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Items: 1 to 50 of 93

1.

The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing.

de Francisco Amorim M, Willing EM, Szabo EX, Francisco-Mangilet AG, Droste-Borel I, Maček B, Schneeberger K, Laubinger S.

Plant Cell. 2018 Nov;30(11):2838-2854. doi: 10.1105/tpc.18.00244. Epub 2018 Oct 11.

2.

Bioengineered bile ducts recapitulate key cholangiocyte functions.

Chen C, Jochems PGM, Salz L, Schneeberger K, Penning LC, van de Graaf SFJ, Beuers U, Clevers H, Geijsen N, Masereeuw R, Spee B.

Biofabrication. 2018 Jun 12;10(3):034103. doi: 10.1088/1758-5090/aac8fd.

PMID:
29848792
3.

Intestinal epithelial cell polarity defects in disease: lessons from microvillus inclusion disease.

Schneeberger K, Roth S, Nieuwenhuis EES, Middendorp S.

Dis Model Mech. 2018 Feb 13;11(2). pii: dmm031088. doi: 10.1242/dmm.031088. Review.

4.

findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies.

Sun H, Ding J, Piednoël M, Schneeberger K.

Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637.

PMID:
29444236
5.

Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1.

Ibañez C, Delker C, Martinez C, Bürstenbinder K, Janitza P, Lippmann R, Ludwig W, Sun H, James GV, Klecker M, Grossjohann A, Schneeberger K, Prat S, Quint M.

Curr Biol. 2018 Jan 22;28(2):303-310.e3. doi: 10.1016/j.cub.2017.11.077. Epub 2018 Jan 11.

6.

Intestinal Organoids-Current and Future Applications.

Meneses AMC, Schneeberger K, Kruitwagen HS, Penning LC, van Steenbeek FG, Burgener IA, Spee B.

Vet Sci. 2016 Oct 21;3(4). pii: E31. doi: 10.3390/vetsci3040031. Review.

7.

A Probabilistic Framework for Risk Analysis of Widespread Flood Events: A Proof-of-Concept Study.

Schneeberger K, Huttenlau M, Winter B, Steinberger T, Achleitner S, Stötter J.

Risk Anal. 2019 Jan;39(1):125-139. doi: 10.1111/risa.12863. Epub 2017 Jul 27.

PMID:
28749563
8.

Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and the Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845.

Marti R, Schmid M, Kulli S, Schneeberger K, Naskova J, Knøchel S, Ahrens CH, Hummerjohann J.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00628-17. doi: 10.1128/AEM.00628-17. Print 2017 Aug 1.

9.

Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana.

Zhou Y, Tergemina E, Cui H, Förderer A, Hartwig B, Velikkakam James G, Schneeberger K, Turck F.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):4833-4838. doi: 10.1073/pnas.1620955114. Epub 2017 Apr 20.

10.

Editorial overview: Genome studies and molecular genetics.

Schneeberger K, Henderson I.

Curr Opin Plant Biol. 2017 Apr;36:iv-v. doi: 10.1016/j.pbi.2017.03.017. Epub 2017 Apr 14. No abstract available.

PMID:
28416370
11.

Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana.

Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RAE.

Plant J. 2017 Jul;91(2):251-262. doi: 10.1111/tpj.13560. Epub 2017 May 30.

12.

The impact of third generation genomic technologies on plant genome assembly.

Jiao WB, Schneeberger K.

Curr Opin Plant Biol. 2017 Apr;36:64-70. doi: 10.1016/j.pbi.2017.02.002. Epub 2017 Feb 21. Review.

13.

Converging biofabrication and organoid technologies: the next frontier in hepatic and intestinal tissue engineering?

Schneeberger K, Spee B, Costa P, Sachs N, Clevers H, Malda J.

Biofabrication. 2017 Mar 6;9(1):013001. doi: 10.1088/1758-5090/aa6121. Review.

PMID:
28211365
14.

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data.

Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.

Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.

15.

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana.

Willing EM, Piofczyk T, Albert A, Winkler JB, Schneeberger K, Pecinka A.

Nat Commun. 2016 Dec 1;7:13522. doi: 10.1038/ncomms13522.

16.

A multi-marker association method for genome-wide association studies without the need for population structure correction.

Klasen JR, Barbez E, Meier L, Meinshausen N, Bühlmann P, Koornneef M, Busch W, Schneeberger K.

Nat Commun. 2016 Nov 10;7:13299. doi: 10.1038/ncomms13299.

17.

On the origin and evolutionary consequences of gene body DNA methylation.

Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9111-6. doi: 10.1073/pnas.1604666113. Epub 2016 Jul 25.

18.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

19.

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms.

Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M, Ossowski S, Schneeberger K.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4052-60. doi: 10.1073/pnas.1607532113. Epub 2016 Jun 27.

20.

cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing.

Cartolano M, Huettel B, Hartwig B, Reinhardt R, Schneeberger K.

PLoS One. 2016 Jun 21;11(6):e0157779. doi: 10.1371/journal.pone.0157779. eCollection 2016.

21.

Plant genic methylation: Conserved for 400 million years.

Schneeberger K.

