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Items: 1 to 50 of 51

1.

Biosynthetic Gene Content of the 'Perfume Lichens' Evernia prunastri and Pseudevernia furfuracea.

Calchera A, Dal Grande F, Bode HB, Schmitt I.

Molecules. 2019 Jan 8;24(1). pii: E203. doi: 10.3390/molecules24010203.

2.

Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters.

Singh G, Ptroot A, Ico VJ, Tte J, Pradeep K Divakar, Crespo A, Cáceres MEDS, H Thorsten Lumbsch, Schmitt I.

MycoKeys. 2018 Dec 14;(44):19-50. doi: 10.3897/mycokeys.44.29904. eCollection 2018.

3.

Author Correction: Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens.

Paul F, Otte J, Schmitt I, Grande FD.

Sci Rep. 2018 Nov 16;8(1):17229. doi: 10.1038/s41598-018-35358-8.

4.

Different diversification histories in tropical and temperate lineages in the ascomycete subfamily Protoparmelioideae (Parmeliaceae).

Singh G, Grande FD, Schnitzler J, Pfenninger M, Schmitt I.

MycoKeys. 2018 Jul 2;(36):1-19. doi: 10.3897/mycokeys.36.22548. eCollection 2018.

5.

Antimicrobial-producing Pseudoalteromonas from the marine environment of Panama shows a high phylogenetic diversity and clonal structure.

Atencio LA, Dal Grande F, Young GO, Gavilán R, Guzmán HM, Schmitt I, Mejía LC, Gutiérrez M.

J Basic Microbiol. 2018 Sep;58(9):747-769. doi: 10.1002/jobm.201800087. Epub 2018 Jun 25.

PMID:
29938809
6.

Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens.

Paul F, Otte J, Schmitt I, Dal Grande F.

Sci Rep. 2018 Jun 5;8(1):8624. doi: 10.1038/s41598-018-26947-8. Erratum in: Sci Rep. 2018 Nov 16;8(1):17229.

7.

Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi.

Meiser A, Otte J, Schmitt I, Grande FD.

Sci Rep. 2017 Nov 2;7(1):14881. doi: 10.1038/s41598-017-14576-6.

8.

Environment and host identity structure communities of green algal symbionts in lichens.

Dal Grande F, Rolshausen G, Divakar PK, Crespo A, Otte J, Schleuning M, Schmitt I.

New Phytol. 2018 Jan;217(1):277-289. doi: 10.1111/nph.14770. Epub 2017 Sep 11.

9.

Season-Long Experimental Drought Alters Fungal Community Composition but Not Diversity in a Grassland Soil.

Schmidt PA, Schmitt I, Otte J, Bandow C, Römbke J, Bálint M, Rolshausen G.

Microb Ecol. 2018 Feb;75(2):468-478. doi: 10.1007/s00248-017-1047-2. Epub 2017 Aug 7.

PMID:
28785816
10.

Circumscription of the genus Lepra, a recently resurrected genus to accommodate the "Variolaria"-group of Pertusaria sensu lato (Pertusariales, Ascomycota).

Wei X, Schmitt I, Hodkinson B, Flakus A, Kukwa M, Divakar PK, Kirika PM, Otte J, Meiser A, Lumbsch HT.

PLoS One. 2017 Jul 11;12(7):e0180284. doi: 10.1371/journal.pone.0180284. eCollection 2017.

11.

Adaptive differentiation coincides with local bioclimatic conditions along an elevational cline in populations of a lichen-forming fungus.

Dal Grande F, Sharma R, Meiser A, Rolshausen G, Büdel B, Mishra B, Thines M, Otte J, Pfenninger M, Schmitt I.

BMC Evol Biol. 2017 Mar 31;17(1):93. doi: 10.1186/s12862-017-0929-8.

12.

Panmixia and dispersal from the Mediterranean Basin to Macaronesian Islands of a macrolichen species.

Alors D, Grande FD, Cubas P, Crespo A, Schmitt I, Molina MC, Divakar PK.

Sci Rep. 2017 Jan 19;7:40879. doi: 10.1038/srep40879.

13.

Fungal-algal association patterns in lichen symbiosis linked to macroclimate.

