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Items: 1 to 50 of 107

1.

The Acidophilic Methanotroph Methylacidimicrobium tartarophylax 4AC Grows as Autotroph on H2 Under Microoxic Conditions.

Mohammadi SS, Schmitz RA, Pol A, Berben T, Jetten MSM, Op den Camp HJM.

Front Microbiol. 2019 Oct 18;10:2352. doi: 10.3389/fmicb.2019.02352. eCollection 2019.

2.

Arcobacter peruensis sp.nov., a chemolithoheterotroph isolated from sulfide and organic rich coastal waters off Peru.

Callbeck CM, Pelzer C, Lavik G, Ferdelman TG, Graf JS, Vekeman B, Schunck H, Littmann S, Fuchs BM, Hach PF, Kalvelage T, Schmitz RA, Kuypers MMM.

Appl Environ Microbiol. 2019 Oct 4. pii: AEM.01344-19. doi: 10.1128/AEM.01344-19. [Epub ahead of print]

PMID:
31585991
3.

Immediate Effects of Ammonia Shock on Transcription and Composition of a Biogas Reactor Microbiome.

Fischer MA, Ulbricht A, Neulinger SC, Refai S, Waßmann K, Künzel S, Schmitz RA.

Front Microbiol. 2019 Sep 6;10:2064. doi: 10.3389/fmicb.2019.02064. eCollection 2019.

4.

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms.

Rausch P, Rühlemann M, Hermes BM, Doms S, Dagan T, Dierking K, Domin H, Fraune S, von Frieling J, Hentschel U, Heinsen FA, Höppner M, Jahn MT, Jaspers C, Kissoyan KAB, Langfeldt D, Rehman A, Reusch TBH, Roeder T, Schmitz RA, Schulenburg H, Soluch R, Sommer F, Stukenbrock E, Weiland-Bräuer N, Rosenstiel P, Franke A, Bosch T, Baines JF.

Microbiome. 2019 Sep 14;7(1):133. doi: 10.1186/s40168-019-0743-1.

5.

Regulation of the Phytoplankton Heme b Iron Pool During the North Atlantic Spring Bloom.

Louropoulou E, Gledhill M, Browning TJ, Desai DK, Barraqueta JM, Tonnard M, Sarthou G, Planquette H, Bowie AR, Schmitz RA, LaRoche J, Achterberg EP.

Front Microbiol. 2019 Jul 11;10:1566. doi: 10.3389/fmicb.2019.01566. eCollection 2019.

6.

Homologs of aquifex aeolicus protein-only RNase P are not the major RNase P activities in the archaea haloferax volcanii and methanosarcina mazei.

Schwarz TS, Wäber NB, Feyh R, Weidenbach K, Schmitz RA, Marchfelder A, Hartmann RK.

IUBMB Life. 2019 Aug;71(8):1109-1116. doi: 10.1002/iub.2122. Epub 2019 Jul 8.

PMID:
31283101
7.

Neutrality in the Metaorganism.

Sieber M, Pita L, Weiland-Bräuer N, Dirksen P, Wang J, Mortzfeld B, Franzenburg S, Schmitz RA, Baines JF, Fraune S, Hentschel U, Schulenburg H, Bosch TCG, Traulsen A.

PLoS Biol. 2019 Jun 19;17(6):e3000298. doi: 10.1371/journal.pbio.3000298. eCollection 2019 Jun.

8.

Metagenomic quorum quenching enzymes affect biofilm formation of Candida albicans and Staphylococcus epidermidis.

Weiland-Bräuer N, Malek I, Schmitz RA.

PLoS One. 2019 Jan 28;14(1):e0211366. doi: 10.1371/journal.pone.0211366. eCollection 2019.

9.

Potential role of host-derived quorum quenching in modulating bacterial colonization in the moon jellyfish Aurelia aurita.

Weiland-Bräuer N, Fischer MA, Pinnow N, Schmitz RA.

Sci Rep. 2019 Jan 10;9(1):34. doi: 10.1038/s41598-018-37321-z.

10.

Characterization of the lytic archaeal virus Drs3 infecting Methanobacterium formicicum.

Wolf S, Fischer MA, Kupczok A, Reetz J, Kern T, Schmitz RA, Rother M.

Arch Virol. 2019 Mar;164(3):667-674. doi: 10.1007/s00705-018-04120-w. Epub 2018 Dec 6.

PMID:
30523430
11.

