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Optimal Fixation Conditions and DNA Extraction Methods for MLPA Analysis on FFPE Tissue-Derived DNA.

Atanesyan L, Steenkamer MJ, Horstman A, Moelans CB, Schouten JP, Savola SP.

Am J Clin Pathol. 2017 Jan 1;147(1):60-68. doi: 10.1093/ajcp/aqw205.


Doublesex and mab-3 related transcription factor 1 (DMRT1) is a sex-specific genetic determinant of childhood-onset asthma and is expressed in testis and macrophages.

Schieck M, Schouten JP, Michel S, Suttner K, Toncheva AA, Gaertner VD, Illig T, Lipinski S, Franke A, Klintschar M, Kalayci O, Sahiner UM, Birben E, Melén E, Pershagen G, Freidin MB, Ogorodova LM, Granell R, Henderson J, Brunekreef B, Smit HA, Vogelberg C, von Berg A, Bufe A, Heinzmann A, Laub O, Rietschel E, Simma B, Genuneit J, Jonigk D, Postma DS, Koppelman GH, Vonk JM, Timens W, Boezen HM, Kabesch M.

J Allergy Clin Immunol. 2016 Aug;138(2):421-31. doi: 10.1016/j.jaci.2015.12.1305. Epub 2016 Feb 20.


BMI and lifetime changes in BMI and cancer mortality risk.

Taghizadeh N, Boezen HM, Schouten JP, Schröder CP, Elisabeth de Vries EG, Vonk JM.

PLoS One. 2015 Apr 16;10(4):e0125261. doi: 10.1371/journal.pone.0125261. eCollection 2015.


Objective allergy markers and risk of cancer mortality and hospitalization in a large population-based cohort.

Taghizadeh N, Vonk JM, Hospers JJ, Postma DS, de Vries EG, Schouten JP, Boezen HM.

Cancer Causes Control. 2015 Jan;26(1):99-109. doi: 10.1007/s10552-014-0489-9. Epub 2014 Nov 12.


Routine application of a novel MLPA-based first-line screening test uncovers clinically relevant copy number aberrations in haematological malignancies undetectable by conventional cytogenetics.

Konialis C, Savola S, Karapanou S, Markaki A, Karabela M, Polychronopoulou S, Ampatzidou M, Voulgarelis M, Viniou NA, Variami E, Koumarianou A, Zoi K, Hagnefelt B, Schouten JP, Pangalos C.

Hematology. 2014 Jun;19(4):217-24. doi: 10.1179/1607845413Y.0000000112. Epub 2013 Nov 25.


Tumor Vascular Morphology Undergoes Dramatic Changes during Outgrowth of B16 Melanoma While Proangiogenic Gene Expression Remains Unchanged.

Langenkamp E, Vom Hagen FM, Zwiers PJ, Moorlag HE, Schouten JP, Hammes HP, Gouw AS, Molema G.

ISRN Oncol. 2011;2011:409308. doi: 10.5402/2011/409308. Epub 2011 Dec 4.


Paradoxical responses after start of antimicrobial treatment in Mycobacterium ulcerans infection.

Nienhuis WA, Stienstra Y, Abass KM, Tuah W, Thompson WA, Awuah PC, Awuah-Boateng NY, Adjei O, Bretzel G, Schouten JP, van der Werf TS.

Clin Infect Dis. 2012 Feb 15;54(4):519-26. doi: 10.1093/cid/cir856. Epub 2011 Dec 7.


Latent cytomegalovirus infection is an independent risk factor for late graft failure in renal transplant recipients.

van Ree RM, de Vries AP, Zelle DM, de Vries LV, Oterdoom LH, Gans RO, Schouten JP, Lems SP, van Son WJ, Bakker SJ.

Med Sci Monit. 2011 Nov;17(11):CR609-617.


Mutation analysis of the CYP21A2 gene in the Iranian population.

Rabbani B, Mahdieh N, Ashtiani MT, Larijani B, Akbari MT, New M, Parsa A, Schouten JP, Rabbani A.

Genet Test Mol Biomarkers. 2012 Feb;16(2):82-90. doi: 10.1089/gtmb.2011.0099. Epub 2011 Oct 21.


