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Neuronal injury biomarkers for assessment of the individual cognitive reserve in clinically suspected Alzheimer's disease.

Beyer L, Schnabel J, Kazmierczak P, Ewers M, Schönecker S, Prix C, Meyer-Wilmes J, Unterrainer M, Catak C, Pogarell O, Perneczky R, Albert NL, Bartenstein P, Danek A, Buerger K, Levin J, Rominger A, Brendel M.

Neuroimage Clin. 2019 Jul 22;24:101949. doi: 10.1016/j.nicl.2019.101949. [Epub ahead of print]


Fully Automated, Quality-Controlled Cardiac Analysis From CMR: Validation and Large-Scale Application to Characterize Cardiac Function.

Ruijsink B, Puyol-Antón E, Oksuz I, Sinclair M, Bai W, Schnabel JA, Razavi R, King AP.

JACC Cardiovasc Imaging. 2019 Jul 11. pii: S1936-878X(19)30585-6. doi: 10.1016/j.jcmg.2019.05.030. [Epub ahead of print]


Automatic CNN-based detection of cardiac MR motion artefacts using k-space data augmentation and curriculum learning.

Oksuz I, Ruijsink B, Puyol-Antón E, Clough JR, Cruz G, Bustin A, Prieto C, Botnar R, Rueckert D, Schnabel JA, King AP.

Med Image Anal. 2019 Jul;55:136-147. doi: 10.1016/ Epub 2019 Apr 22.


Image-based Artefact Removal in Laser Scanning Microscopy.

Papiez BW, Markelc B, Brown G, Muschel R, Brady SM, Schnabel JA.

IEEE Trans Biomed Eng. 2019 Apr 29. doi: 10.1109/TBME.2019.2908345. [Epub ahead of print]


Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging.

Meng Q, Sinclair M, Zimmer V, Hou B, Rajchl M, Toussaint N, Oktay O, Schlemper J, Gomez A, Housden J, Matthew J, Rueckert D, Schnabel JA, Kainz B.

IEEE Trans Med Imaging. 2019 Apr 25. doi: 10.1109/TMI.2019.2913311. [Epub ahead of print]


Patch-based lung ventilation estimation using multi-layer supervoxels.

Szmul A, Matin T, Gleeson FV, Schnabel JA, Grau V, Papież BW.

Comput Med Imaging Graph. 2019 Jun;74:49-60. doi: 10.1016/j.compmedimag.2019.04.002. Epub 2019 Apr 5.


Virtual interaction and visualisation of 3D medical imaging data with VTK and Unity.

Wheeler G, Deng S, Toussaint N, Pushparajah K, Schnabel JA, Simpson JM, Gomez A.

Healthc Technol Lett. 2018 Sep 21;5(5):148-153. doi: 10.1049/htl.2018.5064. eCollection 2018 Oct.


Viral transmission in honey bees and native bees, supported by a global black queen cell virus phylogeny.

Murray EA, Burand J, Trikoz N, Schnabel J, Grab H, Danforth BN.

Environ Microbiol. 2019 Mar;21(3):972-983. doi: 10.1111/1462-2920.14501. Epub 2019 Jan 17.


Evaluation of 2D and 3D ultrasound tracking algorithms and impact on ultrasound-guided liver radiotherapy margins.

De Luca V, Banerjee J, Hallack A, Kondo S, Makhinya M, Nouri D, Royer L, Cifor A, Dardenne G, Goksel O, Gooding MJ, Klink C, Krupa A, Le Bras A, Marchal M, Moelker A, Niessen WJ, Papiez BW, Rothberg A, Schnabel J, van Walsum T, Harris E, Lediju Bell MA, Tanner C.

Med Phys. 2018 Nov;45(11):4986-5003. doi: 10.1002/mp.13152. Epub 2018 Oct 1.


Regional Multi-View Learning for Cardiac Motion Analysis: Application to Identification of Dilated Cardiomyopathy Patients.

Puyol-Anton E, Ruijsink B, Gerber B, Amzulescu MS, Langet H, De Craene M, Schnabel JA, Piro P, King AP.

IEEE Trans Biomed Eng. 2019 Apr;66(4):956-966. doi: 10.1109/TBME.2018.2865669. Epub 2018 Aug 15.


[Endovascular aneurysm repair (EVAR) : Complication management].

Amin S, Schnabel J, Eldergash O, Chavan A.