Noncoding RNAs in Archaea: Genome-Wide Identification and Functional Classification.

Buddeweg A, Daume M, Randau L, Schmitz RA.

Methods Enzymol. 2018;612:413-442. doi: 10.1016/bs.mie.2018.08.003. Epub 2018 Sep 22.

PMID:
30502951
12.

Crystal Structure of the Apo-Form of NADPH-Dependent Thioredoxin Reductase from a Methane-Producing Archaeon.

Buey RM, Schmitz RA, Buchanan BB, Balsera M.

Antioxidants (Basel). 2018 Nov 17;7(11). pii: E166. doi: 10.3390/antiox7110166.

13.

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis.

Fischer MA, Güllert S, Refai S, Künzel S, Deppenmeier U, Streit WR, Schmitz RA.

Microb Biotechnol. 2019 Mar;12(2):305-323. doi: 10.1111/1751-7915.13313. Epub 2018 Oct 31.

14.

Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1.

Nickel L, Ulbricht A, Alkhnbashi OS, Förstner KU, Cassidy L, Weidenbach K, Backofen R, Schmitz RA.

RNA Biol. 2019 Apr;16(4):492-503. doi: 10.1080/15476286.2018.1514234. Epub 2018 Sep 13.

15.

Small RNAs Involved in Regulation of Nitrogen Metabolism.

Prasse D, Schmitz RA.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.RWR-0018-2018. Review.

PMID:
30027888
16.

Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria.

Callbeck CM, Lavik G, Ferdelman TG, Fuchs B, Gruber-Vodicka HR, Hach PF, Littmann S, Schoffelen NJ, Kalvelage T, Thomsen S, Schunck H, Löscher CR, Schmitz RA, Kuypers MMM.

Nat Commun. 2018 Apr 30;9(1):1729. doi: 10.1038/s41467-018-04041-x.

17.

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

Bang C, Dagan T, Deines P, Dubilier N, Duschl WJ, Fraune S, Hentschel U, Hirt H, Hülter N, Lachnit T, Picazo D, Pita L, Pogoreutz C, Rädecker N, Saad MM, Schmitz RA, Schulenburg H, Voolstra CR, Weiland-Bräuer N, Ziegler M, Bosch TCG.

Zoology (Jena). 2018 Apr;127:1-19. doi: 10.1016/j.zool.2018.02.004. Epub 2018 Feb 15. Review.

18.

sRNA41 affects ribosome binding sites within polycistronic mRNAs in Methanosarcina mazei Gö1.

Buddeweg A, Sharma K, Urlaub H, Schmitz RA.

Mol Microbiol. 2018 Mar;107(5):595-609. doi: 10.1111/mmi.13900. Epub 2018 Jan 18.

19.

The Human-Associated Archaeon Methanosphaera stadtmanae Is Recognized through Its RNA and Induces TLR8-Dependent NLRP3 Inflammasome Activation.

Vierbuchen T, Bang C, Rosigkeit H, Schmitz RA, Heine H.

Front Immunol. 2017 Nov 13;8:1535. doi: 10.3389/fimmu.2017.01535. eCollection 2017.

20.

Immunogenic properties of the human gut-associated archaeon Methanomassiliicoccus luminyensis and its susceptibility to antimicrobial peptides.

Bang C, Vierbuchen T, Gutsmann T, Heine H, Schmitz RA.

PLoS One. 2017 Oct 5;12(10):e0185919. doi: 10.1371/journal.pone.0185919. eCollection 2017.

21.

Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains.

Weidenbach K, Nickel L, Neve H, Alkhnbashi OS, Künzel S, Kupczok A, Bauersachs T, Cassidy L, Tholey A, Backofen R, Schmitz RA.

J Virol. 2017 Oct 27;91(22). pii: e00955-17. doi: 10.1128/JVI.00955-17. Print 2017 Nov 15.

22.

Archaea Are Interactive Components of Complex Microbiomes.

Moissl-Eichinger C, Pausan M, Taffner J, Berg G, Bang C, Schmitz RA.

Trends Microbiol. 2018 Jan;26(1):70-85. doi: 10.1016/j.tim.2017.07.004. Epub 2017 Aug 18. Review.

PMID:
28826642
23.

Polychlorinated Biphenyl (PCB)-Degrading Potential of Microbes Present in a Cryoconite of Jamtalferner Glacier.

Weiland-Bräuer N, Fischer MA, Schramm KW, Schmitz RA.

