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Items: 1 to 50 of 105

1.

Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan.

Shah N, Wakabayashi T, Kawamura Y, Skovbjerg CK, Wang MZ, Mustamin Y, Isomura Y, Gupta V, Jin H, Mun T, Sandal N, Azuma F, Fukai E, Seren Ü, Kusakabe S, Kikuchi Y, Nitanda S, Kumaki T, Hashiguchi M, Tanaka H, Hayashi A, Sønderkær M, Nielsen KL, Schneeberger K, Vilhjalmsson B, Akashi R, Stougaard J, Sato S, Schierup MH, Andersen SU.

Nat Commun. 2020 Jan 14;11(1):253. doi: 10.1038/s41467-019-14213-y.

PMID:
31937774
2.

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes.

Flood PJ, Theeuwen TPJM, Schneeberger K, Keizer P, Kruijer W, Severing E, Kouklas E, Hageman JA, Wijfjes R, Calvo-Baltanas V, Becker FFM, Schnabel SK, Willems LAJ, Ligterink W, van Arkel J, Mumm R, Gualberto JM, Savage L, Kramer DM, Keurentjes JJB, van Eeuwijk F, Koornneef M, Harbinson J, Aarts MGM, Wijnker E.

Nat Plants. 2020 Jan;6(1):13-21. doi: 10.1038/s41477-019-0575-9. Epub 2020 Jan 13.

PMID:
31932677
3.

The Striking Flower-in-Flower Phenotype of Arabidopsis thaliana Nossen (No-0) is Caused by a Novel LEAFY Allele.

Mohrholz A, Sun H, Glöckner N, Hummel S, Kolukisaoglu Ü, Schneeberger K, Harter K.

Plants (Basel). 2019 Dec 13;8(12). pii: E599. doi: 10.3390/plants8120599.

4.

SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.

Goel M, Sun H, Jiao WB, Schneeberger K.

Genome Biol. 2019 Dec 16;20(1):277. doi: 10.1186/s13059-019-1911-0.

5.

Large-scale Production of LGR5-positive Bipotential Human Liver Stem Cells.

Schneeberger K, Sánchez-Romero N, Ye S, van Steenbeek FG, Oosterhoff LA, Pla Palacin I, Chen C, van Wolferen ME, van Tienderen G, Lieshout R, Colemonts-Vroninks H, Schene I, Hoekstra R, Verstegen MMA, van der Laan LJW, Penning LC, Fuchs SA, Clevers H, De Kock J, Baptista PM, Spee B.

Hepatology. 2019 Nov 12. doi: 10.1002/hep.31037. [Epub ahead of print]

PMID:
31715015
6.

Mutations in the miR396 binding site of the growth-regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine.

Rossmann S, Richter R, Sun H, Schneeberger K, Töpfer R, Zyprian E, Theres K.

Plant J. 2019 Oct 30. doi: 10.1111/tpj.14588. [Epub ahead of print]

PMID:
31663642
7.

Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination.

Sun H, Rowan BA, Flood PJ, Brandt R, Fuss J, Hancock AM, Michelmore RW, Huettel B, Schneeberger K.

Nat Commun. 2019 Sep 20;10(1):4310. doi: 10.1038/s41467-019-12209-2.

8.

Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation.

Kiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.

Nat Plants. 2019 Aug;5(8):846-855. doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29.

PMID:
31358959
9.

Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species.

Dittberner H, Becker C, Jiao WB, Schneeberger K, Hölzel N, Tellier A, de Meaux J.

Mol Ecol. 2019 Sep;28(17):3887-3901. doi: 10.1111/mec.15194. Epub 2019 Sep 11.

PMID:
31338892
10.

Hydrogels for Liver Tissue Engineering.

Ye S, Boeter JWB, Penning LC, Spee B, Schneeberger K.

Bioengineering (Basel). 2019 Jul 5;6(3). pii: E59. doi: 10.3390/bioengineering6030059. Review.