Singh G, Dal Grande F, Divakar PK, Otte J, Crespo A, Schmitt I.

New Phytol. 2017 Apr;214(1):317-329. doi: 10.1111/nph.14366. Epub 2016 Dec 5.

14.

Identification of the Sfp-Type PPTase EppA from the Lichenized Fungus Evernia prunastri.

Schimming O, Schmitt I, Bode HB.

PLoS One. 2016 Jan 19;11(1):e0145624. doi: 10.1371/journal.pone.0145624. eCollection 2016.

15.

Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens.

Greshake B, Zehr S, Dal Grande F, Meiser A, Schmitt I, Ebersberger I.

Mol Ecol Resour. 2016 Mar;16(2):511-23. doi: 10.1111/1755-0998.12463. Epub 2015 Sep 26.

PMID:
26345272
16.

Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi.

Divakar PK, Crespo A, Wedin M, Leavitt SD, Hawksworth DL, Myllys L, McCune B, Randlane T, Bjerke JW, Ohmura Y, Schmitt I, Boluda CG, Alors D, Roca-Valiente B, Del-Prado R, Ruibal C, Buaruang K, Núñez-Zapata J, Amo de Paz G, Rico VJ, Molina MC, Elix JA, Esslinger TL, Tronstad IK, Lindgren H, Ertz D, Gueidan C, Saag L, Mark K, Singh G, Dal Grande F, Parnmen S, Beck A, Benatti MN, Blanchon D, Candan M, Clerc P, Goward T, Grube M, Hodkinson BP, Hur JS, Kantvilas G, Kirika PM, Lendemer J, Mattsson JE, Messuti MI, Miadlikowska J, Nelsen M, Ohlson JI, Pérez-Ortega S, Saag A, Sipman HJ, Sohrabi M, Thell A, Thor G, Truong C, Yahr R, Upreti DK, Cubas P, Lumbsch HT.

New Phytol. 2015 Dec;208(4):1217-26. doi: 10.1111/nph.13553. Epub 2015 Aug 24.

17.

Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota).

Singh G, Dal Grande F, Divakar PK, Otte J, Leavitt SD, Szczepanska K, Crespo A, Rico VJ, Aptroot A, Cáceres ME, Lumbsch HT, Schmitt I.

PLoS One. 2015 May 1;10(5):e0124625. doi: 10.1371/journal.pone.0124625. eCollection 2015.

18.

Characterization of fungus-specific microsatellite markers in the lichen-forming fungus Parmelina carporrhizans (Parmeliaceae).

Alors D, Dal Grande F, Schmitt I, Kraichak E, Lumbsch HT, Crespo A, Divakar PK.

Appl Plant Sci. 2014 Nov 20;2(12). pii: apps.1400081. doi: 10.3732/apps.1400081. eCollection 2014 Dec.

19.

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars.

Bálint M, Bartha L, O'Hara RB, Olson MS, Otte J, Pfenninger M, Robertson AL, Tiffin P, Schmitt I.

Mol Ecol. 2015 Jan;24(1):235-48. doi: 10.1111/mec.13018. Epub 2014 Dec 31.

PMID:
25443313
20.

An Illumina metabarcoding pipeline for fungi.

Bálint M, Schmidt PA, Sharma R, Thines M, Schmitt I.

Ecol Evol. 2014 Jul;4(13):2642-53. doi: 10.1002/ece3.1107. Epub 2014 Jun 2.

21.

Integrating coalescent and phylogenetic approaches to delimit species in the lichen photobiont Trebouxia.

Sadowska-Deś AD, Dal Grande F, Lumbsch HT, Beck A, Otte J, Hur JS, Kim JA, Schmitt I.

Mol Phylogenet Evol. 2014 Jul;76:202-10. doi: 10.1016/j.ympev.2014.03.020. Epub 2014 Mar 28.

PMID:
24685499
22.

Insights into intrathalline genetic diversity of the cosmopolitan lichen symbiotic green alga Trebouxia decolorans Ahmadjian using microsatellite markers.

Dal Grande F, Alors D, Divakar PK, Bálint M, Crespo A, Schmitt I.

