Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 42

1.

Bioinformatics: scalability, capabilities and training in the data-driven era.

Schneider MV.

Brief Bioinform. 2019 Mar 25;20(2):735-736. doi: 10.1093/bib/bbz053. No abstract available.

PMID:
31100108
2.

Congenital human toxoplasmosis caused by non-clonal Toxoplasma gondii genotypes in Argentina.

Pardini L, Bernstein M, Carral LA, Kaufer FJ, Dellarupe A, Gos ML, Campero LM, Moré G, Messina MT, Schneider MV, Freuler CB, Durlach RA, Unzaga JM, Venturini MC.

Parasitol Int. 2019 Feb;68(1):48-52. doi: 10.1016/j.parint.2018.10.002. Epub 2018 Oct 7.

PMID:
30304711
3.

Best practice data life cycle approaches for the life sciences.

Griffin PC, Khadake J, LeMay KS, Lewis SE, Orchard S, Pask A, Pope B, Roessner U, Russell K, Seemann T, Treloar A, Tyagi S, Christiansen JH, Dayalan S, Gladman S, Hangartner SB, Hayden HL, Ho WWH, Keeble-Gagnère G, Korhonen PK, Neish P, Prestes PR, Richardson MF, Watson-Haigh NS, Wyres KL, Young ND, Schneider MV.

Version 2. F1000Res. 2017 Aug 31 [revised 2018 Jan 1];6:1618. doi: 10.12688/f1000research.12344.2. eCollection 2017.

4.

[Prevalence of anti-Toxoplasma gondii antibodies in blood donors in Buenos Aires city, from 1967 to 2017].

Kaufer FJ, Carral LA, Messina MT, Schneider MV, Méndez M, Herrera L, Freuler CB, Durlach RA.

Medicina (B Aires). 2017;77(6):475-480. Spanish.

5.

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Schneider MV, Griffin PC, Tyagi S, Flannery M, Dayalan S, Gladman S, Watson-Haigh N, Bayer PE, Charleston M, Cooke I, Cook R, Edwards RJ, Edwards D, Gorse D, McConville M, Powell D, Wilkins MR, Lonie A.

Brief Bioinform. 2019 Mar 22;20(2):384-389. doi: 10.1093/bib/bbx071.

6.

A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning.

Via A, Attwood TK, Fernandes PL, Morgan SL, Schneider MV, Palagi PM, Rustici G, Tractenberg RE.

Brief Bioinform. 2019 Mar 22;20(2):405-415. doi: 10.1093/bib/bbx112.

7.

A global perspective on evolving bioinformatics and data science training needs.

Attwood TK, Blackford S, Brazas MD, Davies A, Schneider MV.

Brief Bioinform. 2019 Mar 22;20(2):398-404. doi: 10.1093/bib/bbx100.

8.

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017.

9.

Next generation of network medicine: interdisciplinary signaling approaches.

Korcsmaros T, Schneider MV, Superti-Furga G.

Integr Biol (Camb). 2017 Feb 20;9(2):97-108. doi: 10.1039/c6ib00215c. Review.

PMID:
28106223
10.

Data integration in biological research: an overview.

Lapatas V, Stefanidakis M, Jimenez RC, Via A, Schneider MV.

J Biol Res (Thessalon). 2015 Sep 2;22(1):9. doi: 10.1186/s40709-015-0032-5. eCollection 2015 Dec. Review.

11.

Anatomy of BioJS, an open source community for the life sciences.

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M.

Elife. 2015 Jul 8;4. doi: 10.7554/eLife.07009.

12.

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium.

PLoS Comput Biol. 2015 May 14;11(5):e1004281. doi: 10.1371/journal.pcbi.1004281. eCollection 2015 May. No abstract available.

13.

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium.

PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143. eCollection 2015 Apr. Erratum in: PLoS Comput Biol. 2015 May;11(5):e1004281. Atwood, Teresa K [corrected to Attwood, Teresa K].

14.

An open science peer review oath.

