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Identification of chloroplast envelope proteins with critical importance for cold acclimation.

Trentmann O, Mühlhaus T, Zimmer D, Sommer FK, Schroda M, Haferkamp I, Keller I, Pommerrenig B, Neuhaus HE.

Plant Physiol. 2020 Jan 13. pii: pp.00947.2019. doi: 10.1104/pp.19.00947. [Epub ahead of print]


Good News for Nuclear Transgene Expression in Chlamydomonas.

Schroda M.

Cells. 2019 Nov 28;8(12). pii: E1534. doi: 10.3390/cells8121534. Review.


The NADH Dehydrogenase Nde1 Executes Cell Death after Integrating Signals from Metabolism and Proteostasis on the Mitochondrial Surface.

Saladi S, Boos F, Poglitsch M, Meyer H, Sommer F, Mühlhaus T, Schroda M, Schuldiner M, Madeo F, Herrmann JM.

Mol Cell. 2020 Jan 2;77(1):189-202.e6. doi: 10.1016/j.molcel.2019.09.027. Epub 2019 Oct 23.


The Chlamydomonas deg1c Mutant Accumulates Proteins Involved in High Light Acclimation.

Theis J, Lang J, Spaniol B, Ferté S, Niemeyer J, Sommer F, Zimmer D, Venn B, Mehr SF, Mühlhaus T, Wollman FA, Schroda M.

Plant Physiol. 2019 Dec;181(4):1480-1497. doi: 10.1104/pp.19.01052. Epub 2019 Oct 11.


VIPP1 rods engulf membranes containing phosphatidylinositol phosphates.

Theis J, Gupta TK, Klingler J, Wan W, Albert S, Keller S, Engel BD, Schroda M.

Sci Rep. 2019 Jun 19;9(1):8725. doi: 10.1038/s41598-019-44259-3.


Metabolic Engineering of Corynebacterium glutamicum for High-Level Ectoine Production: Design, Combinatorial Assembly, and Implementation of a Transcriptionally Balanced Heterologous Ectoine Pathway.

Gießelmann G, Dietrich D, Jungmann L, Kohlstedt M, Jeon EJ, Yim SS, Sommer F, Zimmer D, Mühlhaus T, Schroda M, Jeong KJ, Becker J, Wittmann C.

Biotechnol J. 2019 Sep;14(9):e1800417. doi: 10.1002/biot.201800417. Epub 2019 Jul 3.


Hetero-oligomeric CPN60 resembles highly symmetric group-I chaperonin structure revealed by Cryo-EM.

Zhao Q, Zhang X, Sommer F, Ta N, Wang N, Schroda M, Cong Y, Liu C.

Plant J. 2019 Jun;98(5):798-812. doi: 10.1111/tpj.14273. Epub 2019 Mar 18.


The Role of Plastidic Trigger Factor Serving Protein Biogenesis in Green Algae and Land Plants.

Rohr M, Ries F, Herkt C, Gotsmann VL, Westrich LD, Gries K, Trösch R, Christmann J, Chaux-Jukic F, Jung M, Zimmer D, Mühlhaus T, Sommer F, Schroda M, Keller S, Möhlmann T, Willmund F.

Plant Physiol. 2019 Mar;179(3):1093-1110. doi: 10.1104/pp.18.01252. Epub 2019 Jan 16.


Artificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification.

Zimmer D, Schneider K, Sommer F, Schroda M, Mühlhaus T.

Front Plant Sci. 2018 Nov 13;9:1559. doi: 10.3389/fpls.2018.01559. eCollection 2018.


Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts.

Küken A, Sommer F, Yaneva-Roder L, Mackinder LC, Höhne M, Geimer S, Jonikas MC, Schroda M, Stitt M, Nikoloski Z, Mettler-Altmann T.

Elife. 2018 Oct 11;7. pii: e37960. doi: 10.7554/eLife.37960.


Absolute Quantification of Major Photosynthetic Protein Complexes in Chlamydomonas reinhardtii Using Quantification Concatamers (QconCATs).

Hammel A, Zimmer D, Sommer F, Mühlhaus T, Schroda M.

Front Plant Sci. 2018 Aug 30;9:1265. doi: 10.3389/fpls.2018.01265. eCollection 2018.


Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii.

