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Items: 1 to 50 of 92

1.

A recap of RNA recapping.

Trotman JB, Schoenberg DR.

Wiley Interdiscip Rev RNA. 2019 Jan;10(1):e1504. doi: 10.1002/wrna.1504. Epub 2018 Sep 5. Review.

PMID:
30252202
2.

RNA-binding proteins and heat-shock protein 90 are constituents of the cytoplasmic capping enzyme interactome.

Trotman JB, Agana BA, Giltmier AJ, Wysocki VH, Schoenberg DR.

J Biol Chem. 2018 Oct 26;293(43):16596-16607. doi: 10.1074/jbc.RA118.004973. Epub 2018 Aug 30.

PMID:
30166341
3.

RNA Cap Methyltransferase Activity Assay.

Trotman JB, Schoenberg DR.

Bio Protoc. 2018 Mar 20;8(6). pii: e2767. doi: 10.21769/BioProtoc.2767.

4.

Loss of fragile histidine triad (Fhit) protein expression alters the translation of cancer-associated mRNAs.

Kiss DL, Baez WD, Huebner K, Bundschuh R, Schoenberg DR.

BMC Res Notes. 2018 Mar 14;11(1):178. doi: 10.1186/s13104-018-3278-9.

5.

Impact of FHIT loss on the translation of cancer-associated mRNAs.

Kiss DL, Baez W, Huebner K, Bundschuh R, Schoenberg DR.

Mol Cancer. 2017 Dec 28;16(1):179. doi: 10.1186/s12943-017-0749-x.

6.

RNA guanine-7 methyltransferase catalyzes the methylation of cytoplasmically recapped RNAs.

Trotman JB, Giltmier AJ, Mukherjee C, Schoenberg DR.

Nucleic Acids Res. 2017 Oct 13;45(18):10726-10739. doi: 10.1093/nar/gkx801.

7.

Identification of Fhit as a post-transcriptional effector of Thymidine Kinase 1 expression.

Kiss DL, Waters CE, Ouda IM, Saldivar JC, Karras JR, Amin ZA, Mahrous S, Druck T, Bundschuh RA, Schoenberg DR, Huebner K.

Biochim Biophys Acta Gene Regul Mech. 2017 Mar;1860(3):374-382. doi: 10.1016/j.bbagrm.2017.01.005. Epub 2017 Jan 14.

8.

The human PMR1 endonuclease stimulates cell motility by down regulating miR-200 family microRNAs.

Gu SQ, Gallego-Perez D, McClory SP, Shi J, Han J, Lee LJ, Schoenberg DR.

Nucleic Acids Res. 2016 Jul 8;44(12):5811-9. doi: 10.1093/nar/gkw497. Epub 2016 Jun 1.

9.

Cap homeostasis is independent of poly(A) tail length.

Kiss DL, Oman KM, Dougherty JA, Mukherjee C, Bundschuh R, Schoenberg DR.

Nucleic Acids Res. 2016 Jan 8;44(1):304-14. doi: 10.1093/nar/gkv1460. Epub 2015 Dec 15.

10.

Corrigendum: Translation from a DMD exon 5 IRES results in a functional dystrophin isoform that attenuates dystrophinopathy in humans and mice.

Wein N, Vulin A, Falzarano MS, Szigyarto CA, Maiti B, Findlay A, Heller KN, Uhlén M, Bakthavachalu B, Messina S, Vita G, Passarelli C, Brioschi S, Bovolenta M, Neri M, Gualandi F, Wilton SD, Rodino-Klapac LR, Yang L, Dunn DM, Schoenberg DR, Weiss RB, Howard MT, Ferlini A, Flanigan KM.

Nat Med. 2015 May;21(5):537. doi: 10.1038/nm0515-537c. No abstract available.

PMID:
25951531
11.

Corrigendum: Translation from a DMD exon 5 IRES results in a functional dystrophin isoform that attenuates dystrophinopathy in humans and mice.

