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Items: 1 to 50 of 79

1.

The range of sampling times affects Zika virus evolutionary rates and divergence times.

Barzilai LP, Schrago CG.

Arch Virol. 2019 Dec;164(12):3027-3034. doi: 10.1007/s00705-019-04430-7. Epub 2019 Oct 9.

PMID:
31598845
2.

The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.

Mello B, Schrago CG.

Evol Bioinform Online. 2019 Jun 13;15:1176934319855988. doi: 10.1177/1176934319855988. eCollection 2019.

3.

A multigene timescale and diversification dynamics of Ciliophora evolution.

Fernandes NM, Schrago CG.

Mol Phylogenet Evol. 2019 Oct;139:106521. doi: 10.1016/j.ympev.2019.106521. Epub 2019 May 29.

PMID:
31152779
4.
5.

Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys.

Schrago CG, Seuánez HN.

Am J Primatol. 2019 Mar;81(3):e22955. doi: 10.1002/ajp.22955. Epub 2019 Feb 18.

PMID:
30779198
6.

Newly Discovered Occurrences and Gene Tree of the Extracellular Globins and Linker Chains from the Giant Hexagonal Bilayer Hemoglobin in Metazoans.

Belato FA, Schrago CG, Coates CJ, Halanych KM, Costa-Paiva EM.

Genome Biol Evol. 2019 Mar 1;11(3):597-612. doi: 10.1093/gbe/evz012.

7.

Discovery of Novel Hemocyanin-Like Genes in Metazoans.

Costa-Paiva EM, Schrago CG, Coates CJ, Halanych KM.

Biol Bull. 2018 Dec;235(3):134-151. doi: 10.1086/700181. Epub 2018 Nov 5.

PMID:
30624121
8.

Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans.

Capellão RT, Costa-Paiva EM, Schrago CG.

Life (Basel). 2018 Oct 22;8(4). pii: E49. doi: 10.3390/life8040049.

9.
10.

Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda.

Freitas L, Mello B, Schrago CG.

J Evol Biol. 2018 Nov;31(11):1623-1631. doi: 10.1111/jeb.13355. Epub 2018 Aug 16.

PMID:
30058265
11.

Evaluating DNA evidence in a genetically complex population.

Hessab T, Aranha RS, Moura-Neto RS, Balding DJ, Schrago CG.

Forensic Sci Int Genet. 2018 Sep;36:141-147. doi: 10.1016/j.fsigen.2018.06.019. Epub 2018 Jun 28.

PMID:
29990826
12.

Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data.

Schrago CG, Aguiar BO, Mello B.

J Evol Biol. 2018 Oct;31(10):1477-1484. doi: 10.1111/jeb.13344. Epub 2018 Jul 18.

PMID:
29957887
13.

Conservation analysis and decomposition of residue correlation networks in the phospholipase A2 superfamily (PLA2s): Insights into the structure-function relationships of snake venom toxins.

Oliveira A, Bleicher L, Schrago CG, Silva Junior FP.

Toxicon. 2018 May;146:50-60. doi: 10.1016/j.toxicon.2018.03.013. Epub 2018 Mar 30.

14.

Impact of long-term chromosomal shuffling on the multispecies coalescent analysis of two anthropoid primate lineages.

Schrago CG, Mello B, Pereira AG, Furtado C, Seuánez HN.

Ecol Evol. 2017 Dec 20;8(2):1206-1216. doi: 10.1002/ece3.3736. eCollection 2018 Jan.

15.

Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians.

Costa-Paiva EM, Schrago CG, Halanych KM.

Genome Biol Evol. 2017 Oct 1;9(10):2580-2591. doi: 10.1093/gbe/evx181.

16.

Co-circulation of Araraquara and Juquitiba Hantavirus in Brazilian Cerrado.

Guterres A, de Oliveira RC, Fernandes J, Maia RM, Teixeira BR, Oliveira FCG, Bonvicino CR, D'Andrea PS, Schrago CG, de Lemos ERS.

Microb Ecol. 2018 Apr;75(3):783-789. doi: 10.1007/s00248-017-1061-4. Epub 2017 Aug 31.

PMID:
28856421
17.

Evolutionary analysis of Chironius snakes unveils cryptic diversity and provides clues to diversification in the Neotropics.

Hamdan B, Pereira AG, Loss-Oliveira L, Rödder D, Schrago CG.

Mol Phylogenet Evol. 2017 Nov;116:108-119. doi: 10.1016/j.ympev.2017.08.004. Epub 2017 Aug 10.

18.

Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles.

Pereira AG, Sterli J, Moreira FRR, Schrago CG.

