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Items: 22

1.

MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis.

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B.

Mol Plant. 2019 Jun 3;12(6):879-892. doi: 10.1016/j.molp.2019.01.003. Epub 2019 Jan 9.

2.

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

Vogel A, Schwacke R, Denton AK, Usadel B, Hollmann J, Fischer K, Bolger A, Schmidt MH, Bolger ME, Gundlach H, Mayer KFX, Weiss-Schneeweiss H, Temsch EM, Krause K.

Nat Commun. 2018 Jun 28;9(1):2515. doi: 10.1038/s41467-018-04344-z.

3.

Identification and Characterization of Plant Membrane Proteins Using ARAMEMNON.

Schwacke R, Flügge UI.

Methods Mol Biol. 2018;1696:249-259. doi: 10.1007/978-1-4939-7411-5_17.

PMID:
29086409
4.

From plant genomes to phenotypes.

Bolger M, Schwacke R, Gundlach H, Schmutzer T, Chen J, Arend D, Oppermann M, Weise S, Lange M, Fiorani F, Spannagl M, Scholz U, Mayer K, Usadel B.

J Biotechnol. 2017 Nov 10;261:46-52. doi: 10.1016/j.jbiotec.2017.06.003. Epub 2017 Jun 9. Review.

5.

Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.

Striberny B, Melton AE, Schwacke R, Krause K, Fischer K, Goertzen LR, Rashotte AM.

Plant Signal Behav. 2017 Feb;12(2):e1276684. doi: 10.1080/15592324.2016.1276684.

6.

DNA Damage-Induced Transcription of Transposable Elements and Long Non-coding RNAs in Arabidopsis Is Rare and ATM-Dependent.

Wang Z, Schwacke R, Kunze R.

Mol Plant. 2016 Aug 1;9(8):1142-1155. doi: 10.1016/j.molp.2016.04.015. Epub 2016 May 2.

7.

Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta.

Olsen S, Striberny B, Hollmann J, Schwacke R, Popper Z, Krause K.

J Exp Bot. 2016 Feb;67(3):695-708. doi: 10.1093/jxb/erv482. Epub 2015 Nov 11.

8.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
9.

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms.

Tveit A, Schwacke R, Svenning MM, Urich T.

ISME J. 2013 Feb;7(2):299-311. doi: 10.1038/ismej.2012.99. Epub 2012 Sep 6.

10.

GabiPD - The GABI Primary Database integrates plant proteomic data with gene-centric information.

Usadel B, Schwacke R, Nagel A, Kersten B.

Front Plant Sci. 2012 Jul 9;3:154. doi: 10.3389/fpls.2012.00154. eCollection 2012.

11.

Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.

Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, Steiner JM, Löffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho PM, Rensing SA, Symeonidi A, Doddapaneni H, Green BR, Rajah VD, Boore J, Bhattacharya D.

Science. 2012 Feb 17;335(6070):843-7. doi: 10.1126/science.1213561. Erratum in: Science. 2012 Mar 16;335(6074):1302.

12.

A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2.

Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, Parsa SA, Kim DY, Acharya BR, Stein EV, Hu HC, Villiers F, Takeda K, Yang Y, Han YS, Schwacke R, Chiang W, Kato N, Loqué D, Assmann SM, Kwak JM, Schroeder JI, Rhee SY, Frommer WB.

Front Physiol. 2010 Sep 22;1:24. doi: 10.3389/fphys.2010.00024. eCollection 2010.

13.

Comparative survey of plastid and mitochondrial targeting properties of transcription factors in Arabidopsis and rice.

Schwacke R, Fischer K, Ketelsen B, Krupinska K, Krause K.

Mol Genet Genomics. 2007 Jun;277(6):631-46. Epub 2007 Feb 13.

PMID:
17295027
14.

Transcription analysis of arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence.

van der Graaff E, Schwacke R, Schneider A, Desimone M, Flügge UI, Kunze R.

Plant Physiol. 2006 Jun;141(2):776-92. Epub 2006 Apr 7.

15.

Solute transporters of the plastid envelope membrane.

Weber AP, Schwacke R, Flügge UI.

Annu Rev Plant Biol. 2005;56:133-64. Review.

PMID:
15862092
16.

Plant membrane proteome databases.

Schwacke R, Flügge UI, Kunze R.

Plant Physiol Biochem. 2004 Dec;42(12):1023-34. Epub 2005 Jan 20. Review.

PMID:
15707839
17.

ARAMEMNON, a novel database for Arabidopsis integral membrane proteins.

Schwacke R, Schneider A, van der Graaff E, Fischer K, Catoni E, Desimone M, Frommer WB, Flügge UI, Kunze R.

Plant Physiol. 2003 Jan;131(1):16-26.

18.

Identification of an Arabidopsis mitochondrial succinate-fumarate translocator.

Catoni E, Schwab R, Hilpert M, Desimone M, Schwacke R, Flügge UI, Schumacher K, Frommer WB.

FEBS Lett. 2003 Jan 16;534(1-3):87-92.

19.

An Arabidopsis thaliana knock-out mutant of the chloroplast triose phosphate/phosphate translocator is severely compromised only when starch synthesis, but not starch mobilisation is abolished.

Schneider A, Häusler RE, Kolukisaoglu U, Kunze R, van der Graaff E, Schwacke R, Catoni E, Desimone M, Flügge UI.

Plant J. 2002 Dec;32(5):685-99.

20.

Identification and characterization of GABA, proline and quaternary ammonium compound transporters from Arabidopsis thaliana.

Breitkreuz KE, Shelp BJ, Fischer WN, Schwacke R, Rentsch D.

FEBS Lett. 1999 May 7;450(3):280-4.

21.

LeProT1, a transporter for proline, glycine betaine, and gamma-amino butyric acid in tomato pollen.

Schwacke R, Grallath S, Breitkreuz KE, Stransky E, Stransky H, Frommer WB, Rentsch D.

Plant Cell. 1999 Mar;11(3):377-92.

22.

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