Mol Phylogenet Evol. 2014 Mar;72:54-60. doi: 10.1016/j.ympev.2013.12.010. Epub 2014 Jan 8.

PMID:
24412431
23.

The sister-group relationships of the largest family of lichenized fungi, Parmeliaceae (Lecanorales, Ascomycota).

Singh G, Divakar PK, Dal Grande F, Otte J, Parnmen S, Wedin M, Crespo A, Lumbsch HT, Schmitt I.

Fungal Biol. 2013 Oct;117(10):715-21. doi: 10.1016/j.funbio.2013.08.001. Epub 2013 Aug 13.

PMID:
24119410
24.

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns.

Meiser A, Bálint M, Schmitt I.

New Phytol. 2014 Jan;201(2):623-35. doi: 10.1111/nph.12532. Epub 2013 Oct 1.

25.

Microsatellite primers in the lichen symbiotic alga Trebouxia decolorans (Trebouxiophyceae).

Dal Grande F, Beck A, Singh G, Schmitt I.

Appl Plant Sci. 2013 Feb 15;1(3). pii: apps.1200400. doi: 10.3732/apps.1200400. eCollection 2013 Mar.

26.

Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera).

Bálint M, Tiffin P, Hallström B, O'Hara RB, Olson MS, Fankhauser JD, Piepenbring M, Schmitt I.

PLoS One. 2013;8(1):e53987. doi: 10.1371/journal.pone.0053987. Epub 2013 Jan 11.

27.

Genetic basis of self-incompatibility in the lichen-forming fungus Lobaria pulmonaria and skewed frequency distribution of mating-type idiomorphs: implications for conservation.

Singh G, Dal Grande F, Cornejo C, Schmitt I, Scheidegger C.

PLoS One. 2012;7(12):e51402. doi: 10.1371/journal.pone.0051402. Epub 2012 Dec 7.

28.

Triggering the production of the cryptic blue pigment indigoidine from Photorhabdus luminescens.

Brachmann AO, Kirchner F, Kegler C, Kinski SC, Schmitt I, Bode HB.

J Biotechnol. 2012 Jan;157(1):96-9. doi: 10.1016/j.jbiotec.2011.10.002. Epub 2011 Nov 4.

PMID:
22085970
29.

Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation.

Oono R, Schmitt I, Sprent JI, Denison RF.

New Phytol. 2010 Jul;187(2):508-20. doi: 10.1111/j.1469-8137.2010.03261.x. Epub 2010 Apr 28.

30.

Phylogenetic methods in natural product research.

Schmitt I, Barker FK.

Nat Prod Rep. 2009 Dec;26(12):1585-602. doi: 10.1039/b910458p. Epub 2009 Oct 13. Review.

PMID:
19936388
31.

Repeated evolution of closed fruiting bodies is linked to ascoma development in the largest group of lichenized fungi (Lecanoromycetes, Ascomycota).

Schmitt I, Prado RD, Grube M, Lumbsch HT.

Mol Phylogenet Evol. 2009 Jul;52(1):34-44. doi: 10.1016/j.ympev.2009.03.017. Epub 2009 Mar 27.

PMID:
19328858
32.

Global distribution and evolution of a toxinogenic Burkholderia-Rhizopus symbiosis.

Lackner G, Möbius N, Scherlach K, Partida-Martinez LP, Winkler R, Schmitt I, Hertweck C.

Appl Environ Microbiol. 2009 May;75(9):2982-6. doi: 10.1128/AEM.01765-08. Epub 2009 Mar 13.

33.

Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi.

Schmitt I, Lumbsch HT.

PLoS One. 2009;4(2):e4437. doi: 10.1371/journal.pone.0004437. Epub 2009 Feb 12.

34.

Evolution of host resistance in a toxin-producing bacterial-fungal alliance.

Schmitt I, Partida-Martinez LP, Winkler R, Voigt K, Einax E, Dölz F, Telle S, Wöstemeyer J, Hertweck C.

ISME J. 2008 Jun;2(6):632-41. doi: 10.1038/ismej.2008.19. Epub 2008 Feb 28.

PMID:
18309361
35.