11.

Genetic and molecular analysis of trichome development in Arabis alpina.

Chopra D, Mapar M, Stephan L, Albani MC, Deneer A, Coupland G, Willing EM, Schellmann S, Schneeberger K, Fleck C, Schrader A, Hülskamp M.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):12078-12083. doi: 10.1073/pnas.1819440116. Epub 2019 May 23.

12.

Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima.

Gore-Lloyd D, Sumann I, Brachmann AO, Schneeberger K, Ortiz-Merino RA, Moreno-Beltrán M, Schläfli M, Kirner P, Santos Kron A, Rueda-Mejia MP, Somerville V, Wolfe KH, Piel J, Ahrens CH, Henk D, Freimoser FM.

Mol Microbiol. 2019 Jul;112(1):317-332. doi: 10.1111/mmi.14272. Epub 2019 May 20.

13.

The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing.

de Francisco Amorim M, Willing EM, Szabo EX, Francisco-Mangilet AG, Droste-Borel I, Maček B, Schneeberger K, Laubinger S.

Plant Cell. 2018 Nov;30(11):2838-2854. doi: 10.1105/tpc.18.00244. Epub 2018 Oct 11.

14.

Bioengineered bile ducts recapitulate key cholangiocyte functions.

Chen C, Jochems PGM, Salz L, Schneeberger K, Penning LC, van de Graaf SFJ, Beuers U, Clevers H, Geijsen N, Masereeuw R, Spee B.

Biofabrication. 2018 Jun 12;10(3):034103. doi: 10.1088/1758-5090/aac8fd.

PMID:
29848792
15.

Intestinal epithelial cell polarity defects in disease: lessons from microvillus inclusion disease.

Schneeberger K, Roth S, Nieuwenhuis EES, Middendorp S.

Dis Model Mech. 2018 Feb 13;11(2). pii: dmm031088. doi: 10.1242/dmm.031088. Review.

16.

findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies.

Sun H, Ding J, Piednoël M, Schneeberger K.

Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637.

PMID:
29444236
17.

Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1.

Ibañez C, Delker C, Martinez C, Bürstenbinder K, Janitza P, Lippmann R, Ludwig W, Sun H, James GV, Klecker M, Grossjohann A, Schneeberger K, Prat S, Quint M.

Curr Biol. 2018 Jan 22;28(2):303-310.e3. doi: 10.1016/j.cub.2017.11.077. Epub 2018 Jan 11.

18.

Intestinal Organoids-Current and Future Applications.

Meneses AMC, Schneeberger K, Kruitwagen HS, Penning LC, van Steenbeek FG, Burgener IA, Spee B.

Vet Sci. 2016 Oct 21;3(4). pii: E31. doi: 10.3390/vetsci3040031. Review.

19.

A Probabilistic Framework for Risk Analysis of Widespread Flood Events: A Proof-of-Concept Study.

Schneeberger K, Huttenlau M, Winter B, Steinberger T, Achleitner S, Stötter J.

Risk Anal. 2019 Jan;39(1):125-139. doi: 10.1111/risa.12863. Epub 2017 Jul 27.

PMID:
28749563
20.

Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and the Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845.

Marti R, Schmid M, Kulli S, Schneeberger K, Naskova J, Knøchel S, Ahrens CH, Hummerjohann J.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00628-17. doi: 10.1128/AEM.00628-17. Print 2017 Aug 1.

21.

Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana.

Zhou Y, Tergemina E, Cui H, Förderer A, Hartwig B, Velikkakam James G, Schneeberger K, Turck F.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):4833-4838. doi: 10.1073/pnas.1620955114. Epub 2017 Apr 20.

22.

Editorial overview: Genome studies and molecular genetics.

Schneeberger K, Henderson I.

Curr Opin Plant Biol. 2017 Apr;36:iv-v. doi: 10.1016/j.pbi.2017.03.017. Epub 2017 Apr 14. No abstract available.

