resistance to a Bacillus subtilis PkatA::katX2 mutant strain.

Handtke S, Albrecht D, Zühlke D, Otto A, Becher D, Schweder T, Riedel K, Hecker M, Voigt B.

Microb Cell Fact. 2017 Apr 26;16(1):72. doi: 10.1186/s12934-017-0684-y.


Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Giovannelli D, Sievert SM, Hügler M, Markert S, Becher D, Schweder T, Vetriani C.

Elife. 2017 Apr 24;6. pii: e18990. doi: 10.7554/eLife.18990.


Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria.

Hehemann JH, Truong LV, Unfried F, Welsch N, Kabisch J, Heiden SE, Junker S, Becher D, Thürmer A, Daniel R, Amann R, Schweder T.

Environ Microbiol. 2017 Jun;19(6):2320-2333. doi: 10.1111/1462-2920.13726. Epub 2017 Apr 3.


Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis.

Ponnudurai R, Kleiner M, Sayavedra L, Petersen JM, Moche M, Otto A, Becher D, Takeuchi T, Satoh N, Dubilier N, Schweder T, Markert S.

ISME J. 2017 Feb;11(2):463-477. doi: 10.1038/ismej.2016.124. Epub 2016 Nov 1.


Nitrogen fixation in a chemoautotrophic lucinid symbiosis.

König S, Gros O, Heiden SE, Hinzke T, Thürmer A, Poehlein A, Meyer S, Vatin M, Mbéguié-A-Mbéguié D, Tocny J, Ponnudurai R, Daniel R, Becher D, Schweder T, Markert S.

Nat Microbiol. 2016 Oct 24;2:16193. doi: 10.1038/nmicrobiol.2016.193.


Staphylococcal serine protease-like proteins are pacemakers of allergic airway reactions to Staphylococcus aureus.

Stentzel S, Teufelberger A, Nordengrün M, Kolata J, Schmidt F, van Crombruggen K, Michalik S, Kumpfmüller J, Tischer S, Schweder T, Hecker M, Engelmann S, Völker U, Krysko O, Bachert C, Bröker BM.

J Allergy Clin Immunol. 2017 Feb;139(2):492-500.e8. doi: 10.1016/j.jaci.2016.03.045. Epub 2016 May 10.


A Phosphate Starvation-Inducible Ribonuclease of Bacillus licheniformis.

Nguyen TT, Nguyen MH, Nguyen HT, Nguyen HA, Le TH, Schweder T, Jürgen B.

J Microbiol Biotechnol. 2016 Aug 28;26(8):1464-72. doi: 10.4014/jmb.1601.01087.


The anaerobic linalool metabolism in Thauera linaloolentis 47 Lol.

Marmulla R, Cala EP, Markert S, Schweder T, Harder J.

BMC Microbiol. 2016 Apr 27;16:76. doi: 10.1186/s12866-016-0693-8.


Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol.

Marmulla R, Šafarić B, Markert S, Schweder T, Harder J.

BMC Biochem. 2016 Mar 15;17:6. doi: 10.1186/s12858-016-0062-0.


Effects of Halide Ions on the Carbamidocyclophane Biosynthesis in Nostoc sp. CAVN2.

Preisitsch M, Heiden SE, Beerbaum M, Niedermeyer TH, Schneefeld M, Herrmann J, Kumpfmüller J, Thürmer A, Neidhardt I, Wiesner C, Daniel R, Müller R, Bange FC, Schmieder P, Schweder T, Mundt S.

Mar Drugs. 2016 Jan 20;14(1):21. doi: 10.3390/md14010021.


Production of the polyketide 6-deoxyerythronolide B in the heterologous host Bacillus subtilis.

Kumpfmüller J, Methling K, Fang L, Pfeifer BA, Lalk M, Schweder T.

Appl Microbiol Biotechnol. 2016 Feb;100(3):1209-1220. doi: 10.1007/s00253-015-6990-6. Epub 2015 Oct 2.


Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels.

Sayavedra L, Kleiner M, Ponnudurai R, Wetzel S, Pelletier E, Barbe V, Satoh N, Shoguchi E, Fink D, Breusing C, Reusch TB, Rosenstiel P, Schilhabel MB, Becher D, Schweder T, Markert S, Dubilier N, Petersen JM.

Elife. 2015 Sep 15;4:e07966. doi: 10.7554/eLife.07966.


High-resolution proteome maps of Bacillus licheniformis cells growing in minimal medium.

Voigt B, Albrecht D, Sievers S, Becher D, Bongaerts J, Evers S, Schweder T, Maurer KH, Hecker M.

Proteomics. 2015 Aug;15(15):2629-33. doi: 10.1002/pmic.201400504. Epub 2015 May 12.


Stepwise optimization of a low-temperature Bacillus subtilis expression system for "difficult to express" proteins.

Welsch N, Homuth G, Schweder T.

Appl Microbiol Biotechnol. 2015 Aug;99(15):6363-76. doi: 10.1007/s00253-015-6552-y. Epub 2015 Apr 9.


Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom.

Xing P, Hahnke RL, Unfried F, Markert S, Huang S, Barbeyron T, Harder J, Becher D, Schweder T, Glöckner FO, Amann RI, Teeling H.