A methylation assay for the detection of non-muscle-invasive bladder cancer (NMIBC) recurrences in voided urine.

Zuiverloon TC, Beukers W, van der Keur KA, Munoz JR, Bangma CH, Lingsma HF, Eijkemans MJ, Schouten JP, Zwarthoff EC.

BJU Int. 2012 Mar;109(6):941-8. doi: 10.1111/j.1464-410X.2011.10428.x. Epub 2011 Jul 14.


The need to change the method for defining mild airway obstruction.

Quanjer PH, Enright PL, Miller MR, Stocks J, Ruppel G, Swanney MP, Crapo RO, Pedersen OF, Falaschetti E, Schouten JP, Jensen RL.

Eur Respir J. 2011 Mar;37(3):720-2. doi: 10.1183/09031936.00135110. No abstract available.


[Open letter to the members of the GOLD committee].

Le groupe Pulmonaria, Quanjer PH, Enright PL, Stocks J, Ruppel G, Swanney MP, Crapo RO, Pedersen OF, Falaschetti E, Schouten JP, Jensen RL; ANZSRS : Australian and New Zealand Society of Respiratory; ARTP : Association for Respiratory Technology and Physiology; CAHAG : COPD and Astma Huisartsen Advies Groep (COPD and Asthma GP Advisory Group); SKL : Dutch Paediatric Repiratory Society; Education for Health, Warwick, UK; National Respiratory Training Center, Virginia, US; NHG : Nederlands Huisartsen Genootschap (Dutch Society of GPs); NVALT : Nederlandse Vereniging van Artsen voor Longziekten en Tuberculose (Dutch Thoracic Society); NVLA : Nederlandse Vereniging Longfunctie Analisten (Dutch Society of Respiratory Technicians); PCRS-UK : Primary Care Respiratory Society UK; Société de Physiologie; SPLF : Société de pneumologie de langue franc¸aise; SSMG : Société scientifique de médecine générale; WONCA: World Organization of Family Doctors.

Rev Mal Respir. 2010 Nov;27(9):1003-7. doi: 10.1016/j.rmr.2010.09.007. Epub 2010 Oct 8. French. No abstract available.


Multiplex Ligation-dependent Probe Amplification (MLPA®) for the detection of copy number variation in genomic sequences.

Eijk-Van Os PG, Schouten JP.

Methods Mol Biol. 2011;688:97-126. doi: 10.1007/978-1-60761-947-5_8.


Open letter: the need to change the method for defining mild airway obstruction.

Quanjer PH, Enright PL, Miller MR, Stocks J, Ruppel G, Swanney MP, Crapo RO, Pedersen OF, Falaschetti E, Schouten JP; Pulmonaria Group.

Prim Care Respir J. 2010 Sep;19(3):288-91. doi: 10.4104/pcrj.2010.00052. No abstract available.


Gender differences in asthma development and remission during transition through puberty: the TRacking Adolescents' Individual Lives Survey (TRAILS) study.

Vink NM, Postma DS, Schouten JP, Rosmalen JG, Boezen HM.

J Allergy Clin Immunol. 2010 Sep;126(3):498-504.e1-6. doi: 10.1016/j.jaci.2010.06.018.


Evaluation of multiplex ligation-dependent probe amplification as a method for the detection of copy number abnormalities in B-cell precursor acute lymphoblastic leukemia.

Schwab CJ, Jones LR, Morrison H, Ryan SL, Yigittop H, Schouten JP, Harrison CJ.

Genes Chromosomes Cancer. 2010 Dec;49(12):1104-13. doi: 10.1002/gcc.20818.


Influence of C-reactive protein and urinary protein excretion on prediction of graft failure and mortality by serum albumin in renal transplant recipients.

van Ree RM, Gross S, Zelle DM, van der Heide JJ, Schouten JP, van Son WJ, Gans RO, Bakker SJ.

Transplantation. 2010 May 27;89(10):1247-54. doi: 10.1097/TP.0b013e3181d720e3.


