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Items: 36

1.

Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species.

Hwang EY, Wei H, Schroeder SG, Fickus EW, Quigley CV, Elia P, Araya S, Dong F, Costa L, Ferreira ME, Cregan PB, Song Q.

G3 (Bethesda). 2019 Jul 9;9(7):2325-2336. doi: 10.1534/g3.119.400220.

2.

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits.

Fang L, Zhou Y, Liu S, Jiang J, Bickhart DM, Null DJ, Li B, Schroeder SG, Rosen BD, Cole JB, Van Tassell CP, Ma L, Liu GE.

Epigenetics. 2019 Mar;14(3):260-276. doi: 10.1080/15592294.2019.1582217. Epub 2019 Mar 24.

3.

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis ).

Liu S, Kang X, Catacchio CR, Liu M, Fang L, Schroeder SG, Li W, Rosen BD, Iamartino D, Iannuzzi L, Sonstegard TS, Van Tassell CP, Ventura M, Low WY, Williams JL, Bickhart DM, Liu GE.

Funct Integr Genomics. 2019 May;19(3):409-419. doi: 10.1007/s10142-019-00657-4. Epub 2019 Feb 7.

PMID:
30734132
4.

Draft Genome Sequence of Fish Pathogen Aeromonas bestiarum GA97-22.

Kumru S, Tekedar HC, Griffin MJ, Waldbieser GC, Liles MR, Sonstegard T, Schroeder SG, Lawrence ML, Karsi A.

Genome Announc. 2018 Jun 14;6(24). pii: e00524-18. doi: 10.1128/genomeA.00524-18.

5.

Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle.

Zhou Y, Connor EE, Wiggans GR, Lu Y, Tempelman RJ, Schroeder SG, Chen H, Liu GE.

BMC Genomics. 2018 May 2;19(1):314. doi: 10.1186/s12864-018-4699-5.

6.

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

Zhou Y, Connor EE, Bickhart DM, Li C, Baldwin RL, Schroeder SG, Rosen BD, Yang L, Van Tassell CP, Liu GE.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy039.

7.

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.

Porto-Neto LR, Bickhart DM, Landaeta-Hernandez AJ, Utsunomiya YT, Pagan M, Jimenez E, Hansen PJ, Dikmen S, Schroeder SG, Kim ES, Sun J, Crespo E, Amati N, Cole JB, Null DJ, Garcia JF, Reverter A, Barendse W, Sonstegard TS.

Front Genet. 2018 Feb 23;9:57. doi: 10.3389/fgene.2018.00057. eCollection 2018.

8.

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis).

Iamartino D, Nicolazzi EL, Van Tassell CP, Reecy JM, Fritz-Waters ER, Koltes JE, Biffani S, Sonstegard TS, Schroeder SG, Ajmone-Marsan P, Negrini R, Pasquariello R, Ramelli P, Coletta A, Garcia JF, Ali A, Ramunno L, Cosenza G, de Oliveira DAA, Drummond MG, Bastianetto E, Davassi A, Pirani A, Brew F, Williams JL.

PLoS One. 2017 Oct 5;12(10):e0185220. doi: 10.1371/journal.pone.0185220. eCollection 2017.

9.

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.

Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP.

Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6.

10.

Draft Genome Sequences of Three Aeromonas hydrophila Isolates from Catfish and Tilapia.

Tekedar HC, Kumru S, Kalindamar S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2017 Jan 19;5(3). pii: e01509-16. doi: 10.1128/genomeA.01509-16.

11.

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression.

Zhou Y, Xu L, Bickhart DM, Abdel Hay EH, Schroeder SG, Connor EE, Alexander LJ, Sonstegard TS, Van Tassell CP, Chen H, Liu GE.

BMC Genomics. 2016 Oct 6;17(1):779.

12.

Draft Genome Sequences of Four Virulent Aeromonas hydrophila Strains from Catfish Aquaculture.

Tekedar HC, Kumru S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2016 Aug 18;4(4). pii: e00860-16. doi: 10.1128/genomeA.00860-16.

13.

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus.

Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE.

BMC Genomics. 2016 Jun 1;17:419. doi: 10.1186/s12864-016-2461-4.

14.

Draft Genome Sequence of Aeromonas hydrophila TN97-08.

Tekedar HC, Kumru S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2016 May 26;4(3). pii: e00436-16. doi: 10.1128/genomeA.00436-16.

15.

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE.

DNA Res. 2016 Jun;23(3):253-62. doi: 10.1093/dnares/dsw013. Epub 2016 Apr 15.

16.

What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.

Whitacre LK, Tizioto PC, Kim J, Sonstegard TS, Schroeder SG, Alexander LJ, Medrano JF, Schnabel RD, Taylor JF, Decker JE.

BMC Genomics. 2015 Dec 29;16:1114. doi: 10.1186/s12864-015-2313-7.

17.

MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection.

Sun J, Aswath K, Schroeder SG, Lippolis JD, Reinhardt TA, Sonstegard TS.