ISME J. 2015 Jun;9(6):1410-22. doi: 10.1038/ismej.2014.225. Epub 2014 Dec 5.


A model for global diversity in response to temperature change over geological time scales, with reference to planktic organisms.

De Blasio FV, Liow LH, Schweder T, De Blasio BF.

J Theor Biol. 2015 Jan 21;365:445-56. doi: 10.1016/j.jtbi.2014.10.031. Epub 2014 Nov 7.


Bacillus subtilis as heterologous host for the secretory production of the non-ribosomal cyclodepsipeptide enniatin.

Zobel S, Kumpfmüller J, Süssmuth RD, Schweder T.

Appl Microbiol Biotechnol. 2015 Jan;99(2):681-91. doi: 10.1007/s00253-014-6199-0. Epub 2014 Nov 15.


A proteomic view of cell physiology of the industrial workhorse Bacillus licheniformis.

Voigt B, Schroeter R, Schweder T, Jürgen B, Albrecht D, van Dijl JM, Maurer KH, Hecker M.

J Biotechnol. 2014 Dec 10;191:139-49. doi: 10.1016/j.jbiotec.2014.06.004. Epub 2014 Jul 8.


The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen.

Petasch J, Disch EM, Markert S, Becher D, Schweder T, Hüttel B, Reinhardt R, Harder J.

BMC Microbiol. 2014 Jun 21;14:164. doi: 10.1186/1471-2180-14-164.


Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803.

Kabisch A, Otto A, König S, Becher D, Albrecht D, Schüler M, Teeling H, Amann RI, Schweder T.

ISME J. 2014 Jul;8(7):1492-502. doi: 10.1038/ismej.2014.4. Epub 2014 Feb 13.


Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress.

Handtke S, Schroeter R, Jürgen B, Methling K, Schlüter R, Albrecht D, van Hijum SA, Bongaerts J, Maurer KH, Lalk M, Schweder T, Hecker M, Voigt B.

PLoS One. 2014 Jan 20;9(1):e85625. doi: 10.1371/journal.pone.0085625. eCollection 2014.


Stress responses of the industrial workhorse Bacillus licheniformis to osmotic challenges.

Schroeter R, Hoffmann T, Voigt B, Meyer H, Bleisteiner M, Muntel J, Jürgen B, Albrecht D, Becher D, Lalk M, Evers S, Bongaerts J, Maurer KH, Putzer H, Hecker M, Schweder T, Bremer E.

PLoS One. 2013 Nov 15;8(11):e80956. doi: 10.1371/journal.pone.0080956. eCollection 2013.


An optimized technique for rapid genome modifications of Bacillus subtilis.

Kumpfmüller J, Kabisch J, Schweder T.

J Microbiol Methods. 2013 Dec;95(3):350-2. doi: 10.1016/j.mimet.2013.10.003. Epub 2013 Oct 17.


Metabolic engineering of Bacillus subtilis for growth on overflow metabolites.

Kabisch J, Pratzka I, Meyer H, Albrecht D, Lalk M, Ehrenreich A, Schweder T.

Microb Cell Fact. 2013 Jul 25;12:72. doi: 10.1186/1475-2859-12-72.


Fractional parentage analysis and a scale-free reproductive network of brown trout.

Koyano H, Serbezov D, Kishino H, Schweder T.

J Theor Biol. 2013 Nov 7;336:18-35. doi: 10.1016/j.jtbi.2013.06.038. Epub 2013 Jul 18.


The response of Bacillus licheniformis to heat and ethanol stress and the role of the SigB regulon.

Voigt B, Schroeter R, Jürgen B, Albrecht D, Evers S, Bongaerts J, Maurer KH, Schweder T, Hecker M.

Proteomics. 2013 Jul;13(14):2140-61. doi: 10.1002/pmic.201200297.


Proteomic profiles and kinetics of development of bacteriophage T4 and its rI and rIII mutants in slowly growing Escherichia coli.

Golec P, Karczewska-Golec J, Voigt B, Albrecht D, Schweder T, Hecker M, Wegrzyn G, Łos M.

J Gen Virol. 2013 Apr;94(Pt 4):896-905. doi: 10.1099/vir.0.048686-0. Epub 2012 Dec 12.


The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.

Heinz E, Williams TA, Nakjang S, Noël CJ, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Becher D, Bernhardt J, Dagan T, Hacker C, Lucocq JM, Schweder T, Rattei T, Hall N, Hirt RP, Embley TM.

PLoS Pathog. 2012;8(10):e1002979. doi: 10.1371/journal.ppat.1002979. Epub 2012 Oct 25.


Characterization and optimization of Bacillus subtilis ATCC 6051 as an expression host.

Kabisch J, Thürmer A, Hübel T, Popper L, Daniel R, Schweder T.

J Biotechnol. 2013 Jan 20;163(2):97-104. doi: 10.1016/j.jbiotec.2012.06.034. Epub 2012 Jul 10.


Cell surface proteome of the marine planctomycete Rhodopirellula baltica.

Voigt B, Hieu CX, Hempel K, Becher D, Schlüter R, Teeling H, Glöckner FO, Amann R, Hecker M, Schweder T.

Proteomics. 2012 Jun;12(11):1781-91. doi: 10.1002/pmic.201100512.


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