Crozet P, Navarro FJ, Willmund F, Mehrshahi P, Bakowski K, Lauersen KJ, Pérez-Pérez ME, Auroy P, Gorchs Rovira A, Sauret-Gueto S, Niemeyer J, Spaniol B, Theis J, Trösch R, Westrich LD, Vavitsas K, Baier T, Hübner W, de Carpentier F, Cassarini M, Danon A, Henri J, Marchand CH, de Mia M, Sarkissian K, Baulcombe DC, Peltier G, Crespo JL, Kruse O, Jensen PE, Schroda M, Smith AG, Lemaire SD.

ACS Synth Biol. 2018 Sep 21;7(9):2074-2086. doi: 10.1021/acssynbio.8b00251. Epub 2018 Sep 5.


Investigations on VELVET regulatory mutants confirm the role of host tissue acidification and secretion of proteins in the pathogenesis of Botrytis cinerea.

Müller N, Leroch M, Schumacher J, Zimmer D, Könnel A, Klug K, Leisen T, Scheuring D, Sommer F, Mühlhaus T, Schroda M, Hahn M.

New Phytol. 2018 Aug;219(3):1062-1074. doi: 10.1111/nph.15221. Epub 2018 May 23.


Substrates of the chloroplast small heat shock proteins 22E/F point to thermolability as a regulative switch for heat acclimation in Chlamydomonas reinhardtii.

Rütgers M, Muranaka LS, Mühlhaus T, Sommer F, Thoms S, Schurig J, Willmund F, Schulz-Raffelt M, Schroda M.

Plant Mol Biol. 2017 Dec;95(6):579-591. doi: 10.1007/s11103-017-0672-y. Epub 2017 Nov 1.


Not changes in membrane fluidity but proteotoxic stress triggers heat shock protein expression in Chlamydomonas reinhardtii.

Rütgers M, Muranaka LS, Schulz-Raffelt M, Thoms S, Schurig J, Willmund F, Schroda M.

Plant Cell Environ. 2017 Dec;40(12):2987-3001. doi: 10.1111/pce.13060. Epub 2017 Sep 27.


Proteomic profiling of the mitochondrial ribosome identifies Atp25 as a composite mitochondrial precursor protein.

Woellhaf MW, Sommer F, Schroda M, Herrmann JM.

Mol Biol Cell. 2016 Oct 15;27(20):3031-3039. Epub 2016 Aug 31.


A disulfide bond in the TIM23 complex is crucial for voltage gating and mitochondrial protein import.

Ramesh A, Peleh V, Martinez-Caballero S, Wollweber F, Sommer F, van der Laan M, Schroda M, Alexander RT, Campo ML, Herrmann JM.

J Cell Biol. 2016 Aug 15;214(4):417-31. doi: 10.1083/jcb.201602074. Epub 2016 Aug 8.


Revisiting the photosystem II repair cycle.

Theis J, Schroda M.

Plant Signal Behav. 2016 Sep;11(9):e1218587. doi: 10.1080/15592324.2016.1218587. Review.


A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle.

Mackinder LC, Meyer MT, Mettler-Altmann T, Chen VK, Mitchell MC, Caspari O, Freeman Rosenzweig ES, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas MC.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):5958-63. doi: 10.1073/pnas.1522866113. Epub 2016 May 10.


GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis.

Tadini L, Pesaresi P, Kleine T, Rossi F, Guljamow A, Sommer F, Mühlhaus T, Schroda M, Masiero S, Pribil M, Rothbart M, Hedtke B, Grimm B, Leister D.

Plant Physiol. 2016 Mar;170(3):1817-30. doi: 10.1104/pp.15.02033. Epub 2016 Jan 28.


PETO Interacts with Other Effectors of Cyclic Electron Flow in Chlamydomonas.

Takahashi H, Schmollinger S, Lee JH, Schroda M, Rappaport F, Wollman FA, Vallon O.

Mol Plant. 2016 Apr 4;9(4):558-68. doi: 10.1016/j.molp.2015.12.017. Epub 2016 Jan 6.


TEF30 Interacts with Photosystem II Monomers and Is Involved in the Repair of Photodamaged Photosystem II in Chlamydomonas reinhardtii.

Muranaka LS, Rütgers M, Bujaldon S, Heublein A, Geimer S, Wollman FA, Schroda M.

Plant Physiol. 2016 Feb;170(2):821-40. doi: 10.1104/pp.15.01458. Epub 2015 Dec 7.


Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii.

Barahimipour R, Strenkert D, Neupert J, Schroda M, Merchant SS, Bock R.

Plant J. 2015 Nov;84(4):704-17. doi: 10.1111/tpj.13033. Epub 2015 Oct 16.


Redox-regulated dynamic interplay between Cox19 and the copper-binding protein Cox11 in the intermembrane space of mitochondria facilitates biogenesis of cytochrome c oxidase.

