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Items: 24

1.

A design framework and exemplar metrics for FAIRness.

Wilkinson MD, Sansone SA, Schultes E, Doorn P, Bonino da Silva Santos LO, Dumontier M.

Sci Data. 2018 Jun 26;5:180118. doi: 10.1038/sdata.2018.118. No abstract available.

2.

Automated extraction of potential migraine biomarkers using a semantic graph.

Vlietstra WJ, Zielman R, van Dongen RM, Schultes EA, Wiesman F, Vos R, van Mulligen EM, Kors JA.

J Biomed Inform. 2017 Jul;71:178-189. doi: 10.1016/j.jbi.2017.05.018. Epub 2017 Jun 1.

3.

The FAIR Guiding Principles for scientific data management and stewardship.

Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B.

Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.

4.

The Implicitome: A Resource for Rationalizing Gene-Disease Associations.

Hettne KM, Thompson M, van Haagen HH, van der Horst E, Kaliyaperumal R, Mina E, Tatum Z, Laros JF, van Mulligen EM, Schuemie M, Aten E, Li TS, Bruskiewich R, Good BM, Su AI, Kors JA, den Dunnen J, van Ommen GJ, Roos M, 't Hoen PA, Mons B, Schultes EA.

PLoS One. 2016 Feb 26;11(2):e0149621. doi: 10.1371/journal.pone.0149621. eCollection 2016.

5.

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study.

Mina E, Thompson M, Kaliyaperumal R, Zhao J, der Horst vE, Tatum Z, Hettne KM, Schultes EA, Mons B, Roos M.

J Biomed Semantics. 2015 Feb 9;6:5. doi: 10.1186/2041-1480-6-5. eCollection 2015.

6.

Gateways to the FANTOM5 promoter level mammalian expression atlas.

Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F, Ishikawa-Kato S, Mungall CJ, Arner E, Baillie JK, Bertin N, Bono H, de Hoon M, Diehl AD, Dimont E, Freeman TC, Fujieda K, Hide W, Kaliyaperumal R, Katayama T, Lassmann T, Meehan TF, Nishikata K, Ono H, Rehli M, Sandelin A, Schultes EA, 't Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H; FANTOM consortium.

Genome Biol. 2015 Jan 5;16:22. doi: 10.1186/s13059-014-0560-6.

7.

Gene expression analysis identifies global gene dosage sensitivity in cancer.

Fehrmann RS, Karjalainen JM, Krajewska M, Westra HJ, Maloney D, Simeonov A, Pers TH, Hirschhorn JN, Jansen RC, Schultes EA, van Haagen HH, de Vries EG, te Meerman GJ, Wijmenga C, van Vugt MA, Franke L.

Nat Genet. 2015 Feb;47(2):115-25. doi: 10.1038/ng.3173. Epub 2015 Jan 12.

PMID:
25581432
8.

Preserving sequence annotations across reference sequences.

Tatum Z, Roos M, Gibson AP, Taschner PE, Thompson M, Schultes EA, Laros JF.

J Biomed Semantics. 2014 Jun 3;5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S6. doi: 10.1186/2041-1480-5-S1-S6. eCollection 2014.

9.

A promoter-level mammalian expression atlas.

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, Bertin N, Jørgensen M, Dimont E, Arner E, Schmidl C, Schaefer U, Medvedeva YA, Plessy C, Vitezic M, Severin J, Semple C, Ishizu Y, Young RS, Francescatto M, Alam I, Albanese D, Altschuler GM, Arakawa T, Archer JA, Arner P, Babina M, Rennie S, Balwierz PJ, Beckhouse AG, Pradhan-Bhatt S, Blake JA, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Burroughs AM, Califano A, Cannistraci CV, Carbajo D, Chen Y, Chierici M, Ciani Y, Clevers HC, Dalla E, Davis CA, Detmar M, Diehl AD, Dohi T, Drabløs F, Edge AS, Edinger M, Ekwall K, Endoh M, Enomoto H, Fagiolini M, Fairbairn L, Fang H, Farach-Carson MC, Faulkner GJ, Favorov AV, Fisher ME, Frith MC, Fujita R, Fukuda S, Furlanello C, Furino M, Furusawa J, Geijtenbeek TB, Gibson AP, Gingeras T, Goldowitz D, Gough J, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Harbers M, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto T, Herlyn M, Hitchens KJ, Ho Sui SJ, Hofmann OM, Hoof I, Hori F, Huminiecki L, Iida K, Ikawa T, Jankovic BR, Jia H, Joshi A, Jurman G, Kaczkowski B, Kai C, Kaida K, Kaiho A, Kajiyama K, Kanamori-Katayama M, Kasianov AS, Kasukawa T, Katayama S, Kato S, Kawaguchi S, Kawamoto H, Kawamura YI, Kawashima T, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klinken SP, Knox AJ, Kojima M, Kojima S, Kondo N, Koseki H, Koyasu S, Krampitz S, Kubosaki A, Kwon AT, Laros JF, Lee W, Lennartsson A, Li K, Lilje B, Lipovich L, Mackay-Sim A, Manabe R, Mar JC, Marchand B, Mathelier A, Mejhert N, Meynert A, Mizuno Y, de Lima Morais DA, Morikawa H, Morimoto M, Moro K, Motakis E, Motohashi H, Mummery CL, Murata M, Nagao-Sato S, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nakazato K, van Nimwegen E, Ninomiya N, Nishiyori H, Noma S, Noma S, Noazaki T, Ogishima S, Ohkura N, Ohimiya H, Ohno H, Ohshima M, Okada-Hatakeyama M, Okazaki Y, Orlando V, Ovchinnikov DA, Pain A, Passier R, Patrikakis M, Persson H, Piazza S, Prendergast JG, Rackham OJ, Ramilowski JA, Rashid M, Ravasi T, Rizzu P, Roncador M, Roy S, Rye MB, Saijyo E, Sajantila A, Saka A, Sakaguchi S, Sakai M, Sato H, Savvi S, Saxena A, Schneider C, Schultes EA, Schulze-Tanzil GG, Schwegmann A, Sengstag T, Sheng G, Shimoji H, Shimoni Y, Shin JW, Simon C, Sugiyama D, Sugiyama T, Suzuki M, Suzuki N, Swoboda RK, 't Hoen PA, Tagami M, Takahashi N, Takai J, Tanaka H, Tatsukawa H, Tatum Z, Thompson M, Toyodo H, Toyoda T, Valen E, van de Wetering M, van den Berg LM, Verado R, Vijayan D, Vorontsov IE, Wasserman WW, Watanabe S, Wells CA, Winteringham LN, Wolvetang E, Wood EJ, Yamaguchi Y, Yamamoto M, Yoneda M, Yonekura Y, Yoshida S, Zabierowski SE, Zhang PG, Zhao X, Zucchelli S, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.

Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182.

10.

Generic information can retrieve known biological associations: implications for biomedical knowledge discovery.

van Haagen HH, 't Hoen PA, Mons B, Schultes EA.

PLoS One. 2013 Nov 19;8(11):e78665. doi: 10.1371/journal.pone.0078665. eCollection 2013.

11.

Reproducibility: In praise of open research measures.

Kolker E, Altintas I, Bourne P, Faris J, Fox G, Frishman D, Geraci C, Hancock W, Lin B, Lancet D, Lisitsa A, Knight R, Martens L, Mesirov J, Özdemir V, Schultes E, Smith T, Snyder M, Srivastava S, Toppo S, Wilmes P.

Nature. 2013 Jun 13;498(7453):170. doi: 10.1038/498170b. No abstract available.

PMID:
23765483
12.

An autonomously self-assembling dendritic DNA nanostructure for target DNA detection.

Chandran H, Rangnekar A, Shetty G, Schultes EA, Reif JH, LaBean TH.

Biotechnol J. 2013 Feb;8(2):221-7. doi: 10.1002/biot.201100499. Epub 2012 Oct 10.

PMID:
22965937
13.

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain.

Patrinos GP, Cooper DN, van Mulligen E, Gkantouna V, Tzimas G, Tatum Z, Schultes E, Roos M, Mons B.

Hum Mutat. 2012 Nov;33(11):1503-12. doi: 10.1002/humu.22144. Epub 2012 Jul 23.

PMID:
22736453
14.

Phage display screening without repetitious selection rounds.

't Hoen PA, Jirka SM, Ten Broeke BR, Schultes EA, Aguilera B, Pang KH, Heemskerk H, Aartsma-Rus A, van Ommen GJ, den Dunnen JT.

Anal Biochem. 2012 Feb 15;421(2):622-31. doi: 10.1016/j.ab.2011.11.005. Epub 2011 Nov 13.

15.

The value of data.

Mons B, van Haagen H, Chichester C, Hoen PB, den Dunnen JT, van Ommen G, van Mulligen E, Singh B, Hooft R, Roos M, Hammond J, Kiesel B, Giardine B, Velterop J, Groth P, Schultes E.

Nat Genet. 2011 Mar 29;43(4):281-3. doi: 10.1038/ng0411-281.

PMID:
21445068
16.

Protein folding absent selection.

Labean TH, Butt TR, Kauffman SA, Schultes EA.

Genes (Basel). 2011 Aug 16;2(3):608-26. doi: 10.3390/genes2030608.

17.

Compact and ordered collapse of randomly generated RNA sequences.

Schultes EA, Spasic A, Mohanty U, Bartel DP.

Nat Struct Mol Biol. 2005 Dec;12(12):1130-6. Epub 2005 Nov 6.

PMID:
16273104
18.

One sequence, two ribozymes: implications for the emergence of new ribozyme folds.

Schultes EA, Bartel DP.

Science. 2000 Jul 21;289(5478):448-52.

19.

Estimating the contributions of selection and self-organization in RNA secondary structure.

Schultes EA, Hraber PT, LaBean TH.

J Mol Evol. 1999 Jul;49(1):76-83.

PMID:
10368436
21.

Fenbendazole: a new, highly effective anthelmintic.

Baeder C, Bähr H, Christ O, Düwel D, Kellner HM, Kirsch R, Loewe H, Schultes E, Schütz E, Westen H.

Experientia. 1974 Jul 15;30(7):753-4. No abstract available.

PMID:
4277074
22.

[Studies on the tolerance of the new local anesthetic carticaine (author's transl)].

Baeder C, Bähr H, Benoit W, Doerr BJ, Engelbart K, Hergott J, Kramer M, Schütz E, Schultes E, Scholz J, Springman FR, Wolf GL.

Prakt Anaesth. 1974 Jun;9(3):147-52. German. No abstract available.

PMID:
4459902
23.

[Compatibility of injectable iron compounds].

Schütz E, Schultes E.

Berl Munch Tierarztl Wochenschr. 1973 Jul 1;86(13):252-5. German. No abstract available.

PMID:
4732512
24.

[Toxicity of 3,7-dimethyl-1-(5-oxo-hexyl)-xanthine in animal experiment].

Schultes E, Popendiker K, Doerr BI, Leuschner F.

Arzneimittelforschung. 1971 Oct;21(10):1446-53. German. No abstract available.

PMID:
5171858

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