Nat Plants. 2016 Feb 3;2:16003. doi: 10.1038/nplants.2016.3. No abstract available.

PMID:
27249198
22.

Novel approaches: Tissue engineering and stem cells--In vitro modelling of the gut.

van Rijn JM, Schneeberger K, Wiegerinck CL, Nieuwenhuis EE, Middendorp S.

Best Pract Res Clin Gastroenterol. 2016 Apr;30(2):281-93. doi: 10.1016/j.bpg.2016.03.005. Epub 2016 Mar 15. Review.

PMID:
27086891
23.

Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity.

Stuttmann J, Peine N, Garcia AV, Wagner C, Choudhury SR, Wang Y, James GV, Griebel T, Alcázar R, Tsuda K, Schneeberger K, Parker JE.

PLoS Genet. 2016 Apr 15;12(4):e1005990. doi: 10.1371/journal.pgen.1005990. eCollection 2016 Apr.

24.

Correction: Kicking against the PRCs--A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.

Liang SC, Hartwig B, Perera P, Mora-García S, de Leau E, Thornton H, de Lima Alves F, Rappsilber J, Yang S, James GV, Schneeberger K, Finnegan EJ, Turck F, Goodrich J.

PLoS Genet. 2016 Feb 19;12(2):e1005812. doi: 10.1371/journal.pgen.1005812. eCollection 2016 Feb. No abstract available.

25.

Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes.

Zhou Y, Hartwig B, James GV, Schneeberger K, Turck F.

Plant Cell. 2016 Jan;28(1):87-101. doi: 10.1105/tpc.15.00787. Epub 2015 Dec 31.

26.

Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex.

Gutjahr C, Gobbato E, Choi J, Riemann M, Johnston MG, Summers W, Carbonnel S, Mansfield C, Yang SY, Nadal M, Acosta I, Takano M, Jiao WB, Schneeberger K, Kelly KA, Paszkowski U.

Science. 2015 Dec 18;350(6267):1521-4. doi: 10.1126/science.aac9715.

PMID:
26680197
27.

Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.

Liang SC, Hartwig B, Perera P, Mora-García S, de Leau E, Thornton H, de Lima Alves F, Rappsilber J, Yang S, James GV, Schneeberger K, Finnegan EJ, Turck F, Goodrich J.

PLoS Genet. 2015 Dec 7;11(12):e1005660. doi: 10.1371/journal.pgen.1005660. eCollection 2015 Dec. Erratum in: PLoS Genet. 2016 Feb;12(2):e1005812. de Alves, Flavia Lima [corrected to de Lima Alves, Flavia]; Rapsilber, Juri [corrected to Rappsilber, Juri].

28.

Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.

Andrés F, Romera-Branchat M, Martínez-Gallegos R, Patel V, Schneeberger K, Jang S, Altmüller J, Nürnberg P, Coupland G.

Plant Physiol. 2015 Nov;169(3):2187-99. doi: 10.1104/pp.15.00960. Epub 2015 Sep 28.

29.

An inducible mouse model for microvillus inclusion disease reveals a role for myosin Vb in apical and basolateral trafficking.

Schneeberger K, Vogel GF, Teunissen H, van Ommen DD, Begthel H, El Bouazzaoui L, van Vugt AH, Beekman JM, Klumperman J, Müller T, Janecke A, Gerner P, Huber LA, Hess MW, Clevers H, van Es JH, Nieuwenhuis EE, Middendorp S.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):12408-13. doi: 10.1073/pnas.1516672112. Epub 2015 Sep 21.

30.

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K.

PLoS One. 2015 Sep 18;10(9):e0137391. doi: 10.1371/journal.pone.0137391. eCollection 2015.

31.

Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.

Lu X, Dittgen J, Piślewska-Bednarek M, Molina A, Schneider B, Svatoš A, Doubský J, Schneeberger K, Weigel D, Bednarek P, Schulze-Lefert P.

Plant Physiol. 2015 Jul;168(3):814-27. doi: 10.1104/pp.15.00182. Epub 2015 May 28.

32.

Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.

Mateos JL, Madrigal P, Tsuda K, Rawat V, Richter R, Romera-Branchat M, Fornara F, Schneeberger K, Krajewski P, Coupland G.

Genome Biol. 2015 Feb 11;16:31. doi: 10.1186/s13059-015-0597-1.

33.

SHOREmap v3.0: fast and accurate identification of causal mutations from forward genetic screens.

Sun H, Schneeberger K.

Methods Mol Biol. 2015;1284:381-95. doi: 10.1007/978-1-4939-2444-8_19.

PMID:
25757783
34.

Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping.

Rowan BA, Patel V, Weigel D, Schneeberger K.

G3 (Bethesda). 2015 Jan 13;5(3):385-98. doi: 10.1534/g3.114.016501.

35.

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D.

PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan.

36.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K.

Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.

PMID:
27246759
37.

T lymphocytes control microbial composition by regulating the abundance of Vibrio in the zebrafish gut.

Brugman S, Schneeberger K, Witte M, Klein MR, van den Bogert B, Boekhorst J, Timmerman HM, Boes ML, Kleerebezem M, Nieuwenhuis EE.