Radiologe. 2018 Sep;58(9):841-849. doi: 10.1007/s00117-018-0437-x. Review. German.


Absence of adverse effects following the gavage administration of methyl propyl trisulfide to Sprague-Dawley rats for 90 days.

Bastaki M, Aubanel M, Cachet T, Demyttenaere J, Diop MM, Harman CL, Hayashi SM, Koetzner L, Krammer G, Li X, Llewellyn C, Mendes O, Renskers KJ, Schnabel J, Smith BPC, Taylor SV.

Food Chem Toxicol. 2018 Oct;120:544-551. doi: 10.1016/j.fct.2018.07.056. Epub 2018 Aug 1.


Whole tumor kinetics analysis of 18F-fluoromisonidazole dynamic PET scans of non-small cell lung cancer patients, and correlations with perfusion CT blood flow.

McGowan DR, Skwarski M, Papiez BW, Macpherson RE, Gleeson FV, Schnabel JA, Higgins GS, Fenwick JD.

EJNMMI Res. 2018 Aug 1;8(1):73. doi: 10.1186/s13550-018-0430-4.


Femoral shortening does not impair functional outcome after internal fixation of femoral neck fractures in non-geriatric patients.

Haider T, Schnabel J, Hochpöchler J, Wozasek GE.

Arch Orthop Trauma Surg. 2018 Nov;138(11):1511-1517. doi: 10.1007/s00402-018-3011-0. Epub 2018 Jul 27.


Absence of renal adverse effects from β-myrcene dietary administration in OECD guideline-compliant subchronic toxicity study.

Bastaki M, Aubanel M, Bauter M, Cachet T, Demyttenaere J, Diop MM, Harman CL, Hayashi SM, Krammer G, Li X, Llewellyn C, Mendes O, Renskers KJ, Schnabel J, Smith BPC, Taylor SV.

Food Chem Toxicol. 2018 Oct;120:222-229. doi: 10.1016/j.fct.2018.07.004. Epub 2018 Jul 4.


Clinical Routine FDG-PET Imaging of Suspected Progressive Supranuclear Palsy and Corticobasal Degeneration: A Gatekeeper for Subsequent Tau-PET Imaging?

Beyer L, Meyer-Wilmes J, Schönecker S, Schnabel J, Brendel E, Prix C, Nübling G, Unterrainer M, Albert NL, Pogarell O, Perneczky R, Catak C, Bürger K, Bartenstein P, Bötzel K, Levin J, Rominger A, Brendel M.

Front Neurol. 2018 Jun 20;9:483. doi: 10.3389/fneur.2018.00483. eCollection 2018.


Functional Parameters Derived from Magnetic Resonance Imaging Reflect Vascular Morphology in Preclinical Tumors and in Human Liver Metastases.

Kannan P, Kretzschmar WW, Winter H, Warren D, Bates R, Allen PD, Syed N, Irving B, Papiez BW, Kaeppler J, Markelc B, Kinchesh P, Gilchrist S, Smart S, Schnabel JA, Maughan T, Harris AL, Muschel RJ, Partridge M, Sharma RA, Kersemans V.

Clin Cancer Res. 2018 Oct 1;24(19):4694-4704. doi: 10.1158/1078-0432.CCR-18-0033. Epub 2018 Jun 29.


Absence of adverse effects following administration of piperine in the diet of Sprague-Dawley rats for 90 days.

Bastaki M, Aubanel M, Bauter M, Cachet T, Demyttenaere J, Diop MM, Harman CL, Hayashi SM, Krammer G, Li X, Llewellyn C, Mendes O, Renskers KJ, Schnabel J, Smith BPC, Taylor SV.

Food Chem Toxicol. 2018 Oct;120:213-221. doi: 10.1016/j.fct.2018.06.055. Epub 2018 Jun 26.


Will X-ray Safety Glasses Become Mandatory for Radiological Vascular Interventions?

Thomas RP, Grau M, Eldergash O, Kowald T, Schnabel J, Szczechowicz M, Chavan A.

Cardiovasc Intervent Radiol. 2018 Jul;41(7):1074-1080. doi: 10.1007/s00270-018-1960-x. Epub 2018 Apr 23.


GIFTed Demons: deformable image registration with local structure-preserving regularization using supervoxels for liver applications.

Papież BW, Franklin JM, Heinrich MP, Gleeson FV, Brady M, Schnabel JA.