Wein N, Vulin A, Falzarano MS, Szigyarto CA, Maiti B, Findlay A, Heller KN, Uhlén M, Bakthavachalu B, Messina S, Vita G, Passarelli C, Gualandi F, Wilton SD, Rodino-Klapac LR, Yang L, Dunn DM, Schoenberg DR, Weiss RB, Howard MT, Ferlini A, Flanigan KM.

Nat Med. 2015 Apr;21(4):414. doi: 10.1038/nm0415-414b. No abstract available.

PMID:
25849273
12.

Uncapped 5' ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags.

Kiss DL, Oman K, Bundschuh R, Schoenberg DR.

FEBS Lett. 2015 Jan 30;589(3):279-84. doi: 10.1016/j.febslet.2014.12.009. Epub 2014 Dec 23.

13.

The cytoplasmic capping complex assembles on adapter protein nck1 bound to the proline-rich C-terminus of Mammalian capping enzyme.

Mukherjee C, Bakthavachalu B, Schoenberg DR.

PLoS Biol. 2014 Aug 19;12(8):e1001933. doi: 10.1371/journal.pbio.1001933. eCollection 2014 Aug.

14.

Translation from a DMD exon 5 IRES results in a functional dystrophin isoform that attenuates dystrophinopathy in humans and mice.

Wein N, Vulin A, Falzarano MS, Szigyarto CA, Maiti B, Findlay A, Heller KN, Uhlén M, Bakthavachalu B, Messina S, Vita G, Passarelli C, Brioschi S, Bovolenta M, Neri M, Gualandi F, Wilton SD, Rodino-Klapac LR, Yang L, Dunn DM, Schoenberg DR, Weiss RB, Howard MT, Ferlini A, Flanigan KM.

Nat Med. 2014 Sep;20(9):992-1000. doi: 10.1038/nm.3628. Epub 2014 Aug 10. Erratum in: Nat Med. 2015 Apr;21(4):414. Erratum in: Nat Med. 2015 May;21(5):537. Brioschi, Simona [added]; Bovolenta, Matteo [added]; Neri, Marcella [added].

15.

Quantitative analysis of deadenylation-independent mRNA decay by a modified MBRACE assay.

Dougherty JA, Mascarenhas R, Schoenberg DR.

Methods Mol Biol. 2014;1125:353-71. doi: 10.1007/978-1-62703-971-0_28.

16.

Poly(A) polymerase-based poly(A) length assay.

Patil DP, Bakthavachalu B, Schoenberg DR.

Methods Mol Biol. 2014;1125:13-23. doi: 10.1007/978-1-62703-971-0_2.

17.

SMG6 cleavage generates metastable decay intermediates from nonsense-containing β-globin mRNA.

Mascarenhas R, Dougherty JA, Schoenberg DR.

PLoS One. 2013 Sep 25;8(9):e74791. doi: 10.1371/journal.pone.0074791. eCollection 2013.

18.

Identification of cytoplasmic capping targets reveals a role for cap homeostasis in translation and mRNA stability.

Mukherjee C, Patil DP, Kennedy BA, Bakthavachalu B, Bundschuh R, Schoenberg DR.

Cell Rep. 2012 Sep 27;2(3):674-84. doi: 10.1016/j.celrep.2012.07.011. Epub 2012 Aug 23.

19.

Identification of the human PMR1 mRNA endonuclease as an alternatively processed product of the gene for peroxidasin-like protein.

Gu SQ, Bakthavachalu B, Han J, Patil DP, Otsuka Y, Guda C, Schoenberg DR.

RNA. 2012 Jun;18(6):1186-96. doi: 10.1261/rna.031369.111. Epub 2012 Apr 27.

20.

Regulation of cytoplasmic mRNA decay.

Schoenberg DR, Maquat LE.