Bode M, Woellhaf MW, Bohnert M, van der Laan M, Sommer F, Jung M, Zimmermann R, Schroda M, Herrmann JM.

Mol Biol Cell. 2015 Jul 1;26(13):2385-401. doi: 10.1091/mbc.E14-11-1526. Epub 2015 Apr 29.


The Chlamydomonas heat stress response.

Schroda M, Hemme D, Mühlhaus T.

Plant J. 2015 May;82(3):466-480. doi: 10.1111/tpj.12816. Epub 2015 Mar 27. Review.


ATP-dependent molecular chaperones in plastids--More complex than expected.

Trösch R, Mühlhaus T, Schroda M, Willmund F.

Biochim Biophys Acta. 2015 Sep;1847(9):872-88. doi: 10.1016/j.bbabio.2015.01.002. Epub 2015 Jan 14. Review.


Identification of the transporter responsible for sucrose accumulation in sugar beet taproots.

Jung B, Ludewig F, Schulz A, Meißner G, Wöstefeld N, Flügge UI, Pommerrenig B, Wirsching P, Sauer N, Koch W, Sommer F, Mühlhaus T, Schroda M, Cuin TA, Graus D, Marten I, Hedrich R, Neuhaus HE.

Nat Plants. 2015 Jan 8;1:14001. doi: 10.1038/nplants.2014.1.


Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii.

Hemme D, Veyel D, Mühlhaus T, Sommer F, Jüppner J, Unger AK, Sandmann M, Fehrle I, Schönfelder S, Steup M, Geimer S, Kopka J, Giavalisco P, Schroda M.

Plant Cell. 2014 Nov;26(11):4270-97. doi: 10.1105/tpc.114.130997. Epub 2014 Nov 18.


Identification and validation of protein-protein interactions by combining co-immunoprecipitation, antigen competition, and stable isotope labeling.

Sommer F, Mühlhaus T, Hemme D, Veyel D, Schroda M.

Methods Mol Biol. 2014;1188:245-61. doi: 10.1007/978-1-4939-1142-4_17.


Rationales and approaches for studying metabolism in eukaryotic microalgae.

Veyel D, Erban A, Fehrle I, Kopka J, Schroda M.

Metabolites. 2014 Apr 11;4(2):184-217. doi: 10.3390/metabo4020184.


Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii.

Mettler T, Mühlhaus T, Hemme D, Schöttler MA, Rupprecht J, Idoine A, Veyel D, Pal SK, Yaneva-Roder L, Winck FV, Sommer F, Vosloh D, Seiwert B, Erban A, Burgos A, Arvidsson S, Schönfelder S, Arnold A, Günther M, Krause U, Lohse M, Kopka J, Nikoloski Z, Mueller-Roeber B, Willmitzer L, Bock R, Schroda M, Stitt M.

Plant Cell. 2014 Jun;26(6):2310-2350. Epub 2014 Jun 3.


Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control.

Ramundo S, Casero D, Mühlhaus T, Hemme D, Sommer F, Crèvecoeur M, Rahire M, Schroda M, Rusch J, Goodenough U, Pellegrini M, Perez-Perez ME, Crespo JL, Schaad O, Civic N, Rochaix JD.

Plant Cell. 2014 May;26(5):2201-2222. Epub 2014 May 30.


Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.

Schmollinger S, Mühlhaus T, Boyle NR, Blaby IK, Casero D, Mettler T, Moseley JL, Kropat J, Sommer F, Strenkert D, Hemme D, Pellegrini M, Grossman AR, Stitt M, Schroda M, Merchant SS.

Plant Cell. 2014 Apr;26(4):1410-1435. Epub 2014 Apr 18.


In vitro characterization of bacterial and chloroplast Hsp70 systems reveals an evolutionary optimization of the co-chaperones for their Hsp70 partner.

Veyel D, Sommer F, Muranaka LS, Rütgers M, Lemaire SD, Schroda M.

Biochem J. 2014 May 15;460(1):13-24. doi: 10.1042/BJ20140001.


A role of VIPP1 as a dynamic structure within thylakoid centers as sites of photosystem biogenesis?

Rütgers M, Schroda M.

Plant Signal Behav. 2013 Nov;8(11):e27037. doi: 10.4161/psb.27037. Epub 2013 Dec 3.


Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Plant Cell Environ. 2014 May;37(5):1250-8. doi: 10.1111/pce.12231. Epub 2013 Dec 17.


Dissecting the heat stress response in Chlamydomonas by pharmaceutical and RNAi approaches reveals conserved and novel aspects.