J Med Imaging (Bellingham). 2018 Apr;5(2):024001. doi: 10.1117/1.JMI.5.2.024001. Epub 2018 Apr 4.


A DCE-MRI Driven 3-D Reaction-Diffusion Model of Solid Tumor Growth.

Roque T, Risser L, Kersemans V, Smart S, Allen D, Kinchesh P, Gilchrist S, Gomes AL, Schnabel JA, Chappell MA.

IEEE Trans Med Imaging. 2018 Mar;37(3):724-732. doi: 10.1109/TMI.2017.2779811.


A chemical genetic approach to engineer phototropin kinases for substrate labeling.

Schnabel J, Hombach P, Waksman T, Giuriani G, Petersen J, Christie JM.

J Biol Chem. 2018 Apr 13;293(15):5613-5623. doi: 10.1074/jbc.RA118.001834. Epub 2018 Feb 23.


Supervoxels for Graph Cuts-Based Deformable Image Registration Using Guided Image Filtering.

Szmul A, Papież BW, Hallack A, Grau V, Schnabel JA.

J Electron Imaging. 2017 Oct 4;26(6). pii: 061607. doi: 10.1117/1.JEI.26.6.061607.


Automated mediastinal lymph node detection from CT volumes based on intensity targeted radial structure tensor analysis.

Oda H, Bhatia KK, Oda M, Kitasaka T, Iwano S, Homma H, Takabatake H, Mori M, Natori H, Schnabel JA, Mori K.

J Med Imaging (Bellingham). 2017 Oct;4(4):044502. doi: 10.1117/1.JMI.4.4.044502. Epub 2017 Nov 9.


Additive value of amyloid-PET in routine cases of clinical dementia work-up after FDG-PET.

Brendel M, Schnabel J, Schönecker S, Wagner L, Brendel E, Meyer-Wilmes J, Unterrainer M, Schildan A, Patt M, Prix C, Ackl N, Catak C, Pogarell O, Levin J, Danek A, Buerger K, Bartenstein P, Barthel H, Sabri O, Rominger A.

Eur J Nucl Med Mol Imaging. 2017 Dec;44(13):2239-2248. doi: 10.1007/s00259-017-3832-z. Epub 2017 Sep 20.


Segmentation of Vasculature From Fluorescently Labeled Endothelial Cells in Multi-Photon Microscopy Images.

Bates R, Irving B, Markelc B, Kaeppler J, Brown G, Muschel RJ, Brady SM, Grau V, Schnabel JA.

IEEE Trans Med Imaging. 2019 Jan;38(1):1-10. doi: 10.1109/TMI.2017.2725639. Epub 2017 Aug 9.


Accessing Colony Boundary Strengthening of Fully Lamellar TiAl Alloys via Micromechanical Modeling.

Schnabel JE, Bargmann S.

Materials (Basel). 2017 Aug 3;10(8). pii: E896. doi: 10.3390/ma10080896.


A level-set approach to joint image segmentation and registration with application to CT lung imaging.

Swierczynski P, Papież BW, Schnabel JA, Macdonald C.

Comput Med Imaging Graph. 2018 Apr;65:58-68. doi: 10.1016/j.compmedimag.2017.06.003. Epub 2017 Jun 15.


Editorial for the special issue of "Computational methods for molecular imaging" for computerized medical imaging and graphics.

Shi K, Gao F, Navab N, Schnabel J, Shi P, Ziegler SI.

Comput Med Imaging Graph. 2017 Sep;60:1-2. doi: 10.1016/j.compmedimag.2017.06.006. Epub 2017 Jul 4. No abstract available.


Sperm whale long-range echolocation sounds revealed by ANTARES, a deep-sea neutrino telescope.