Purifying selection is a prevailing motif in the evolution of ketoacyl synthase domains of polyketide synthases from lichenized fungi.

Muggia L, Schmitt I, Grube M.

Mycol Res. 2008 Feb;112(Pt 2):277-88. doi: 10.1016/j.mycres.2007.08.020. Epub 2007 Sep 15.

PMID:
18280127
36.

6-MSAS-like polyketide synthase genes occur in lichenized ascomycetes.

Schmitt I, Kautz S, Lumbsch HT.

Mycol Res. 2008 Feb;112(Pt 2):289-96. doi: 10.1016/j.mycres.2007.08.023. Epub 2007 Sep 29.

PMID:
18280126
37.

Burkholderia rhizoxinica sp. nov. and Burkholderia endofungorum sp. nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus.

Partida-Martinez LP, Groth I, Schmitt I, Richter W, Roth M, Hertweck C.

Int J Syst Evol Microbiol. 2007 Nov;57(Pt 11):2583-90.

PMID:
17978222
38.

Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).

Lumbsch HT, Schmitt I, Mangold A, Wedin M.

Mycol Res. 2007 Sep;111(Pt 9):1133-41. Epub 2007 Jul 5.

PMID:
17976972
39.

A five-gene phylogeny of Pezizomycotina.

Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Büdel B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL.

Mycologia. 2006 Nov-Dec;98(6):1018-28.

PMID:
17486977
40.

The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited.

Lumbsch HT, Schmitt I, Lücking R, Wiklund E, Wedin M.

Mycol Res. 2007 Mar;111(Pt 3):257-67. Epub 2007 Jan 23. Erratum in: Mycol Res. 2007 May;111(Pt 5):508.

PMID:
17363237
41.

Reconstructing the early evolution of Fungi using a six-gene phylogeny.

James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüssler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R.

Nature. 2006 Oct 19;443(7113):818-22.

PMID:
17051209
42.

Molecular data place Trypetheliaceae in Dothideomycetes.

Del Prado R, Schmitt I, Kautz S, Palice Z, Lücking R, Lumbsch HT.

Mycol Res. 2006 May;110(Pt 5):511-20. Epub 2006 Apr 18.

PMID:
16621495
43.

Ascoma morphology is homoplaseous and phylogenetically misleading in some pyrenocarpous lichens.

Schmitt I, Mueller G, Lumbsch HT.

Mycologia. 2005 Mar-Apr;97(2):362-74.

PMID:
16396345
44.

Diversity of non-reducing polyketide synthase genes in the Pertusariales (lichenized Ascomycota): a phylogenetic perspective.

Schmitt I, Martín MP, Kautz S, Lumbsch HT.

Phytochemistry. 2005 Jun;66(11):1241-53.

PMID:
15927215
45.

Molecular data confirm that Omphalina foliacea is a lichen-forming basidiomycete.

Palice Z, Schmitt I, Lumbsch HT.

Mycol Res. 2005 Apr;109(Pt 4):447-51.

PMID:
15912932
46.

Phylogenetic relationships of Lecanoromycetes (Ascomycota) as revealed by analyses of mtSSU and nLSU rDNA sequence data.

Wedin M, Wiklund E, Crewe A, Döring H, Ekman S, Nyberg A, Schmitt I, Lumbsch HT.

Mycol Res. 2005 Feb;109(Pt 2):159-72.

PMID:
15839100
47.

Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta).

Lumbsch HT, Schmitt I, Lindemuth R, Miller A, Mangold A, Fernandez F, Huhndorf S.

Mol Phylogenet Evol. 2005 Mar;34(3):512-24. Epub 2005 Jan 1.

PMID:
15683926
48.

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits.

Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora J, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung GH, Lücking R, Lumbsch T, O'Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim YW, Matheny B, Nishida H, Pfister D, Rogers J, Rossman A, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R.

Am J Bot. 2004 Oct;91(10):1446-80. doi: 10.3732/ajb.91.10.1446.

50.

Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences.

Lumbsch HT, Schmitt I, Palice Z, Wiklund E, Ekman S, Wedin M.

Mol Phylogenet Evol. 2004 Jun;31(3):822-32.

PMID:
15120381

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