BMC Genomics. 2015 Oct 16;16:806. doi: 10.1186/s12864-015-2044-9.

18.

SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.

Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB.

G3 (Bethesda). 2015 Aug 28;5(11):2285-90. doi: 10.1534/g3.115.020594.

19.

Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle.

Li RW, Wu S, Li CJ, Li W, Schroeder SG.

Vet Parasitol. 2015 Jul 30;211(3-4):241-50. doi: 10.1016/j.vetpar.2015.05.010. Epub 2015 May 18.

PMID:
26025321
20.

Complete Genome Sequence of Fish Pathogen Aeromonas hydrophila AL06-06.

Tekedar HC, Karsi A, Akgul A, Kalindamar S, Waldbieser GC, Sonstegard T, Schroeder SG, Lawrence ML.

Genome Announc. 2015 Apr 23;3(2). pii: e00368-15. doi: 10.1128/genomeA.00368-15.

21.

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Xu L, Bickhart DM, Cole JB, Schroeder SG, Song J, Tassell CP, Sonstegard TS, Liu GE.

Mol Biol Evol. 2015 Mar;32(3):711-25. doi: 10.1093/molbev/msu333. Epub 2014 Nov 26.

22.

Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations.

Aslam ML, Bastiaansen JW, Megens HJ, Crooijmans RP, Nasreen F, Blomberg le A, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genet. 2014 Nov 25;15:117. doi: 10.1186/s12863-014-0117-4.

23.

Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119.

Tekedar HC, Waldbieser GC, Karsi A, Liles MR, Griffin MJ, Vamenta S, Sonstegard T, Hossain M, Schroeder SG, Khoo L, Lawrence ML.

Genome Announc. 2013 Sep 19;1(5). pii: e00755-13. doi: 10.1128/genomeA.00755-13.

24.

Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle.

Sonstegard TS, Cole JB, VanRaden PM, Van Tassell CP, Null DJ, Schroeder SG, Bickhart D, McClure MC.

PLoS One. 2013;8(1):e54872. doi: 10.1371/journal.pone.0054872. Epub 2013 Jan 22.

25.

Gene expression analysis of copper tolerance and wood decay in the brown rot fungus Fibroporia radiculosa.

Tang JD, Parker LA, Perkins AD, Sonstegard TS, Schroeder SG, Nicholas DD, Diehl SV.

Appl Environ Microbiol. 2013 Mar;79(5):1523-33. doi: 10.1128/AEM.02916-12. Epub 2012 Dec 21.

26.

Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo).

Aslam ML, Bastiaansen JW, Elferink MG, Megens HJ, Crooijmans RP, Blomberg le A, Fleischer RC, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genomics. 2012 Aug 14;13:391. doi: 10.1186/1471-2164-13-391.

27.

Copy number variation of individual cattle genomes using next-generation sequencing.

Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE.

Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2.

28.

Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa.

Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV.

Appl Environ Microbiol. 2012 Apr;78(7):2272-81. doi: 10.1128/AEM.06745-11. Epub 2012 Jan 13.

29.

Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection.

Li RW, Schroeder SG.

Funct Integr Genomics. 2012 Mar;12(1):35-44. doi: 10.1007/s10142-011-0259-7. Epub 2011 Dec 28.

PMID:
22203460
30.

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation.

Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, Schroeder SG, Van Tassell CP, Gresham CR, Bridges SM, Burgess SC, Sonstegard TS.

Genome Biol. 2010;11(10):R102. doi: 10.1186/gb-2010-11-10-r102. Epub 2010 Oct 20.

31.

Metabolomic and proteomic changes in the xylem sap of maize under drought.

Alvarez S, Marsh EL, Schroeder SG, Schachtman DP.

Plant Cell Environ. 2008 Mar;31(3):325-40. Epub 2007 Dec 10.

32.

A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement.

Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD.

Plant Cell. 2005 Nov;17(11):2859-72. Epub 2005 Oct 14.

33.

The effects of artificial selection on the maize genome.

Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS.

Science. 2005 May 27;308(5726):1310-4. Erratum in: Science. 2005 Oct 7;310(5745):54.

34.

Genetic, physical, and informatics resources for maize. On the road to an integrated map.

Cone KC, McMullen MD, Bi IV, Davis GL, Yim YS, Gardiner JM, Polacco ML, Sanchez-Villeda H, Fang Z, Schroeder SG, Havermann SA, Bowers JE, Paterson AH, Soderlund CA, Engler FW, Wing RA, Coe EH Jr.

Plant Physiol. 2002 Dec;130(4):1598-605. Review. No abstract available.

35.

Structural studies of EcoRII methylase: exploring similarities among methylases.

Schroeder SG, Samudzi CT.

Protein Eng. 1997 Dec;10(12):1385-93.

PMID:
9543000
36.

Polyurethane foam extraction of platinum-tin halide complexes.

Schroeder SG, Chow A.

Talanta. 1992 Jul;39(7):837-47.

PMID:
18965460

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