André M, Caballé A, van der Schaar M, Solsona A, Houégnigan L, Zaugg S, Sánchez AM, Castell JV, Solé M, Vila F, Djokic D, Adrián-Martínez S, Albert A, Anghinolfi M, Anton G, Ardid M, Aubert JJ, Avgitas T, Baret B, Barrios-Martí J, Basa S, Bertin V, Biagi S, Bormuth R, Bouwhuis MC, Bruijn R, Brunner J, Busto J, Capone A, Caramete L, Carr J, Celli S, Chiarusi T, Circella M, Coleiro A, Coniglione R, Costantini H, Coyle P, Creusot A, Deschamps A, De Bonis G, Distefano C, Di Palma I, Donzaud C, Dornic D, Drouhin D, Eberl T, El Bojaddaini I, Elsässer D, Enzenhöfer A, Fehn K, Felis I, Fusco LA, Galatà S, Gay P, Geißelsöder S, Geyer K, Giordano V, Gleixner A, Glotin H, Gracia-Ruiz R, Graf K, Hallmann S, van Haren H, Heijboer AJ, Hello Y, Hernandez-Rey JJ, Hößl J, Hofestädt J, Hugon C, Illuminati G, James CW, de Jong M, Jongen M, Kadler M, Kalekin O, Katz U, Kießling D, Kouchner A, Kreter M, Kreykenbohm I, Kulikovskiy V, Lachaud C, Lahmann R, Lefèvre D, Leonora E, Loucatos S, Marcelin M, Margiotta A, Marinelli A, Martínez-Mora JA, Mathieu A, Melis K, Michael T, Migliozzi P, Moussa A, Mueller C, Nezri E, Păvălaş GE, Pellegrino C, Perrina C, Piattelli P, Popa V, Pradier T, Racca C, Riccobene G, Roensch K, Saldaña M, Samtleben DF, Sanguineti M, Sapienza P, Schnabel J, Schüssler F, Seitz T, Sieger C, Spurio M, Stolarczyk T, Sánchez-Losa A, Taiuti M, Trovato A, Tselengidou M, Turpin D, Tönnis C, Vallage B, Vallée C, Van Elewyck V, Vivolo D, Wagner S, Wilms J, Zornoza JD, Zuñiga J.

Sci Rep. 2017 Apr 12;7:45517. doi: 10.1038/srep45517.


A DCE-MRI imaging-based model for simulation of vascular tumour growth.

Roque T, Kersemans V, Smart S, Allen D, Schnabel JA, Chappell M.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:5949-5952. doi: 10.1109/EMBC.2016.7592083.


Regional Differences in End-Diastolic Volumes between 3D Echo and CMR in HLHS Patients.

Gomez A, Oktay O, Rueckert D, Penney GP, Schnabel JA, Simpson JM, Pushparajah K.

Front Pediatr. 2016 Dec 12;4:133. doi: 10.3389/fped.2016.00133. eCollection 2016.


Classification of amyloid status using machine learning with histograms of oriented 3D gradients.

Cattell L, Platsch G, Pfeiffer R, Declerck J, Schnabel JA, Hutton C; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage Clin. 2016 May 10;12:990-1003. eCollection 2016.


Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils.

Pold G, Billings AF, Blanchard JL, Burkhardt DB, Frey SD, Melillo JM, Schnabel J, van Diepen LT, DeAngelis KM.

Appl Environ Microbiol. 2016 Oct 27;82(22):6518-6530. Print 2016 Nov 15.


Comparison of linear and nonlinear implementation of the compartmental tissue uptake model for dynamic contrast-enhanced MRI.

Kallehauge JF, Sourbron S, Irving B, Tanderup K, Schnabel JA, Chappell MA.

Magn Reson Med. 2017 Jun;77(6):2414-2423. doi: 10.1002/mrm.26324. Epub 2016 Sep 8.


Oncological image analysis.

Brady SM, Highnam R, Irving B, Schnabel JA.

Med Image Anal. 2016 Oct;33:7-12. doi: 10.1016/ Epub 2016 Jun 23.


Advances and challenges in deformable image registration: From image fusion to complex motion modelling.

Schnabel JA, Heinrich MP, Papież BW, Brady SJM.

Med Image Anal. 2016 Oct;33:145-148. doi: 10.1016/ Epub 2016 Jun 21.


Pieces-of-parts for supervoxel segmentation with global context: Application to DCE-MRI tumour delineation.

Irving B, Franklin JM, Papież BW, Anderson EM, Sharma RA, Gleeson FV, Brady SM, Schnabel JA.

Med Image Anal. 2016 Aug;32:69-83. doi: 10.1016/ Epub 2016 Mar 21.


Clinical Trial of Oral Nelfinavir before and during Radiation Therapy for Advanced Rectal Cancer.

Hill EJ, Roberts C, Franklin JM, Enescu M, West N, MacGregor TP, Chu KY, Boyle L, Blesing C, Wang LM, Mukherjee S, Anderson EM, Brown G, Dutton S, Love SB, Schnabel JA, Quirke P, Muschel R, McKenna WG, Partridge M, Sharma RA.