PMID:
28416370
23.

Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana.

Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RAE.

Plant J. 2017 Jul;91(2):251-262. doi: 10.1111/tpj.13560. Epub 2017 May 30.

24.

The impact of third generation genomic technologies on plant genome assembly.

Jiao WB, Schneeberger K.

Curr Opin Plant Biol. 2017 Apr;36:64-70. doi: 10.1016/j.pbi.2017.02.002. Epub 2017 Feb 21. Review.

25.

Converging biofabrication and organoid technologies: the next frontier in hepatic and intestinal tissue engineering?

Schneeberger K, Spee B, Costa P, Sachs N, Clevers H, Malda J.

Biofabrication. 2017 Mar 6;9(1):013001. doi: 10.1088/1758-5090/aa6121. Review.

PMID:
28211365
26.

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data.

Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.

Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.

27.

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana.

Willing EM, Piofczyk T, Albert A, Winkler JB, Schneeberger K, Pecinka A.

Nat Commun. 2016 Dec 1;7:13522. doi: 10.1038/ncomms13522.

28.

A multi-marker association method for genome-wide association studies without the need for population structure correction.

Klasen JR, Barbez E, Meier L, Meinshausen N, Bühlmann P, Koornneef M, Busch W, Schneeberger K.

Nat Commun. 2016 Nov 10;7:13299. doi: 10.1038/ncomms13299.

29.

On the origin and evolutionary consequences of gene body DNA methylation.

Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9111-6. doi: 10.1073/pnas.1604666113. Epub 2016 Jul 25.

30.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

31.

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms.

Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M, Ossowski S, Schneeberger K.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4052-60. doi: 10.1073/pnas.1607532113. Epub 2016 Jun 27.

32.

cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing.

Cartolano M, Huettel B, Hartwig B, Reinhardt R, Schneeberger K.

PLoS One. 2016 Jun 21;11(6):e0157779. doi: 10.1371/journal.pone.0157779. eCollection 2016.

33.

Plant genic methylation: Conserved for 400 million years.

Schneeberger K.

Nat Plants. 2016 Feb 3;2:16003. doi: 10.1038/nplants.2016.3. No abstract available.

PMID:
27249198
34.

Novel approaches: Tissue engineering and stem cells--In vitro modelling of the gut.

van Rijn JM, Schneeberger K, Wiegerinck CL, Nieuwenhuis EE, Middendorp S.

Best Pract Res Clin Gastroenterol. 2016 Apr;30(2):281-93. doi: 10.1016/j.bpg.2016.03.005. Epub 2016 Mar 15. Review.

PMID:
27086891
35.

Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity.

Stuttmann J, Peine N, Garcia AV, Wagner C, Choudhury SR, Wang Y, James GV, Griebel T, Alcázar R, Tsuda K, Schneeberger K, Parker JE.

PLoS Genet. 2016 Apr 15;12(4):e1005990. doi: 10.1371/journal.pgen.1005990. eCollection 2016 Apr.

36.

Correction: Kicking against the PRCs--A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.

Liang SC, Hartwig B, Perera P, Mora-García S, de Leau E, Thornton H, de Lima Alves F, Rappsilber J, Yang S, James GV, Schneeberger K, Finnegan EJ, Turck F, Goodrich J.

PLoS Genet. 2016 Feb 19;12(2):e1005812. doi: 10.1371/journal.pgen.1005812. eCollection 2016 Feb. No abstract available.

37.

Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes.

Zhou Y, Hartwig B, James GV, Schneeberger K, Turck F.

Plant Cell. 2016 Jan;28(1):87-101. doi: 10.1105/tpc.15.00787. Epub 2015 Dec 31.

38.

Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex.

Gutjahr C, Gobbato E, Choi J, Riemann M, Johnston MG, Summers W, Carbonnel S, Mansfield C, Yang SY, Nadal M, Acosta I, Takano M, Jiao WB, Schneeberger K, Kelly KA, Paszkowski U.