Nat Rev Genet. 2012 Mar 6;13(4):246-59. doi: 10.1038/nrg3160. Review. Erratum in: Nat Rev Genet. 2012 Jun;13(6):448.

21.

Mycobacterium tuberculosis lipomannan blocks TNF biosynthesis by regulating macrophage MAPK-activated protein kinase 2 (MK2) and microRNA miR-125b.

Rajaram MV, Ni B, Morris JD, Brooks MN, Carlson TK, Bakthavachalu B, Schoenberg DR, Torrelles JB, Schlesinger LS.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17408-13. doi: 10.1073/pnas.1112660108. Epub 2011 Oct 3.

22.

Mechanisms of endonuclease-mediated mRNA decay.

Schoenberg DR.

Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):582-600. doi: 10.1002/wrna.78. Epub 2011 Feb 10. Review.

23.

KSRP-PMR1-exosome association determines parathyroid hormone mRNA levels and stability in transfected cells.

Nechama M, Peng Y, Bell O, Briata P, Gherzi R, Schoenberg DR, Naveh-Many T.

BMC Cell Biol. 2009 Sep 23;10:70. doi: 10.1186/1471-2121-10-70.

24.

Re-capping the message.

Schoenberg DR, Maquat LE.

Trends Biochem Sci. 2009 Sep;34(9):435-42. doi: 10.1016/j.tibs.2009.05.003. Epub 2009 Sep 2. Review.

25.

RNA processing defects associated with diseases of the motor neuron.

Kolb SJ, Sutton S, Schoenberg DR.

Muscle Nerve. 2010 Jan;41(1):5-17. doi: 10.1002/mus.21428. Review.

26.

Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA.

Otsuka Y, Kedersha NL, Schoenberg DR.

Mol Cell Biol. 2009 Apr;29(8):2155-67. doi: 10.1128/MCB.01325-08. Epub 2009 Feb 17.

27.

The cytoskeleton-associated Ena/VASP proteins are unanticipated partners of the PMR1 mRNA endonuclease.

Peng Y, Murray EL, Sarkar M, Liu X, Schoenberg DR.

RNA. 2009 Apr;15(4):576-87. doi: 10.1261/rna.1206209. Epub 2009 Feb 17.

28.

Assays for determining poly(A) tail length and the polarity of mRNA decay in mammalian cells.

Murray EL, Schoenberg DR.

Methods Enzymol. 2008;448:483-504. doi: 10.1016/S0076-6879(08)02624-4.

29.

Approaches for studying PMR1 endonuclease-mediated mRNA decay.

Otsuka Y, Schoenberg DR.

Methods Enzymol. 2008;448:241-63. doi: 10.1016/S0076-6879(08)02613-X.

30.

Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma.

Jazdzewski K, Murray EL, Franssila K, Jarzab B, Schoenberg DR, de la Chapelle A.

Proc Natl Acad Sci U S A. 2008 May 20;105(20):7269-74. doi: 10.1073/pnas.0802682105. Epub 2008 May 12.

31.

Application of the Invader RNA assay to the polarity of vertebrate mRNA decay.

Murray EL, Schoenberg DR.

Methods Mol Biol. 2008;419:259-76. doi: 10.1007/978-1-59745-033-1_18.

32.

In vivo and in vitro analysis of poly(A) length effects on mRNA translation.

Peng J, Murray EL, Schoenberg DR.

Methods Mol Biol. 2008;419:215-30. doi: 10.1007/978-1-59745-033-1_15.

33.
34.

The end defines the means in bacterial mRNA decay.

Schoenberg DR.

Nat Chem Biol. 2007 Sep;3(9):535-6. No abstract available.

35.

c-Src activates endonuclease-mediated mRNA decay.

Peng Y, Schoenberg DR.

Mol Cell. 2007 Mar 9;25(5):779-87.

36.

A+U-rich instability elements differentially activate 5'-3' and 3'-5' mRNA decay.