Gut Microbes. 2014;5(6):737-47. doi: 10.4161/19490976.2014.972228.

38.

The DET1-COP1-HY5 pathway constitutes a multipurpose signaling module regulating plant photomorphogenesis and thermomorphogenesis.

Delker C, Sonntag L, James GV, Janitza P, Ibañez C, Ziermann H, Peterson T, Denk K, Mull S, Ziegler J, Davis SJ, Schneeberger K, Quint M.

Cell Rep. 2014 Dec 24;9(6):1983-9. doi: 10.1016/j.celrep.2014.11.043. Epub 2014 Dec 18.

39.

Mutations in the EDR1 Gene Alter the Response of Arabidopsis thaliana to Phytophthora infestans and the Bacterial PAMPs flg22 and elf18.

Geissler K, Eschen-Lippold L, Naumann K, Schneeberger K, Weigel D, Scheel D, Rosahl S, Westphal L.

Mol Plant Microbe Interact. 2015 Feb;28(2):122-33. doi: 10.1094/MPMI-09-14-0282-R.

40.

Immune profile predicts survival and reflects senescence in a small, long-lived mammal, the greater sac-winged bat (Saccopteryx bilineata).

Schneeberger K, Courtiol A, Czirják GÁ, Voigt CC.

PLoS One. 2014 Sep 25;9(9):e108268. doi: 10.1371/journal.pone.0108268. eCollection 2014.

41.

Rapid identification of a natural knockout allele of ARMADILLO REPEAT-CONTAINING KINESIN1 that causes root hair branching by mapping-by-sequencing.

Rishmawi L, Sun H, Schneeberger K, Hülskamp M, Schrader A.

Plant Physiol. 2014 Nov;166(3):1280-7. doi: 10.1104/pp.114.244046. Epub 2014 Sep 23.

42.

Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability.

Kalhorzadeh P, Hu Z, Cools T, Amiard S, Willing EM, De Winne N, Gevaert K, De Jaeger G, Schneeberger K, White CI, De Veylder L.

Plant Cell. 2014 Sep;26(9):3680-92. doi: 10.1105/tpc.114.128108. Epub 2014 Sep 12.

43.

Using next-generation sequencing to isolate mutant genes from forward genetic screens.

Schneeberger K.

Nat Rev Genet. 2014 Oct;15(10):662-76. doi: 10.1038/nrg3745. Epub 2014 Aug 20. Review.

PMID:
25139187
44.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
45.

CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication.

Dettmer J, Ursache R, Campilho A, Miyashima S, Belevich I, O'Regan S, Mullendore DL, Yadav SR, Lanz C, Beverina L, Papagni A, Schneeberger K, Weigel D, Stierhof YD, Moritz T, Knoblauch M, Jokitalo E, Helariutta Y.

Nat Commun. 2014 Jul 10;5:4276. doi: 10.1038/ncomms5276.

PMID:
25008948
46.

Mapping-by-sequencing identifies HvPHYTOCHROME C as a candidate gene for the early maturity 5 locus modulating the circadian clock and photoperiodic flowering in barley.

Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis SJ, Stein N, Schneeberger K, von Korff M.

Genetics. 2014 Sep;198(1):383-96. doi: 10.1534/genetics.114.165613. Epub 2014 Jul 3.

47.

A shift from magnitude to sign epistasis during adaptive evolution of a bacterial social trait.

Zee PC, Mendes-Soares H, Yu YT, Kraemer SA, Keller H, Ossowski S, Schneeberger K, Velicer GJ.

Evolution. 2014 Sep;68(9):2701-8. doi: 10.1111/evo.12467. Epub 2014 Jul 15.

PMID:
24909926
48.

Loss of syntaxin 3 causes variant microvillus inclusion disease.

Wiegerinck CL, Janecke AR, Schneeberger K, Vogel GF, van Haaften-Visser DY, Escher JC, Adam R, Thöni CE, Pfaller K, Jordan AJ, Weis CA, Nijman IJ, Monroe GR, van Hasselt PM, Cutz E, Klumperman J, Clevers H, Nieuwenhuis EE, Houwen RH, van Haaften G, Hess MW, Huber LA, Stapelbroek JM, Müller T, Middendorp S.

Gastroenterology. 2014 Jul;147(1):65-68.e10. doi: 10.1053/j.gastro.2014.04.002. Epub 2014 Apr 12.

PMID:
24726755
49.

Frugivory is associated with low measures of plasma oxidative stress and high antioxidant concentration in free-ranging bats.

Schneeberger K, Czirják GÁ, Voigt CC.

Naturwissenschaften. 2014 Apr;101(4):285-90. doi: 10.1007/s00114-014-1155-5. Epub 2014 Feb 11.

PMID:
24515336
50.

Adult stem cells in the small intestine are intrinsically programmed with their location-specific function.

Middendorp S, Schneeberger K, Wiegerinck CL, Mokry M, Akkerman RD, van Wijngaarden S, Clevers H, Nieuwenhuis EE.

Stem Cells. 2014 May;32(5):1083-91. doi: 10.1002/stem.1655.

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