Science. 2015 Dec 18;350(6267):1521-4. doi: 10.1126/science.aac9715.

PMID:
26680197
39.

Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.

Liang SC, Hartwig B, Perera P, Mora-García S, de Leau E, Thornton H, de Lima Alves F, Rappsilber J, Yang S, James GV, Schneeberger K, Finnegan EJ, Turck F, Goodrich J.

PLoS Genet. 2015 Dec 7;11(12):e1005660. doi: 10.1371/journal.pgen.1005660. eCollection 2015 Dec. Erratum in: PLoS Genet. 2016 Feb;12(2):e1005812. de Alves, Flavia Lima [corrected to de Lima Alves, Flavia]; Rapsilber, Juri [corrected to Rappsilber, Juri].

40.

Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.

Andrés F, Romera-Branchat M, Martínez-Gallegos R, Patel V, Schneeberger K, Jang S, Altmüller J, Nürnberg P, Coupland G.

Plant Physiol. 2015 Nov;169(3):2187-99. doi: 10.1104/pp.15.00960. Epub 2015 Sep 28.

41.

An inducible mouse model for microvillus inclusion disease reveals a role for myosin Vb in apical and basolateral trafficking.

Schneeberger K, Vogel GF, Teunissen H, van Ommen DD, Begthel H, El Bouazzaoui L, van Vugt AH, Beekman JM, Klumperman J, Müller T, Janecke A, Gerner P, Huber LA, Hess MW, Clevers H, van Es JH, Nieuwenhuis EE, Middendorp S.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):12408-13. doi: 10.1073/pnas.1516672112. Epub 2015 Sep 21.

42.

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K.

PLoS One. 2015 Sep 18;10(9):e0137391. doi: 10.1371/journal.pone.0137391. eCollection 2015.

43.

Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.

Lu X, Dittgen J, Piślewska-Bednarek M, Molina A, Schneider B, Svatoš A, Doubský J, Schneeberger K, Weigel D, Bednarek P, Schulze-Lefert P.

Plant Physiol. 2015 Jul;168(3):814-27. doi: 10.1104/pp.15.00182. Epub 2015 May 28.

44.

Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.

Mateos JL, Madrigal P, Tsuda K, Rawat V, Richter R, Romera-Branchat M, Fornara F, Schneeberger K, Krajewski P, Coupland G.

Genome Biol. 2015 Feb 11;16:31. doi: 10.1186/s13059-015-0597-1.

45.

SHOREmap v3.0: fast and accurate identification of causal mutations from forward genetic screens.

Sun H, Schneeberger K.

Methods Mol Biol. 2015;1284:381-95. doi: 10.1007/978-1-4939-2444-8_19.

PMID:
25757783
46.

Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping.

Rowan BA, Patel V, Weigel D, Schneeberger K.

G3 (Bethesda). 2015 Jan 13;5(3):385-98. doi: 10.1534/g3.114.016501.

47.

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D.

PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan.

48.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K.

Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.

PMID:
27246759
49.

T lymphocytes control microbial composition by regulating the abundance of Vibrio in the zebrafish gut.

Brugman S, Schneeberger K, Witte M, Klein MR, van den Bogert B, Boekhorst J, Timmerman HM, Boes ML, Kleerebezem M, Nieuwenhuis EE.

Gut Microbes. 2014;5(6):737-47. doi: 10.4161/19490976.2014.972228.

50.

The DET1-COP1-HY5 pathway constitutes a multipurpose signaling module regulating plant photomorphogenesis and thermomorphogenesis.

Delker C, Sonntag L, James GV, Janitza P, Ibañez C, Ziermann H, Peterson T, Denk K, Mull S, Ziegler J, Davis SJ, Schneeberger K, Quint M.

Cell Rep. 2014 Dec 24;9(6):1983-9. doi: 10.1016/j.celrep.2014.11.043. Epub 2014 Dec 18.

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