Mol Phylogenet Evol. 2017 Aug;113:59-66. doi: 10.1016/j.ympev.2017.05.008. Epub 2017 May 10.

PMID:
28501611
19.

Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases.

Rossi MF, Mello B, Schrago CG.

Evol Bioinform Online. 2017 Apr 20;13:1176934317703401. doi: 10.1177/1176934317703401. eCollection 2017.

20.

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree.

Pereira AG, Schrago CG.

PeerJ. 2017 Apr 18;5:e3194. doi: 10.7717/peerj.3194. eCollection 2017.

21.

Discovery and evolution of novel hemerythrin genes in annelid worms.

Costa-Paiva EM, Whelan NV, Waits DS, Santos SR, Schrago CG, Halanych KM.

BMC Evol Biol. 2017 Mar 23;17(1):85. doi: 10.1186/s12862-017-0933-z.

22.

New bunya-like viruses: Highlighting their relations.

Guterres A, de Oliveira RC, Fernandes J, de Lemos ER, Schrago CG.

Infect Genet Evol. 2017 Apr;49:164-173. doi: 10.1016/j.meegid.2017.01.019. Epub 2017 Jan 19.

PMID:
28111322
23.

Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae).

Justi SA, Galvão C, Schrago CG.

PLoS Negl Trop Dis. 2016 Apr 8;10(4):e0004527. doi: 10.1371/journal.pntd.0004527. eCollection 2016 Apr.

24.

Evolution of Philodendron (Araceae) species in Neotropical biomes.

Loss-Oliveira L, Sakuragui C, Soares Mde L, Schrago CG.

PeerJ. 2016 Mar 24;4:e1744. doi: 10.7717/peerj.1744. eCollection 2016.

25.

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study.

Calvet G, Aguiar RS, Melo ASO, Sampaio SA, de Filippis I, Fabri A, Araujo ESM, de Sequeira PC, de Mendonça MCL, de Oliveira L, Tschoeke DA, Schrago CG, Thompson FL, Brasil P, Dos Santos FB, Nogueira RMR, Tanuri A, de Filippis AMB.

Lancet Infect Dis. 2016 Jun;16(6):653-660. doi: 10.1016/S1473-3099(16)00095-5. Epub 2016 Feb 18.

PMID:
26897108
26.

Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data.

Fernandes NM, Paiva Tda S, da Silva-Neto ID, Schlegel M, Schrago CG.

Mol Phylogenet Evol. 2016 Feb;95:229-46. doi: 10.1016/j.ympev.2015.10.030. Epub 2015 Nov 10.

27.

Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous.

Freitas LA, Russo CA, Voloch CM, Mutaquiha OC, Marques LP, Schrago CG.

PLoS One. 2015 Aug 5;10(8):e0134462. doi: 10.1371/journal.pone.0134462. eCollection 2015.

28.

Detection of different South American hantaviruses.

Guterres A, de Oliveira RC, Fernandes J, Schrago CG, de Lemos ER.

Virus Res. 2015 Dec 2;210:106-13. doi: 10.1016/j.virusres.2015.07.022. Epub 2015 Jul 26.

PMID:
26220480
29.

Characterization and comparative analysis of a simian foamy virus complete genome isolated from Brazilian capuchin monkeys.

Troncoso LL, Muniz CP, Siqueira JD, Curty G, Schrago CG, Augusto A, Fedullo L, Soares MA, Santos AF.

Virus Res. 2015 Oct 2;208:1-6. doi: 10.1016/j.virusres.2015.05.022. Epub 2015 Jun 3.

PMID:
26047587
30.

Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil.

Fernandes NM, Dias RJ, Schrago CG, Silva-Neto ID.

J Eukaryot Microbiol. 2015 Nov-Dec;62(6):722-32. doi: 10.1111/jeu.12228. Epub 2015 Jun 12.

PMID:
25944506
31.

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome.

Krsticevic FJ, Schrago CG, Carvalho AB.

G3 (Bethesda). 2015 Apr 9;5(6):1145-50. doi: 10.1534/g3.115.017277.

32.

Complete genome sequences of two new virus isolates associated with cotton blue disease resistance breaking in Brazil.

da Silva AK, Romanel E, Silva Tda F, Castilhos Y, Schrago CG, Galbieri R, Bélot JL, Vaslin MF.

Arch Virol. 2015 May;160(5):1371-4. doi: 10.1007/s00705-015-2380-8. Epub 2015 Mar 14.

PMID:
25772571
33.

Analysis of adaptive evolution in Lyssavirus genomes reveals pervasive diversifying selection during species diversification.

Voloch CM, Capellão RT, Mello B, Schrago CG.

