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Items: 30

1.

Author Correction: Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells.

Klawitter S, Fuchs NV, Upton KR, Muñoz-Lopez M, Shukla R, Wang J, Garcia-Cañadas M, Lopez-Ruiz C, Gerhardt DJ, Sebe A, Grabundzija I, Merkert S, Gerdes P, Pulgarin JA, Bock A, Held U, Witthuhn A, Haase A, Sarkadi B, Löwer J, Wolvetang EJ, Martin U, Ivics Z, Izsvák Z, Garcia-Perez JL, Faulkner GJ, Schumann GG.

Nat Commun. 2018 Dec 19;9(1):5398. doi: 10.1038/s41467-018-07917-0.

2.

Retrotransposons in the development and progression of amyotrophic lateral sclerosis.

Savage AL, Schumann GG, Breen G, Bubb VJ, Al-Chalabi A, Quinn JP.

J Neurol Neurosurg Psychiatry. 2019 Mar;90(3):284-293. doi: 10.1136/jnnp-2018-319210. Epub 2018 Oct 10.

3.

APOBEC3B Activity Is Prevalent in Urothelial Carcinoma Cells and Only Slightly Affected by LINE-1 Expression.

Jaguva Vasudevan AA, Kreimer U, Schulz WA, Krikoni A, Schumann GG, Häussinger D, Münk C, Goering W.

Front Microbiol. 2018 Sep 4;9:2088. doi: 10.3389/fmicb.2018.02088. eCollection 2018.

4.

Report of the international conference on manufacturing and testing of pluripotent stem cells.

Abbot S, Agbanyo F, Ahlfors JE, Baghbaderani BA, Bartido S, Bharti K, Burke C, Carlsson B, Cavagnaro J, Creasey A, DiGiusto D, Francissen K, Gaffney A, Goldring C, Gorba T, Griffiths E, Hanatani T, Hayakawa T, Heki T, Hoogendoorn K, Kawamata S, Kimura H, Kirkeby A, Knezevic I, Lebkowski J, Lin S, Lin-Gibson S, Lubiniecki A, O'Shea O, Pera M, Petricciani J, Pigeau G, Ratcliffe A, Sato Y, Schumann GG, Shingleton W, Stacey Chair G, Sullivan S, Svendsen CN, Trouvin JH, Vandeputte J, Yuan BZ, Zoon K.

Biologicals. 2018 Nov;56:67-83. doi: 10.1016/j.biologicals.2018.08.004. Epub 2018 Aug 24.

PMID:
30150108
5.

Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids.

Schwertz H, Rowley JW, Schumann GG, Thorack U, Campbell RA, Manne BK, Zimmerman GA, Weyrich AS, Rondina MT.

Arterioscler Thromb Vasc Biol. 2018 Apr;38(4):801-815. doi: 10.1161/ATVBAHA.117.310552. Epub 2018 Jan 4.

PMID:
29301786
6.

The Flow of the Gibbon LAVA Element Is Facilitated by the LINE-1 Retrotransposition Machinery.

Meyer TJ, Held U, Nevonen KA, Klawitter S, Pirzer T, Carbone L, Schumann GG.

Genome Biol Evol. 2016 Oct 30;8(10):3209-3225.

7.

APOBEC4 Enhances the Replication of HIV-1.

Marino D, Perković M, Hain A, Jaguva Vasudevan AA, Hofmann H, Hanschmann KM, Mühlebach MD, Schumann GG, König R, Cichutek K, Häussinger D, Münk C.

PLoS One. 2016 Jun 1;11(6):e0155422. doi: 10.1371/journal.pone.0155422. eCollection 2016.

8.

CD30 Receptor-Targeted Lentiviral Vectors for Human Induced Pluripotent Stem Cell-Specific Gene Modification.

Friedel T, Jung-Klawitter S, Sebe A, Schenk F, Modlich U, Ivics Z, Schumann GG, Buchholz CJ, Schneider IC.

Stem Cells Dev. 2016 May 1;25(9):729-39. doi: 10.1089/scd.2015.0386. Epub 2016 Apr 11.

PMID:
26956718
9.

The Engineered SVA Trans-mobilization Assay.

Bock A, Schumann GG.

Methods Mol Biol. 2016;1400:203-22. doi: 10.1007/978-1-4939-3372-3_14.

PMID:
26895056
10.

Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells.

Klawitter S, Fuchs NV, Upton KR, Muñoz-Lopez M, Shukla R, Wang J, Garcia-Cañadas M, Lopez-Ruiz C, Gerhardt DJ, Sebe A, Grabundzija I, Merkert S, Gerdes P, Pulgarin JA, Bock A, Held U, Witthuhn A, Haase A, Sarkadi B, Löwer J, Wolvetang EJ, Martin U, Ivics Z, Izsvák Z, Garcia-Perez JL, Faulkner GJ, Schumann GG.

Nat Commun. 2016 Jan 8;7:10286. doi: 10.1038/ncomms10286. Erratum in: Nat Commun. 2018 Dec 19;9(1):5398.

11.

Enhanced expression of LINE-1-encoded ORF2 protein in early stages of colon and prostate transformation.

De Luca C, Guadagni F, Sinibaldi-Vallebona P, Sentinelli S, Gallucci M, Hoffmann A, Schumann GG, Spadafora C, Sciamanna I.

Oncotarget. 2016 Jan 26;7(4):4048-61. doi: 10.18632/oncotarget.6767.

12.

Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.

Gallus S, Hallström BM, Kumar V, Dodt WG, Janke A, Schumann GG, Nilsson MA.

Mol Biol Evol. 2015 May;32(5):1268-83. doi: 10.1093/molbev/msv017. Epub 2015 Jan 28.