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop.

Version 2. F1000Res. 2014 Nov 12 [revised 2015 Jan 1];3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014.

15.

Live genomics for pathogen monitoring in public health.

D'Auria G, Schneider MV, Moya A.

Pathogens. 2014 Jan 21;3(1):93-108. doi: 10.3390/pathogens3010093.

16.

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK.

Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4.

17.

A quick guide to genomics and bioinformatics training for clinical and public audiences.

Brazas MD, Lewitter F, Schneider MV, van Gelder CW, Palagi PM.

PLoS Comput Biol. 2014 Apr 10;10(4):e1003510. doi: 10.1371/journal.pcbi.1003510. eCollection 2014 Apr. No abstract available.

18.

Bioinformatics curriculum guidelines: toward a definition of core competencies.

Welch L, Lewitter F, Schwartz R, Brooksbank C, Radivojac P, Gaeta B, Schneider MV.

PLoS Comput Biol. 2014 Mar 6;10(3):e1003496. doi: 10.1371/journal.pcbi.1003496. eCollection 2014 Mar. No abstract available.

19.

International, interdisciplinary, multi-level bioinformatics training and education.

Schneider MV, Jungck JR.

Brief Bioinform. 2013 Sep;14(5):527. doi: 10.1093/bib/bbt064. No abstract available.

PMID:
24030777
20.

Best practices in bioinformatics training for life scientists.

Via A, Blicher T, Bongcam-Rudloff E, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, Fernandes PL, van Gelder C, Jacob J, Jimenez RC, Loveland J, Moran F, Mulder N, Nyrönen T, Rother K, Schneider MV, Attwood TK.

Brief Bioinform. 2013 Sep;14(5):528-37. doi: 10.1093/bib/bbt043. Epub 2013 Jun 25.

21.

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.

Li JW, Bolser D, Manske M, Giorgi FM, Vyahhi N, Usadel B, Clavijo BJ, Chan TF, Wong N, Zerbino D, Schneider MV.

Brief Bioinform. 2013 Sep;14(5):548-55. doi: 10.1093/bib/bbt045. Epub 2013 Jun 21.

22.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

23.

Defining systems biology: a brief overview of the term and field.

Schneider MV.

Methods Mol Biol. 2013;1021:1-11. doi: 10.1007/978-1-62703-450-0_1. Review.

PMID:
23715977
24.

Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Watson-Haigh NS, Shang CA, Haimel M, Kostadima M, Loos R, Deshpande N, Duesing K, Li X, McGrath A, McWilliam S, Michnowicz S, Moolhuijzen P, Quenette S, Revote JN, Tyagi S, Schneider MV.

Brief Bioinform. 2013 Sep;14(5):563-74. doi: 10.1093/bib/bbt022. Epub 2013 Mar 29.

25.

Teaching the fundamentals of biological data integration using classroom games.

Schneider MV, Jimenez RC.

PLoS Comput Biol. 2012;8(12):e1002789. doi: 10.1371/journal.pcbi.1002789. Epub 2012 Dec 27.

26.

Increase in Science Research Commitment in a Didactic and Laboratory-Based Program Targeted to Gifted Minority High-School Students.

Fraleigh-Lohrfink KJ, Schneider MV, Whittington D, Feinberg AP.

Roeper Rev. 2013;35(1):18-26. doi: 10.1080/02783193.2013.740599. Epub 2013 Jan 10.

27.

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.

Brief Bioinform. 2012 May;13(3):383-9. doi: 10.1093/bib/bbr064. Epub 2011 Nov 22. Review.

28.

Ten simple rules for developing a short bioinformatics training course.

Via A, De Las Rivas J, Attwood TK, Landsman D, Brazas MD, Leunissen JA, Tramontano A, Schneider MV.

PLoS Comput Biol. 2011 Oct;7(10):e1002245. doi: 10.1371/journal.pcbi.1002245. Epub 2011 Oct 27. No abstract available.

29.

Omics technologies, data and bioinformatics principles.