Viruses. 2014 Nov 19;6(11):4465-78. doi: 10.3390/v6114465.

34.

Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict.

Schrago CG, Menezes AN, Furtado C, Bonvicino CR, Seuanez HN.

Genome Biol Evol. 2014 Nov 5;6(11):3105-14. doi: 10.1093/gbe/evu244.

35.

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages.

Soares AE, Schrago CG.

J Theor Biol. 2015 Jan 7;364:31-9. doi: 10.1016/j.jtbi.2014.09.004. Epub 2014 Sep 11.

PMID:
25218869
36.

Estimation of the ancestral effective population sizes of African great apes under different selection regimes.

Schrago CG.

Genetica. 2014 Aug;142(4):273-80. doi: 10.1007/s10709-014-9773-6. Epub 2014 Jun 13.

PMID:
24925265
37.

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates.

Mello B, Schrago CG.

Evol Bioinform Online. 2014 May 7;10:79-85. doi: 10.4137/EBO.S13908. eCollection 2014.

38.

The limiting distribution of the effective population size of the ancestor of humans and chimpanzees.

Schrago CG.

J Theor Biol. 2014 Sep 21;357:55-61. doi: 10.1016/j.jtbi.2014.05.009. Epub 2014 May 14.

PMID:
24834834
39.

Characterization of Juquitiba virus in Oligoryzomys fornesi from Brazilian Cerrado.

Guterres A, de Oliveira RC, Fernandes J, Strecht L, Casado F, Gomes de Oliveira FC, D'Andrea PS, Bonvicino CR, Schrago CG, Sampaio de Lemos ER.

Viruses. 2014 Mar 26;6(4):1473-82. doi: 10.3390/v6041473.

40.

Performance of genomic data sets on the estimation of the divergence time of New World and Old World anthropoids.

Schrago CG, Voloch CM.

Genet Mol Res. 2014 Mar 6;13(1):1425-37. doi: 10.4238/2014.March.6.1.

41.

Floral evolution of Philodendron subgenus Meconostigma (Araceae).

de Oliveira LL, Calazans LS, de Morais É, Mayo SJ, Schrago CG, Sakuragui CM.

PLoS One. 2014 Feb 26;9(2):e89701. doi: 10.1371/journal.pone.0089701. eCollection 2014.

42.

Morphology and phylogenetic position of an unusual Stentor polymorphus (Ciliophora: Heterotrichea) without symbiotic algae.

Fernandes NM, da Silva Neto ID, Schrago CG.

J Eukaryot Microbiol. 2014 May-Jun;61(3):305-12. doi: 10.1111/jeu.12108.

PMID:
24547923
43.
44.

Combining fossil and molecular data to date the diversification of New World Primates.

Schrago CG, Mello B, Soares AE.

J Evol Biol. 2013 Nov;26(11):2438-46. doi: 10.1111/jeb.12237. Epub 2013 Sep 10.

45.

Conventional simulation of biological sequences leads to a biased assessment of multi-Loci phylogenetic analysis.

Aguiar BO, Schrago CG.

Evol Bioinform Online. 2013 Aug 13;9:317-25. doi: 10.4137/EBO.S12483. eCollection 2013.

46.

Positive selection along the evolution of primate mitogenomes.

Menezes AN, Viana MC, Furtado C, Schrago CG, Seuánez HN.

Mitochondrion. 2013 Nov;13(6):846-51. doi: 10.1016/j.mito.2013.06.001. Epub 2013 Jun 10.

PMID:
23756226
47.

Phylogenetic analysis of the S segment from Juquitiba hantavirus: identification of two distinct lineages in Oligoryzomys nigripes.

Guterres A, de Oliveira RC, Fernandes J, D'Andrea PS, Bonvicino CR, Bragagnolo C, Guimarães GD, Almada GL, Machado RR, Lavocat M, Elkhoury Mda R, Schrago CG, de Lemos ER.

Infect Genet Evol. 2013 Aug;18:262-8. doi: 10.1016/j.meegid.2013.05.027. Epub 2013 Jun 7.

48.
49.

The precision of the hominid timescale estimated by relaxed clock methods.

Schrago CG, Voloch CM.

J Evol Biol. 2013 Apr;26(4):746-55. doi: 10.1111/jeb.12076. Epub 2013 Feb 26.

50.

Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills.

Elshahawi SI, Trindade-Silva AE, Hanora A, Han AW, Flores MS, Vizzoni V, Schrago CG, Soares CA, Concepcion GP, Distel DL, Schmidt EW, Haygood MG.

Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):E295-304. doi: 10.1073/pnas.1213892110. Epub 2013 Jan 3.

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