13.

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Wang J, Xie G, Singh M, Ghanbarian AT, Raskó T, Szvetnik A, Cai H, Besser D, Prigione A, Fuchs NV, Schumann GG, Chen W, Lorincz MC, Ivics Z, Hurst LD, Izsvák Z.

Nature. 2014 Dec 18;516(7531):405-9. doi: 10.1038/nature13804. Epub 2014 Oct 15.

PMID:
25317556
14.

Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.

15.

Human LINE-1 restriction by APOBEC3C is deaminase independent and mediated by an ORF1p interaction that affects LINE reverse transcriptase activity.

Horn AV, Klawitter S, Held U, Berger A, Vasudevan AA, Bock A, Hofmann H, Hanschmann KM, Trösemeier JH, Flory E, Jabulowsky RA, Han JS, Löwer J, Löwer R, Münk C, Schumann GG.

Nucleic Acids Res. 2014 Jan;42(1):396-416. doi: 10.1093/nar/gkt898. Epub 2013 Oct 7.

16.

Transcriptional regulation of human-specific SVAF₁ retrotransposons by cis-regulatory MAST2 sequences.

Zabolotneva AA, Bantysh O, Suntsova MV, Efimova N, Malakhova GV, Schumann GG, Gayfullin NM, Buzdin AA.

Gene. 2012 Aug 15;505(1):128-36. doi: 10.1016/j.gene.2012.05.016. Epub 2012 May 15.

PMID:
22609064
17.

The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery.

Raiz J, Damert A, Chira S, Held U, Klawitter S, Hamdorf M, Löwer J, Strätling WH, Löwer R, Schumann GG.

Nucleic Acids Res. 2012 Feb;40(4):1666-83. doi: 10.1093/nar/gkr863. Epub 2011 Nov 3.

18.

LINE-1 retrotransposition events affect endothelial proliferation and migration.

Banaz-Yaşar F, Steffen G, Hauschild J, Bongartz BM, Schumann GG, Ergün S.

Histochem Cell Biol. 2010 Dec;134(6):581-9. doi: 10.1007/s00418-010-0758-y. Epub 2010 Nov 11.

PMID:
21069374
19.

Unique functions of repetitive transcriptomes.

Schumann GG, Gogvadze EV, Osanai-Futahashi M, Kuroki A, Münk C, Fujiwara H, Ivics Z, Buzdin AA.

Int Rev Cell Mol Biol. 2010;285:115-88. doi: 10.1016/B978-0-12-381047-2.00003-7. Review.

PMID:
21035099
20.

Trex-1 deficiency in rheumatoid arthritis synovial fibroblasts.

Neidhart M, Karouzakis E, Schumann GG, Gay RE, Gay S.

Arthritis Rheum. 2010 Sep;62(9):2673-9. doi: 10.1002/art.27567.

21.

5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome.

Damert A, Raiz J, Horn AV, Löwer J, Wang H, Xing J, Batzer MA, Löwer R, Schumann GG.

Genome Res. 2009 Nov;19(11):1992-2008. doi: 10.1101/gr.093435.109. Epub 2009 Aug 3.

22.

Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells.

Kirilyuk A, Tolstonog GV, Damert A, Held U, Hahn S, Löwer R, Buschmann C, Horn AV, Traub P, Schumann GG.

Nucleic Acids Res. 2008 Feb;36(2):648-65. Epub 2007 Dec 10.

23.

Determinants for DNA target structure selectivity of the human LINE-1 retrotransposon endonuclease.

Repanas K, Zingler N, Layer LE, Schumann GG, Perrakis A, Weichenrieder O.

Nucleic Acids Res. 2007;35(14):4914-26. Epub 2007 Jul 10.

24.
25.

Distinct roles for LINE-1 and HERV-K retroelements in cell proliferation, differentiation and tumor progression.

Oricchio E, Sciamanna I, Beraldi R, Tolstonog GV, Schumann GG, Spadafora C.

Oncogene. 2007 Jun 21;26(29):4226-33. Epub 2007 Jan 22.

PMID:
17237820
26.

APOBEC3 proteins inhibit human LINE-1 retrotransposition.

Muckenfuss H, Hamdorf M, Held U, Perkovic M, Löwer J, Cichutek K, Flory E, Schumann GG, Münk C.

J Biol Chem. 2006 Aug 4;281(31):22161-72. Epub 2006 May 30.

27.

Inhibition of LINE-1 expression in the heart decreases ischemic damage by activation of Akt/PKB signaling.

Lucchinetti E, Feng J, Silva Rd, Tolstonog GV, Schaub MC, Schumann GG, Zaugg M.

Physiol Genomics. 2006 Apr 13;25(2):314-24. Epub 2006 Jan 17.

PMID:
16418318
28.

APE-type non-LTR retrotransposons: determinants involved in target site recognition.

Zingler N, Weichenrieder O, Schumann GG.

Cytogenet Genome Res. 2005;110(1-4):250-68. Review.

PMID:
16093679
29.

Analysis of 5' junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5'-end attachment requiring microhomology-mediated end-joining.

Zingler N, Willhoeft U, Brose HP, Schoder V, Jahns T, Hanschmann KM, Morrish TA, Löwer J, Schumann GG.

Genome Res. 2005 Jun;15(6):780-9.

30.

Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues.

Ergün S, Buschmann C, Heukeshoven J, Dammann K, Schnieders F, Lauke H, Chalajour F, Kilic N, Strätling WH, Schumann GG.

J Biol Chem. 2004 Jun 25;279(26):27753-63. Epub 2004 Mar 31.

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