Murray EL, Schoenberg DR.

Mol Cell Biol. 2007 Apr;27(8):2791-9. Epub 2007 Feb 12.

37.

Polysome-bound endonuclease PMR1 is targeted to stress granules via stress-specific binding to TIA-1.

Yang F, Peng Y, Murray EL, Otsuka Y, Kedersha N, Schoenberg DR.

Mol Cell Biol. 2006 Dec;26(23):8803-13. Epub 2006 Sep 18.

38.

RNA helicase A is necessary for translation of selected messenger RNAs.

Hartman TR, Qian S, Bolinger C, Fernandez S, Schoenberg DR, Boris-Lawrie K.

Nat Struct Mol Biol. 2006 Jun;13(6):509-16. Epub 2006 May 7.

PMID:
16680162
39.

A role for the eIF4E-binding protein 4E-T in P-body formation and mRNA decay.

Ferraiuolo MA, Basak S, Dostie J, Murray EL, Schoenberg DR, Sonenberg N.

J Cell Biol. 2005 Sep 12;170(6):913-24. Erratum in: J Cell Biol. 2005 Oct 10;171(1):175.

41.
42.

Microsomal triglyceride transfer protein promotes the secretion of Xenopus laevis vitellogenin A1.

Sellers JA, Hou L, Schoenberg DR, Batistuzzo de Medeiros SR, Wahli W, Shelness GS.

J Biol Chem. 2005 Apr 8;280(14):13902-5. Epub 2005 Jan 27.

44.
46.

U2AF modulates poly(A) length control by the poly(A)-limiting element.

Gu H, Schoenberg DR.

Nucleic Acids Res. 2003 Nov 1;31(21):6264-71.

48.

Beta -Globin mRNA decay in erythroid cells: UG site-preferred endonucleolytic cleavage that is augmented by a premature termination codon.

Stevens A, Wang Y, Bremer K, Zhang J, Hoepfner R, Antoniou M, Schoenberg DR, Maquat LE.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12741-6. Epub 2002 Sep 19.

49.

New ways of initiating translation in eukaryotes.

Schneider R, Agol VI, Andino R, Bayard F, Cavener DR, Chappell SA, Chen JJ, Darlix JL, Dasgupta A, Donzé O, Duncan R, Elroy-Stein O, Farabaugh PJ, Filipowicz W, Gale M Jr, Gehrke L, Goldman E, Groner Y, Harford JB, Hatzglou M, He B, Hellen CU, Hentze MW, Hershey J, Hershey P, Hohn T, Holcik M, Hunter CP, Igarashi K, Jackson R, Jagus R, Jefferson LS, Joshi B, Kaempfer R, Katze M, Kaufman RJ, Kiledjian M, Kimball SR, Kimchi A, Kirkegaard K, Koromilas AE, Krug RM, Kruys V, Lamphear BJ, Lemon S, Lloyd RE, Maquat LE, Martinez-Salas E, Mathews MB, Mauro VP, Miyamoto S, Mohr I, Morris DR, Moss EG, Nakashima N, Palmenberg A, Parkin NT, Pe'ery T, Pelletier J, Peltz S, Pestova TV, Pilipenko EV, Prats AC, Racaniello V, Read GS, Rhoads RE, Richter JD, Rivera-Pomar R, Rouault T, Sachs A, Sarnow P, Scheper GC, Schiff L, Schoenberg DR, Semler BL, Siddiqui A, Skern T, Sonenberg N, Sossin W, Standart N, Tahara SM, Thomas AA, Toulmé JJ, Wilusz J, Wimmer E, Witherell G, Wormington M.

Mol Cell Biol. 2001 Dec;21(23):8238-46. No abstract available.

50.

Polysomal ribonuclease 1.

Cunningham KS, Hanson MN, Schoenberg DR.

Methods Enzymol. 2001;342:28-44. No abstract available.

PMID:
11586900

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