Schmollinger S, Schulz-Raffelt M, Strenkert D, Veyel D, Vallon O, Schroda M.

Mol Plant. 2013 Nov;6(6):1795-813. doi: 10.1093/mp/sst086. Epub 2013 May 27.


Heat shock factor 1 counteracts epigenetic silencing of nuclear transgenes in Chlamydomonas reinhardtii.

Strenkert D, Schmollinger S, Schroda M.

Nucleic Acids Res. 2013 May 1;41(10):5273-89. doi: 10.1093/nar/gkt224. Epub 2013 Apr 12.


A protocol for the identification of protein-protein interactions based on 15N metabolic labeling, immunoprecipitation, quantitative mass spectrometry and affinity modulation.

Schmollinger S, Strenkert D, Offeddu V, Nordhues A, Sommer F, Schroda M.

J Vis Exp. 2012 Sep 24;(67). pii: 4083. doi: 10.3791/4083.


Evidence for a role of VIPP1 in the structural organization of the photosynthetic apparatus in Chlamydomonas.

Nordhues A, Schöttler MA, Unger AK, Geimer S, Schönfelder S, Schmollinger S, Rütgers M, Finazzi G, Soppa B, Sommer F, Mühlhaus T, Roach T, Krieger-Liszkay A, Lokstein H, Crespo JL, Schroda M.

Plant Cell. 2012 Feb;24(2):637-59. doi: 10.1105/tpc.111.092692. Epub 2012 Feb 3.


Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii.

Strenkert D, Schmollinger S, Schroda M.

Plant Methods. 2011 Nov 3;7(1):35. doi: 10.1186/1746-4811-7-35.


Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii.

Strenkert D, Schmollinger S, Sommer F, Schulz-Raffelt M, Schroda M.

Plant Cell. 2011 Jun;23(6):2285-301. doi: 10.1105/tpc.111.085266. Epub 2011 Jun 24.


Quantitative shotgun proteomics using a uniform ¹⁵N-labeled standard to monitor proteome dynamics in time course experiments reveals new insights into the heat stress response of Chlamydomonas reinhardtii.

Mühlhaus T, Weiss J, Hemme D, Sommer F, Schroda M.

Mol Cell Proteomics. 2011 Sep;10(9):M110.004739. doi: 10.1074/mcp.M110.004739. Epub 2011 May 24.


New insights into the roles of molecular chaperones in Chlamydomonas and Volvox.

Nordhues A, Miller SM, Mühlhaus T, Schroda M.

Int Rev Cell Mol Biol. 2010;285:75-113. doi: 10.1016/B978-0-12-381047-2.00002-5. Review.


An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance.

Schmollinger S, Strenkert D, Schroda M.

Curr Genet. 2010 Aug;56(4):383-9. doi: 10.1007/s00294-010-0304-4. Epub 2010 May 7.


Chlorophyll-deficient mutants of Chlamydomonas reinhardtii that accumulate magnesium protoporphyrin IX.

Meinecke L, Alawady A, Schroda M, Willows R, Kobayashi MC, Niyogi KK, Grimm B, Beck CF.

Plant Mol Biol. 2010 Apr;72(6):643-58. doi: 10.1007/s11103-010-9604-9. Epub 2010 Feb 3.


Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B.

Dorn KV, Willmund F, Schwarz C, Henselmann C, Pohl T, Hess B, Veyel D, Usadel B, Friedrich T, Nickelsen J, Schroda M.

Biochem J. 2010 Mar 29;427(2):205-15. doi: 10.1042/BJ20091412.


A 'foldosome' in the chloroplast?

Schroda M, Mühlhaus T.

Plant Signal Behav. 2009 Apr;4(4):301-3. No abstract available.


Application of quantitative immunoprecipitation combined with knockdown and cross-linking to Chlamydomonas reveals the presence of vesicle-inducing protein in plastids 1 in a common complex with chloroplast HSP90C.

Heide H, Nordhues A, Drepper F, Nick S, Schulz-Raffelt M, Haehnel W, Schroda M.

Proteomics. 2009 Jun;9(11):3079-89. doi: 10.1002/pmic.200800872.


The chloroplast DnaJ homolog CDJ1 of Chlamydomonas reinhardtii is part of a multichaperone complex containing HSP70B, CGE1, and HSP90C.

Willmund F, Dorn KV, Schulz-Raffelt M, Schroda M.

Plant Physiol. 2008 Dec;148(4):2070-82. doi: 10.1104/pp.108.127944. Epub 2008 Oct 17.

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