High plasma hemopexin activity is an independent risk factor for late graft failure in renal transplant recipients.

Krikken JA, van Ree RM, Klooster A, Seelen MA, Borghuis T, Lems SP, Schouten JP, Bakker WW, Gans RO, Navis G, Bakker SJ.

Transpl Int. 2010 Aug;23(8):805-12. doi: 10.1111/j.1432-2277.2010.01055.x. Epub 2010 Feb 9.


Antimicrobial treatment for early, limited Mycobacterium ulcerans infection: a randomised controlled trial.

Nienhuis WA, Stienstra Y, Thompson WA, Awuah PC, Abass KM, Tuah W, Awua-Boateng NY, Ampadu EO, Siegmund V, Schouten JP, Adjei O, Bretzel G, van der Werf TS.

Lancet. 2010 Feb 20;375(9715):664-72. doi: 10.1016/S0140-6736(09)61962-0. Epub 2010 Feb 3.


Detecting 22q11.2 deletions by use of multiplex ligation-dependent probe amplification on DNA from neonatal dried blood spot samples.

Sørensen KM, Agergaard P, Olesen C, Andersen PS, Larsen LA, Ostergaard JR, Schouten JP, Christiansen M.

J Mol Diagn. 2010 Mar;12(2):147-51. doi: 10.2353/jmoldx.2010.090099. Epub 2010 Jan 14.


What defines airflow obstruction in asthma?

Cerveri I, Corsico AG, Accordini S, Cervio G, Ansaldo E, Grosso A, Niniano R, Tsana Tegomo E, Antó JM, Künzli N, Janson C, Sunyer J, Svanes C, Heinrich J, Schouten JP, Wjst M, Pozzi E, de Marco R.

Eur Respir J. 2009 Sep;34(3):568-73. doi: 10.1183/09031936.00172908.


Level and course of FEV1 in relation to polymorphisms in NFE2L2 and KEAP1 in the general population.

Siedlinski M, Postma DS, Boer JM, van der Steege G, Schouten JP, Smit HA, Boezen HM.

Respir Res. 2009 Aug 11;10:73. doi: 10.1186/1465-9921-10-73.


Plasma procalcitonin is an independent predictor of graft failure late after renal transplantation.

van Ree RM, de Vries AP, Oterdoom LH, Seelen MA, Gansevoort RT, Schouten JP, Struck J, Navis G, Gans RO, van der Heide JJ, van Son WJ, Bakker SJ.

Transplantation. 2009 Jul 27;88(2):279-87. doi: 10.1097/TP.0b013e3181ac9ea0.


Multiplex ligation-dependent probe amplification technique for copy number analysis on small amounts of DNA material.

Sørensen KM, Andersen PS, Larsen LA, Schwartz M, Schouten JP, Nygren AO.

Anal Chem. 2008 Dec 1;80(23):9363-8. doi: 10.1021/ac801688c.


Urinary creatinine excretion, an indirect measure of muscle mass, is an independent predictor of cardiovascular disease and mortality in the general population.

Oterdoom LH, Gansevoort RT, Schouten JP, de Jong PE, Gans RO, Bakker SJ.

Atherosclerosis. 2009 Dec;207(2):534-40. doi: 10.1016/j.atherosclerosis.2009.05.010. Epub 2009 May 21.


Skin-autofluorescence is an independent predictor of graft loss in renal transplant recipients.

Hartog JW, Gross S, Oterdoom LH, van Ree RM, de Vries AP, Smit AJ, Schouten JP, Nawroth PP, Gans RO, van Son WJ, Bierhaus A, Bakker SJ.

Transplantation. 2009 Apr 15;87(7):1069-77. doi: 10.1097/TP.0b013e31819d3173.


Test-retest reliability of the Food Allergy Quality of Life Questionnaires (FAQLQ) for children, adolescents and adults.

van der Velde JL, Flokstra-de Blok BM, Vlieg-Boerstra BJ, Oude Elberink JN, Schouten JP, Dunngalvin A, Hourihane JO, Duiverman EJ, Dubois AE.

Qual Life Res. 2009 Mar;18(2):245-51. doi: 10.1007/s11136-008-9434-2. Epub 2009 Jan 14.


