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Items: 29

1.

Helix Cracking Regulates the Critical Interaction between RetS and GacS in Pseudomonas aeruginosa.

Mancl JM, Ray WK, Helm RF, Schubot FD.

Structure. 2019 May 7;27(5):785-793.e5. doi: 10.1016/j.str.2019.02.006. Epub 2019 Mar 14.

PMID:
30879888
2.

Structure of the sensory domain of McpX from Sinorhizobium meliloti, the first known bacterial chemotactic sensor for quaternary ammonium compounds.

Shrestha M, Compton KK, Mancl JM, Webb BA, Brown AM, Scharf BE, Schubot FD.

Biochem J. 2018 Dec 14;475(24):3949-3962. doi: 10.1042/BCJ20180769.

PMID:
30442721
3.

The type IV pilus assembly ATPase PilB functions as a signaling protein to regulate exopolysaccharide production in Myxococcus xanthus.

Black WP, Wang L, Jing X, SaldaƱa RC, Li F, Scharf BE, Schubot FD, Yang Z.

Sci Rep. 2017 Aug 4;7(1):7263. doi: 10.1038/s41598-017-07594-x.

4.

Using a Concept Inventory to Reveal Student Thinking Associated with Common Misconceptions about Antibiotic Resistance.

Stevens AM, Smith AC, Marbach-Ad G, Balcom SA, Buchner J, Daniel SL, DeStefano JJ, El-Sayed NM, Frauwirth K, Lee VT, McIver KS, Melville SB, Mosser DM, Popham DL, Scharf BE, Schubot FD, Seyler RW Jr, Shields PA, Song W, Stein DC, Stewart RC, Thompson KV, Yang Z, Yarwood SA.

J Microbiol Biol Educ. 2017 Apr 21;18(1). pii: 18.1.10. doi: 10.1128/jmbe.v18i1.1281. eCollection 2017 Apr.

5.

Crystal Structure of a Type IV Pilus Assembly ATPase: Insights into the Molecular Mechanism of PilB from Thermus thermophilus.

Mancl JM, Black WP, Robinson H, Yang Z, Schubot FD.

Structure. 2016 Nov 1;24(11):1886-1897. doi: 10.1016/j.str.2016.08.010. Epub 2016 Sep 22.

6.

Structural Analysis of the Regulatory Domain of ExsA, a Key Transcriptional Regulator of the Type Three Secretion System in Pseudomonas aeruginosa.

Shrestha M, Xiao Y, Robinson H, Schubot FD.

PLoS One. 2015 Aug 28;10(8):e0136533. doi: 10.1371/journal.pone.0136533. eCollection 2015.

7.

Self-association is required for occupation of adjacent binding sites in Pseudomonas aeruginosa type III secretion system promoters.

Marsden AE, Schubot FD, Yahr TL.

J Bacteriol. 2014 Oct;196(20):3546-55. doi: 10.1128/JB.01969-14. Epub 2014 Jul 28.

8.

A naturally variable residue in the S1 subsite of M1 family aminopeptidases modulates catalytic properties and promotes functional specialization.

Dalal S, Ragheb DR, Schubot FD, Klemba M.

J Biol Chem. 2013 Sep 6;288(36):26004-12. doi: 10.1074/jbc.M113.465625. Epub 2013 Jul 29.

9.

Self-trimerization of ExsD limits inhibition of the Pseudomonas aeruginosa transcriptional activator ExsA in vitro.

Bernhards RC, Marsden AE, Esher SK, Yahr TL, Schubot FD.

FEBS J. 2013 Feb;280(4):1084-94. doi: 10.1111/febs.12103. Epub 2013 Jan 24.

10.

The catalytic domain of the germination-specific lytic transglycosylase SleB from Bacillus anthracis displays a unique active site topology.

Jing X, Robinson HR, Heffron JD, Popham DL, Schubot FD.

Proteins. 2012 Oct;80(10):2469-75. doi: 10.1002/prot.24140. Epub 2012 Jul 31.

11.

Orientation of Pseudomonas aeruginosa ExsA monomers bound to promoter DNA and base-specific contacts with the P(exoT) promoter.

King JM, Brutinel ED, Marsden AE, Schubot FD, Yahr TL.

J Bacteriol. 2012 May;194(10):2573-85. doi: 10.1128/JB.00107-12. Epub 2012 Mar 9.

12.