Front Microbiol. 2017 Jun 15;8:1105. doi: 10.3389/fmicb.2017.01105. eCollection 2017.

24.

sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1.

Prasse D, Förstner KU, Jäger D, Backofen R, Schmitz RA.

RNA Biol. 2017 Nov 2;14(11):1544-1558. doi: 10.1080/15476286.2017.1306170. Epub 2017 Apr 27.

25.

Construction and Screening of Marine Metagenomic Large Insert Libraries.

Weiland-Bräuer N, Langfeldt D, Schmitz RA.

Methods Mol Biol. 2017;1539:23-42.

PMID:
27900682
26.

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle.

Martínez-Pérez C, Mohr W, Löscher CR, Dekaezemacker J, Littmann S, Yilmaz P, Lehnen N, Fuchs BM, Lavik G, Schmitz RA, LaRoche J, Kuypers MM.

Nat Microbiol. 2016 Sep 12;1(11):16163. doi: 10.1038/nmicrobiol.2016.163.

PMID:
27617976
27.

Widespread formation of alternative 3' UTR isoforms via transcription termination in archaea.

Dar D, Prasse D, Schmitz RA, Sorek R.

Nat Microbiol. 2016 Aug 22;1(10):16143. doi: 10.1038/nmicrobiol.2016.143.

PMID:
27670118
28.
29.
30.

Highly Effective Inhibition of Biofilm Formation by the First Metagenome-Derived AI-2 Quenching Enzyme.

Weiland-Bräuer N, Kisch MJ, Pinnow N, Liese A, Schmitz RA.

Front Microbiol. 2016 Jul 13;7:1098. doi: 10.3389/fmicb.2016.01098. eCollection 2016.

31.

Antimicrobial and anti-Quorum Sensing activities of selected medicinal plants of Ethiopia: Implication for development of potent antimicrobial agents.

Bacha K, Tariku Y, Gebreyesus F, Zerihun S, Mohammed A, Weiland-Bräuer N, Schmitz RA, Mulat M.

BMC Microbiol. 2016 Jul 11;16(1):139. doi: 10.1186/s12866-016-0765-9.

32.

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.

Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.

Biotechnol Biofuels. 2016 Jun 7;9:121. doi: 10.1186/s13068-016-0534-x. eCollection 2016.

33.

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels.

Mensch B, Neulinger SC, Graiff A, Pansch A, Künzel S, Fischer MA, Schmitz RA.

Front Microbiol. 2016 Mar 31;7:434. doi: 10.3389/fmicb.2016.00434. eCollection 2016.

34.

Methanosarcina flavescens sp. nov., a methanogenic archaeon isolated from a full-scale anaerobic digester.

Kern T, Fischer MA, Deppenmeier U, Schmitz RA, Rother M.

Int J Syst Evol Microbiol. 2016 Mar;66(3):1533-1538. doi: 10.1099/ijsem.0.000894. Epub 2016 Jan 12.

PMID:
26763977
35.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

Kalvelage T, Lavik G, Jensen MM, Revsbech NP, Löscher C, Schunck H, Desai DK, Hauss H, Kiko R, Holtappels M, LaRoche J, Schmitz RA, Graco MI, Kuypers MM.

PLoS One. 2015 Jul 20;10(7):e0133526. doi: 10.1371/journal.pone.0133526. eCollection 2015.

36.

Dynamic changes of the luminal and mucosa-associated gut microbiota during and after antibiotic therapy with paromomycin.

Heinsen FA, Knecht H, Neulinger SC, Schmitz RA, Knecht C, Kühbacher T, Rosenstiel PC, Schreiber S, Friedrichs AK, Ott SJ.

Gut Microbes. 2015 Jul 4;6(4):243-54. doi: 10.1080/19490976.2015.1062959.

37.

Composition of Bacterial Communities Associated with Aurelia aurita Changes with Compartment, Life Stage, and Population.

Weiland-Bräuer N, Neulinger SC, Pinnow N, Künzel S, Baines JF, Schmitz RA.

Appl Environ Microbiol. 2015 Sep 1;81(17):6038-52. doi: 10.1128/AEM.01601-15. Epub 2015 Jun 26.

38.

Archaea associated with human surfaces: not to be underestimated.

Bang C, Schmitz RA.

FEMS Microbiol Rev. 2015 Sep;39(5):631-48. doi: 10.1093/femsre/fuv010. Epub 2015 Apr 22. Review.

PMID:
25907112
39.