Clin Cancer Res. 2016 Apr 15;22(8):1922-31. doi: 10.1158/1078-0432.CCR-15-1489. Epub 2016 Feb 9.


Deformable image registration by combining uncertainty estimates from supervoxel belief propagation.

Heinrich MP, Simpson IJ, Papież BW, Brady SM, Schnabel JA.

Med Image Anal. 2016 Jan;27:57-71. doi: 10.1016/ Epub 2015 Oct 19.


Impact of image-based motion correction on dopamine D3/D2 receptor occupancy-comparison of groupwise and frame-by-frame registration approaches.

Jiao J, Searle GE, Schnabel JA, Gunn RN.

EJNMMI Phys. 2015 Dec;2(1):15. doi: 10.1186/s40658-015-0117-0. Epub 2015 Jul 29.


Probabilistic non-linear registration with spatially adaptive regularisation.

Simpson IJ, Cardoso MJ, Modat M, Cash DM, Woolrich MW, Andersson JL, Schnabel JA, Ourselin S; Alzheimer’s Disease Neuroimaging Initiative.

Med Image Anal. 2015 Dec;26(1):203-16. doi: 10.1016/ Epub 2015 Sep 28.


Improving In Vivo High-Resolution CT Imaging of the Tumour Vasculature in Xenograft Mouse Models through Reduction of Motion and Bone-Streak Artefacts.

Kersemans V, Kannan P, Beech JS, Bates R, Irving B, Gilchrist S, Allen PD, Thompson J, Kinchesh P, Casteleyn C, Schnabel J, Partridge M, Muschel RJ, Smart SC.

PLoS One. 2015 Jun 5;10(6):e0128537. doi: 10.1371/journal.pone.0128537. eCollection 2015.


Effects of Fibrinogen Concentrate on Thrombin Generation, Thromboelastometry Parameters, and Laboratory Coagulation Testing in a 24-Hour Porcine Trauma Model.

Zentai C, Solomon C, van der Meijden PE, Spronk HM, Schnabel J, Rossaint R, Grottke O.

Clin Appl Thromb Hemost. 2016 Nov;22(8):749-759. Epub 2015 May 6.


Assessing and reporting uncertainties in dietary exposure analysis: Mapping of uncertainties in a tiered approach.

Kettler S, Kennedy M, McNamara C, Oberdörfer R, O'Mahony C, Schnabel J, Smith B, Sprong C, Faludi R, Tennant D.

Food Chem Toxicol. 2015 Aug;82:79-95. doi: 10.1016/j.fct.2015.04.007. Epub 2015 Apr 15. Review.


Evaluation of automatic neonatal brain segmentation algorithms: the NeoBrainS12 challenge.

Išgum I, Benders MJ, Avants B, Cardoso MJ, Counsell SJ, Gomez EF, Gui L, Hűppi PS, Kersbergen KJ, Makropoulos A, Melbourne A, Moeskops P, Mol CP, Kuklisova-Murgasova M, Rueckert D, Schnabel JA, Srhoj-Egekher V, Wu J, Wang S, de Vries LS, Viergever MA.

Med Image Anal. 2015 Feb;20(1):135-51. doi: 10.1016/ Epub 2014 Nov 15.


Cancer tracking: Clinician compliance and program outcome.

Layfield LJ, Schnabel JL.

Am J Clin Pathol. 2014 Dec;142(6):773-6. doi: 10.1309/AJCPJHFVORM48IZL.


Automated colorectal tumour segmentation in DCE-MRI using supervoxel neighbourhood contrast characteristics.

Irving B, Cifor A, Papiez BW, Franklin J, Anderson EM, Brady SM, Schnabel JA.

Med Image Comput Comput Assist Interv. 2014;17(Pt 1):609-16.


Multispectral image registration based on local canonical correlation analysis.

Heinrich MP, Papiez BW, Schnabel JA, Handels H.

Med Image Comput Comput Assist Interv. 2014;17(Pt 1):202-9.


Pro-apoptotic function of GABA-related transcripts following stroke.

Jaenisch N, Popp A, Guenther M, Schnabel J, Witte OW, Frahm C.

Neurobiol Dis. 2014 Oct;70:237-44. doi: 10.1016/j.nbd.2014.06.015. Epub 2014 Jun 28.


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