Phosphorylation and dephosphorylation among Dif chemosensory proteins essential for exopolysaccharide regulation in Myxococcus xanthus.

Black WP, Schubot FD, Li Z, Yang Z.

J Bacteriol. 2010 Sep;192(17):4267-74. doi: 10.1128/JB.00403-10. Epub 2010 Jun 11.

13.
14.

Crystal structure and oligomeric state of the RetS signaling kinase sensory domain.

Jing X, Jaw J, Robinson HH, Schubot FD.

Proteins. 2010 May 15;78(7):1631-40. doi: 10.1002/prot.22679.

15.

Structural evidence suggests that antiactivator ExsD from Pseudomonas aeruginosa is a DNA binding protein.

Bernhards RC, Jing X, Vogelaar NJ, Robinson H, Schubot FD.

Protein Sci. 2009 Mar;18(3):503-13. doi: 10.1002/pro.48.

16.

New protein fold revealed by a 1.65 A resolution crystal structure of Francisella tularensis pathogenicity island protein IglC.

Sun P, Austin BP, Schubot FD, Waugh DS.

Protein Sci. 2007 Nov;16(11):2560-3. Epub 2007 Sep 28.

17.

Structure of the POZ domain of human LRF, a master regulator of oncogenesis.

Schubot FD, Tropea JE, Waugh DS.

Biochem Biophys Res Commun. 2006 Dec 8;351(1):1-6. Epub 2006 Oct 9.

PMID:
17052694
18.

Selection and characterization of Yersinia pestis YopN mutants that constitutively block Yop secretion.

Ferracci F, Schubot FD, Waugh DS, Plano GV.

Mol Microbiol. 2005 Aug;57(4):970-87.

19.

Crystal structure of the protease-resistant core domain of Yersinia pestis virulence factor YopR.

Schubot FD, Cherry S, Austin BP, Tropea JE, Waugh DS.

Protein Sci. 2005 Jun;14(6):1679-83.

20.

Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis.

Schubot FD, Jackson MW, Penrose KJ, Cherry S, Tropea JE, Plano GV, Waugh DS.

J Mol Biol. 2005 Mar 4;346(4):1147-61. Epub 2005 Jan 20.

PMID:
15701523
21.

On increasing protein-crystallization throughput for X-ray diffraction studies.

Shah AK, Liu ZJ, Stewart PD, Schubot FD, Rose JP, Newton MG, Wang BC.

Acta Crystallogr D Biol Crystallogr. 2005 Feb;61(Pt 2):123-9. Epub 2005 Jan 19.

PMID:
15681862
22.

A pivotal role for reductive methylation in the de novo crystallization of a ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YscB.

Schubot FD, Waugh DS.

Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):1981-6. Epub 2004 Oct 20.

PMID:
15502305
23.

Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.

Tempel W, Liu ZJ, Schubot FD, Shah A, Weinberg MV, Jenney FE Jr, Arendall WB 3rd, Adams MW, Richardson JS, Richardson DC, Rose JP, Wang BC.

Proteins. 2004 Dec 1;57(4):878-82. No abstract available.

PMID:
15468318
24.

Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum.

Schubot FD, Kataeva IA, Chang J, Shah AK, Ljungdahl LG, Rose JP, Wang BC.

Biochemistry. 2004 Feb 10;43(5):1163-70.

PMID:
14756552
25.

Structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum.

Schubot FD, Kataeva IA, Blum DL, Shah AK, Ljungdahl LG, Rose JP, Wang BC.

Biochemistry. 2001 Oct 23;40(42):12524-32.

PMID:
11601976
26.

Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription.

Schubot FD, Chen CJ, Rose JP, Dailey TA, Dailey HA, Wang BC.

Protein Sci. 2001 Oct;10(10):1980-8.

27.

Crystallization and preliminary X-ray analysis of the Clostridium thermocellum cellulosome xylanase Z feruloyl esterase domain.

Blum DL, Schubot FD, Ljungdahl LG, Rose JP, Wang BC.

Acta Crystallogr D Biol Crystallogr. 2000 Aug;56(Pt 8):1027-9.

PMID:
10944344
28.

Crystallization and preliminary X-ray diffraction analysis of the mitochondrial transcription factor sc-mtTFB from Saccharomyces cerevisiae.

Schubot FD, Chen CJ, Rose JP, Wang BC.

Acta Crystallogr D Biol Crystallogr. 2000 Jul;56(Pt 7):902-3.

PMID:
10930839
29.

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