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Items: 1 to 50 of 54

1.

Benthic algal (periphyton) growth rates in response to nitrogen and phosphorus: Parameter estimation for water quality models.

Schmidt TS, Konrad CP, Miller JL, Whitlock SD, Stricker CA.

J Am Water Resour Assoc. 2019;55(6):1479-1491. doi: 10.1111/1752-1688.12797.

2.

Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity.

Maistrenko OM, Mende DR, Luetge M, Hildebrand F, Schmidt TSB, Li SS, Rodrigues JFM, von Mering C, Pedro Coelho L, Huerta-Cepas J, Sunagawa S, Bork P.

ISME J. 2020 Feb 11. doi: 10.1038/s41396-020-0600-z. [Epub ahead of print]

PMID:
32047279
3.

Mercury and selenium concentrations in fishes of the Upper Colorado River Basin, southwestern United States: A retrospective assessment.

Day NK, Schmidt TS, Roberts JJ, Osmundson BC, Willacker JJ, Eagles-Smith CA.

PLoS One. 2020 Jan 13;15(1):e0226824. doi: 10.1371/journal.pone.0226824. eCollection 2020.

4.

Bioaccumulation and Toxicity of Cadmium, Copper, Nickel, and Zinc and Their Mixtures to Aquatic Insect Communities.

Mebane CA, Schmidt TS, Miller JL, Balistrieri LS.

Environ Toxicol Chem. 2020 Apr;39(4):812-833. doi: 10.1002/etc.4663.

PMID:
31916284
5.

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.

Mende DR, Letunic I, Maistrenko OM, Schmidt TSB, Milanese A, Paoli L, Hernández-Plaza A, Orakov AN, Forslund SK, Sunagawa S, Zeller G, Huerta-Cepas J, Coelho LP, Bork P.

Nucleic Acids Res. 2020 Jan 8;48(D1):D621-D625. doi: 10.1093/nar/gkz1002.

PMID:
31647096
6.

Bias in energy system models with uniform cost of capital assumption.

Egli F, Steffen B, Schmidt TS.

Nat Commun. 2019 Oct 9;10(1):4588. doi: 10.1038/s41467-019-12468-z. No abstract available.

7.

Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner.

Spalinger MR, Schmidt TS, Schwarzfischer M, Hering L, Atrott K, Lang S, Gottier C, Geirnaert A, Lacroix C, Dai X, Rawlings DJ, Chan AC, von Mering C, Rogler G, Scharl M.

J Clin Invest. 2019 May 20;129(6):2527-2541. doi: 10.1172/JCI123263. eCollection 2019 May 20.

8.

Additional Emissions and Cost from Storing Electricity in Stationary Battery Systems.

Schmidt TS, Beuse M, Zhang X, Steffen B, Schneider SF, Pena-Bello A, Bauer C, Parra D.

Environ Sci Technol. 2019 Apr 2;53(7):3379-3390. doi: 10.1021/acs.est.8b05313. Epub 2019 Mar 20.

PMID:
30848899
9.

Microbial abundance, activity and population genomic profiling with mOTUs2.

Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, Bork P, Zeller G, Sunagawa S.

Nat Commun. 2019 Mar 4;10(1):1014. doi: 10.1038/s41467-019-08844-4.

10.

Extensive transmission of microbes along the gastrointestinal tract.

Schmidt TS, Hayward MR, Coelho LP, Li SS, Costea PI, Voigt AY, Wirbel J, Maistrenko OM, Alves RJ, Bergsten E, de Beaufort C, Sobhani I, Heintz-Buschart A, Sunagawa S, Zeller G, Wilmes P, Bork P.

Elife. 2019 Feb 12;8. pii: e42693. doi: 10.7554/eLife.42693.

11.

Linking the Agricultural Landscape of the Midwest to Stream Health with Structural Equation Modeling.

Schmidt TS, Van Metre PC, Carlisle DM.

Environ Sci Technol. 2019 Jan 2;53(1):452-462. doi: 10.1021/acs.est.8b04381. Epub 2018 Dec 11.

PMID:
30532975
12.

Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites.

Tackmann J, Arora N, Schmidt TSB, Rodrigues JFM, von Mering C.

Microbiome. 2018 Oct 24;6(1):192. doi: 10.1186/s40168-018-0565-6.

13.

A "technology-smart" battery policy strategy for Europe.

Beuse M, Schmidt TS, Wood V.

Science. 2018 Sep 14;361(6407):1075-1077. doi: 10.1126/science.aau2516. Epub 2018 Sep 13. No abstract available.

PMID:
30213903
14.

Understanding the captivity effect on invertebrate communities transplanted into an experimental stream laboratory.