Schneider MV, Orchard S.

Methods Mol Biol. 2011;719:3-30. doi: 10.1007/978-1-61779-027-0_1. Review.

PMID:
21370077
30.

Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.

Wright VA, Vaughan BW, Laurent T, Lopez R, Brooksbank C, Schneider MV.

Brief Bioinform. 2010 Nov;11(6):552-62. doi: 10.1093/bib/bbq023. Epub 2010 Jul 2. Review.

PMID:
20601435
31.

Bioinformatics training: a review of challenges, actions and support requirements.

Schneider MV, Watson J, Attwood T, Rother K, Budd A, McDowall J, Via A, Fernandes P, Nyronen T, Blicher T, Jones P, Blatter MC, De Las Rivas J, Judge DP, van der Gool W, Brooksbank C.

Brief Bioinform. 2010 Nov;11(6):544-51. doi: 10.1093/bib/bbq021. Epub 2010 Jun 18. Review.

PMID:
20562256
32.

Divergent selection and phenotypic plasticity during incipient speciation in Lake Victoria cichlid fish.

Magalhaes IS, Mwaiko S, Schneider MV, Seehausen O.

J Evol Biol. 2009 Feb;22(2):260-74. doi: 10.1111/j.1420-9101.2008.01637.x. Epub 2008 Nov 13.

33.

Speciation through sensory drive in cichlid fish.

Seehausen O, Terai Y, Magalhaes IS, Carleton KL, Mrosso HD, Miyagi R, van der Sluijs I, Schneider MV, Maan ME, Tachida H, Imai H, Okada N.

Nature. 2008 Oct 2;455(7213):620-6. doi: 10.1038/nature07285.

PMID:
18833272
34.

The male sex pheromone of the butterfly Bicyclus anynana: towards an evolutionary analysis.

Nieberding CM, de Vos H, Schneider MV, Lassance JM, Estramil N, Andersson J, Bång J, Hedenström E, Löfstedt C, Brakefield PM.

PLoS One. 2008 Jul 23;3(7):e2751. doi: 10.1371/journal.pone.0002751.

35.

MINT: the Molecular INTeraction database.

Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D572-4. Epub 2006 Nov 29.

36.

Comparative interactomics.

Cesareni G, Ceol A, Gavrila C, Palazzi LM, Persico M, Schneider MV.

FEBS Lett. 2005 Mar 21;579(8):1828-33. Review.

37.
38.

Genetic analysis of two distinct reproductive strategies in sexual and asexual field populations of an endoparasitic wasp, Venturia canescens.

Li D, Zhao Z, Roberts H, Schneider MV, Theopold U, Schmidt O.

Heredity (Edinb). 2003 Apr;90(4):291-7.

39.

Gene flow between arrhenotokous and thelytokous populations of Venturia canescens (Hymenoptera).

Schneider MV, Driessen G, Beukeboom LW, Boll R, van Eunen K, Selzner A, Talsma J, Lapchin L.

Heredity (Edinb). 2003 Mar;90(3):260-7.

40.

Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock.

Seehausen O, Koetsier E, Schneider MV, Chapman LJ, Chapman CA, Knight ME, Turner GF, van Alphen JJ, Bills R.

Proc Biol Sci. 2003 Jan 22;270(1511):129-37. Erratum in: Proc R Soc Lond B Biol Sci. 2003 Dec 22;270(1533):2637-8.

41.

Observation of zero-point noise squeezing via a Josephson-parametric amplifier.

Movshovich R, Yurke B, Kaminsky PG, Smith AD, Silver AH, Simon RW, Schneider MV.

Phys Rev Lett. 1990 Sep 17;65(12):1419-1422. No abstract available.

PMID:
10042261
42.

Microlenses for coupling junction lasers to optical fibers.

Cohen LG, Schneider MV.

Appl Opt. 1974 Jan 1;13(1):89-94. doi: 10.1364/AO.13.000089.

PMID:
20125925

Supplemental Content

Loading ...
Support Center