First description of small proteins encoded by spRNAs in Methanosarcina mazei strain Gö1.

Prasse D, Thomsen J, De Santis R, Muntel J, Becher D, Schmitz RA.

Biochimie. 2015 Oct;117:138-48. doi: 10.1016/j.biochi.2015.04.007. Epub 2015 Apr 16.

PMID:
25890157
40.

Novel reporter for identification of interference with acyl homoserine lactone and autoinducer-2 quorum sensing.

Weiland-Bräuer N, Pinnow N, Schmitz RA.

Appl Environ Microbiol. 2015 Feb;81(4):1477-89.

41.

A de novo designed 2[4Fe-4S] ferredoxin mimic mediates electron transfer.

Roy A, Sommer DJ, Schmitz RA, Brown CL, Gust D, Astashkin A, Ghirlanda G.

J Am Chem Soc. 2014 Dec 10;136(49):17343-9. doi: 10.1021/ja510621e. Epub 2014 Dec 1.

PMID:
25437708
42.

Health- and disease-associated species clusters in complex natural biofilms determine the innate immune response in oral epithelial cells during biofilm maturation.

Langfeldt D, Neulinger SC, Stiesch M, Stumpp N, Bang C, Schmitz RA, Eberhard J.

FEMS Microbiol Lett. 2014 Nov;360(2):137-43. doi: 10.1111/1574-6968.12596. Epub 2014 Sep 29.

43.

Biofilm formation of mucosa-associated methanoarchaeal strains.

Bang C, Ehlers C, Orell A, Prasse D, Spinner M, Gorb SN, Albers SV, Schmitz RA.

Front Microbiol. 2014 Jul 8;5:353. doi: 10.3389/fmicb.2014.00353. eCollection 2014.

44.

Synthesis and spectroscopic properties of a soluble semiconducting porphyrin polymer.

Schmitz RA, Liddell PA, Kodis G, Kenney MJ, Brennan BJ, Oster NV, Moore TA, Moore AL, Gust D.

Phys Chem Chem Phys. 2014 Sep 7;16(33):17569-79. doi: 10.1039/c4cp02105c.

PMID:
25025204
45.

The transcriptional activator NrpA is crucial for inducing nitrogen fixation in Methanosarcina mazei Gö1 under nitrogen-limited conditions.

Weidenbach K, Ehlers C, Schmitz RA.

FEBS J. 2014 Aug;281(15):3507-22. doi: 10.1111/febs.12876. Epub 2014 Jul 4.

46.

The intestinal archaea Methanosphaera stadtmanae and Methanobrevibacter smithii activate human dendritic cells.

Bang C, Weidenbach K, Gutsmann T, Heine H, Schmitz RA.

PLoS One. 2014 Jun 10;9(6):e99411. doi: 10.1371/journal.pone.0099411. eCollection 2014.

47.

Facets of diazotrophy in the oxygen minimum zone waters off Peru.

Loescher CR, Großkopf T, Desai FD, Gill D, Schunck H, Croot PL, Schlosser C, Neulinger SC, Pinnow N, Lavik G, Kuypers MM, LaRoche J, Schmitz RA.

ISME J. 2014 Nov;8(11):2180-92. doi: 10.1038/ismej.2014.71. Epub 2014 May 9.

48.

Small regulatory RNAs in Archaea.

Babski J, Maier LK, Heyer R, Jaschinski K, Prasse D, Jäger D, Randau L, Schmitz RA, Marchfelder A, Soppa J.

RNA Biol. 2014;11(5):484-93. Epub 2014 Mar 31. Review.

49.

Effects of β-lactam antibiotics and fluoroquinolones on human gut microbiota in relation to Clostridium difficile associated diarrhea.

Knecht H, Neulinger SC, Heinsen FA, Knecht C, Schilhabel A, Schmitz RA, Zimmermann A, dos Santos VM, Ferrer M, Rosenstiel PC, Schreiber S, Friedrichs AK, Ott SJ.

PLoS One. 2014 Feb 28;9(2):e89417. doi: 10.1371/journal.pone.0089417. eCollection 2014.

50.

Thioredoxin targets fundamental processes in a methane-producing archaeon, Methanocaldococcus jannaschii.

Susanti D, Wong JH, Vensel WH, Loganathan U, DeSantis R, Schmitz RA, Balsera M, Buchanan BB, Mukhopadhyay B.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2608-13. doi: 10.1073/pnas.1324240111. Epub 2014 Feb 6.

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