Detection of alpha-thalassemia in China by using multiplex ligation-dependent probe amplification.

Liu JZ, Han H, Schouten JP, Wang LR, Fan XP, Duarte HB, Zhu CJ, Cai R, Xiao B, Wang QT.

Hemoglobin. 2008;32(6):561-71. doi: 10.1080/03630260802508111.


Using the lower limit of normal for the FEV1/FVC ratio reduces the misclassification of airway obstruction.

Swanney MP, Ruppel G, Enright PL, Pedersen OF, Crapo RO, Miller MR, Jensen RL, Falaschetti E, Schouten JP, Hankinson JL, Stocks J, Quanjer PH.

Thorax. 2008 Dec;63(12):1046-51. doi: 10.1136/thx.2008.098483. Epub 2008 Sep 11.


Fibromuscular differentiation in deeply infiltrating endometriosis is a reaction of resident fibroblasts to the presence of ectopic endometrium.

van Kaam KJ, Schouten JP, Nap AW, Dunselman GA, Groothuis PG.

Hum Reprod. 2008 Dec;23(12):2692-700. doi: 10.1093/humrep/den153. Epub 2008 Aug 20.


Urinary creatinine excretion reflecting muscle mass is a predictor of mortality and graft loss in renal transplant recipients.

Oterdoom LH, van Ree RM, de Vries AP, Gansevoort RT, Schouten JP, van Son WJ, Homan van der Heide JJ, Navis G, de Jong PE, Gans RO, Bakker SJ.

Transplantation. 2008 Aug 15;86(3):391-8. doi: 10.1097/TP.0b013e3181788aea.


Pharmacogenomics and outcome of asthma: no clinical application for long-term steroid effects by CRHR1 polymorphisms.

Dijkstra A, Koppelman GH, Vonk JM, Bruinenberg M, Schouten JP, Postma DS.

J Allergy Clin Immunol. 2008 Jun;121(6):1510-3. doi: 10.1016/j.jaci.2008.04.015. No abstract available.


Underestimation of airflow obstruction among young adults using FEV1/FVC <70% as a fixed cut-off: a longitudinal evaluation of clinical and functional outcomes.

Cerveri I, Corsico AG, Accordini S, Niniano R, Ansaldo E, Antó JM, Künzli N, Janson C, Sunyer J, Jarvis D, Svanes C, Gislason T, Heinrich J, Schouten JP, Wjst M, Burney P, de Marco R.

Thorax. 2008 Dec;63(12):1040-5. doi: 10.1136/thx.2008.095554. Epub 2008 May 20.


Sequential gene promoter methylation during HPV-induced cervical carcinogenesis.

Henken FE, Wilting SM, Overmeer RM, van Rietschoten JG, Nygren AO, Errami A, Schouten JP, Meijer CJ, Snijders PJ, Steenbergen RD.

Br J Cancer. 2007 Nov 19;97(10):1457-64. Epub 2007 Oct 30.


Effects of 4 months of smoking in mice with ovalbumin-induced airway inflammation.

Melgert BN, Timens W, Kerstjens HA, Geerlings M, Luinge MA, Schouten JP, Postma DS, Hylkema MN.

Clin Exp Allergy. 2007 Dec;37(12):1798-808. Epub 2007 Oct 16.


Diagnosis of COPD.

Falaschetti E, Swanney MP, Crapo RO, Hankinson JL, Jensen RL, Pedersen OF, Quanjer PH, Ruppel GL, Schouten JP.

Thorax. 2007 Oct;62(10):924-5; author reply 925. No abstract available.


DNA profiling of primary serous ovarian and fallopian tube carcinomas with array comparative genomic hybridization and multiplex ligation-dependent probe amplification.

Nowee ME, Snijders AM, Rockx DA, de Wit RM, Kosma VM, Hämäläinen K, Schouten JP, Verheijen RH, van Diest PJ, Albertson DG, Dorsman JC.

J Pathol. 2007 Sep;213(1):46-55.


Selective induction of chemotherapy resistance of mammary tumors in a conditional mouse model for hereditary breast cancer.

Rottenberg S, Nygren AO, Pajic M, van Leeuwen FW, van der Heijden I, van de Wetering K, Liu X, de Visser KE, Gilhuijs KG, van Tellingen O, Schouten JP, Jonkers J, Borst P.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12117-22. Epub 2007 Jul 11.


Activated intrinsic apoptosis pathway is a key related prognostic parameter in acute myeloid leukemia.

Hess CJ, Berkhof J, Denkers F, Ossenkoppele GJ, Schouten JP, Oudejans JJ, Waisfisz Q, Schuurhuis GJ.

J Clin Oncol. 2007 Apr 1;25(10):1209-15.


Quantification of the methylation status of the PWS/AS imprinted region: comparison of two approaches based on bisulfite sequencing and methylation-sensitive MLPA.

Dikow N, Nygren AO, Schouten JP, Hartmann C, Krämer N, Janssen B, Zschocke J.

Mol Cell Probes. 2007 Jun;21(3):208-15. Epub 2007 Jan 12.


Avoiding bias in the annualized rate of change of FEV1.

Quanjer PH, Schouten JP, Miller MR, Ruppel G.

Am J Respir Crit Care Med. 2007 Feb 1;175(3):291-2; author reply 292. No abstract available.


Incidence of chronic obstructive pulmonary disease in a cohort of young adults according to the presence of chronic cough and phlegm.

de Marco R, Accordini S, Cerveri I, Corsico A, Antó JM, Künzli N, Janson C, Sunyer J, Jarvis D, Chinn S, Vermeire P, Svanes C, Ackermann-Liebrich U, Gislason T, Heinrich J, Leynaert B, Neukirch F, Schouten JP, Wjst M, Burney P.

Am J Respir Crit Care Med. 2007 Jan 1;175(1):32-9. Epub 2006 Sep 28.


Progesterone receptor polymorphism +331G/A is associated with a decreased risk of deep infiltrating endometriosis.

van Kaam KJ, Romano A, Schouten JP, Dunselman GA, Groothuis PG.

Hum Reprod. 2007 Jan;22(1):129-35. Epub 2006 Aug 18.


Preventive intervention possibilities in radiotherapy- and chemotherapy-induced oral mucositis: results of meta-analyses.

Stokman MA, Spijkervet FK, Boezen HM, Schouten JP, Roodenburg JL, de Vries EG.

J Dent Res. 2006 Aug;85(8):690-700. Review.


Epigenetic events of disease progression in head and neck squamous cell carcinoma.

Worsham MJ, Chen KM, Meduri V, Nygren AO, Errami A, Schouten JP, Benninger MS.

Arch Otolaryngol Head Neck Surg. 2006 Jun;132(6):668-77.


Predictors of COPD symptoms: does the sex of the patient matter?

Watson L, Schouten JP, Löfdahl CG, Pride NB, Laitinen LA, Postma DS; European Respiratory Society Study on Chronic Obstructive Pulmonary Disease.

Eur Respir J. 2006 Aug;28(2):311-8. Epub 2006 May 17.


Iodine-123 metaiodobenzylguanidine scintigraphy in localising phaeochromocytomas--experience and meta-analysis.

Van Der Horst-Schrivers AN, Jager PL, Boezen HM, Schouten JP, Kema IP, Links TP.

Anticancer Res. 2006 Mar-Apr;26(2B):1599-604.


Fine-mapping loss of gene architecture at the CDKN2B (p15INK4b), CDKN2A (p14ARF, p16INK4a), and MTAP genes in head and neck squamous cell carcinoma.

Worsham MJ, Chen KM, Tiwari N, Pals G, Schouten JP, Sethi S, Benninger MS.

Arch Otolaryngol Head Neck Surg. 2006 Apr;132(4):409-15.


Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix.

Wilting SM, Snijders PJ, Meijer GA, Ylstra B, van den Ijssel PR, Snijders AM, Albertson DG, Coffa J, Schouten JP, van de Wiel MA, Meijer CJ, Steenbergen RD.

J Pathol. 2006 Jun;209(2):220-30.


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