Schmidt TS, Rogers HA, Miller JL, Mebane CA, Balistrieri LS.

Environ Toxicol Chem. 2018 Nov;37(11):2820-2834. doi: 10.1002/etc.4237. Epub 2018 Oct 5.

PMID:
30035388
15.

A Platform for Innovation and Standards Evaluation: a Case Study from the OpenMRS Open-Source Radiology Information System.

Gichoya JW, Kohli M, Ivange L, Schmidt TS, Purkayastha S.

J Digit Imaging. 2018 Jun;31(3):361-370. doi: 10.1007/s10278-018-0088-5. Review.

16.

Similarity of the dog and human gut microbiomes in gene content and response to diet.

Coelho LP, Kultima JR, Costea PI, Fournier C, Pan Y, Czarnecki-Maulden G, Hayward MR, Forslund SK, Schmidt TSB, Descombes P, Jackson JR, Li Q, Bork P.

Microbiome. 2018 Apr 19;6(1):72. doi: 10.1186/s40168-018-0450-3.

17.

Quantifying Differences in Responses of Aquatic Insects to Trace Metal Exposure in Field Studies and Short-Term Stream Mesocosm Experiments.

Iwasaki Y, Schmidt TS, Clements WH.

Environ Sci Technol. 2018 Apr 3;52(7):4378-4384. doi: 10.1021/acs.est.7b06628. Epub 2018 Mar 22.

PMID:
29565570
18.

The Human Gut Microbiome: From Association to Modulation.

Schmidt TSB, Raes J, Bork P.

Cell. 2018 Mar 8;172(6):1198-1215. doi: 10.1016/j.cell.2018.02.044. Review.

19.

Disentangling the effects of low pH and metal mixture toxicity on macroinvertebrate diversity.

Fornaroli R, Ippolito A, Tolkkinen MJ, Mykrä H, Muotka T, Balistrieri LS, Schmidt TS.

Environ Pollut. 2018 Apr;235:889-898. doi: 10.1016/j.envpol.2017.12.097. Epub 2018 Feb 21.

PMID:
29351889
20.

Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression.

Leonardi I, Gerstgrasser A, Schmidt TSB, Nicholls F, Tewes B, Greinwald R, von Mering C, Rogler G, Frey-Wagner I.

Sci Rep. 2017 Nov 28;7(1):16500. doi: 10.1038/s41598-017-16287-4.

21.

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.

Matias Rodrigues JF, Schmidt TSB, Tackmann J, von Mering C.

Bioinformatics. 2017 Dec 1;33(23):3808-3810. doi: 10.1093/bioinformatics/btx517.

22.

Complex mixtures of dissolved pesticides show potential aquatic toxicity in a synoptic study of Midwestern U.S. streams.

Nowell LH, Moran PW, Schmidt TS, Norman JE, Nakagaki N, Shoda ME, Mahler BJ, Van Metre PC, Stone WW, Sandstrom MW, Hladik ML.

Sci Total Environ. 2018 Feb 1;613-614:1469-1488. doi: 10.1016/j.scitotenv.2017.06.156. Epub 2017 Aug 9.

PMID:
28802893
23.

In vivo isotopic fractionation of zinc and biodynamic modeling yield insights into detoxification mechanisms in the mayfly Neocloeon triangulifer.

Wanty RB, Balistrieri LS, Wesner JS, Walters DM, Schmidt TS, Stricker CA, Kraus JM, Wolf RE.

Sci Total Environ. 2017 Dec 31;609:1219-1229. doi: 10.1016/j.scitotenv.2017.07.269. Epub 2017 Aug 4.

PMID:
28787796
24.

Effects of oral antibiotics and isotretinoin on the murine gut microbiota.

Becker E, Schmidt TSB, Bengs S, Poveda L, Opitz L, Atrott K, Stanzel C, Biedermann L, Rehman A, Jonas D, von Mering C, Rogler G, Frey-Wagner I.

Int J Antimicrob Agents. 2017 Sep;50(3):342-351. doi: 10.1016/j.ijantimicag.2017.03.017. Epub 2017 Jul 6.

PMID:
28689869
25.

Thermal regimes of Rocky Mountain lakes warm with climate change.

Roberts JJ, Fausch KD, Schmidt TS, Walters DM.

PLoS One. 2017 Jul 6;12(7):e0179498. doi: 10.1371/journal.pone.0179498. eCollection 2017.

26.

Metamorphosis Affects Metal Concentrations and Isotopic Signatures in a Mayfly (Baetis tricaudatus): Implications for the Aquatic-Terrestrial Transfer of Metals.

Wesner JS, Walters DM, Schmidt TS, Kraus JM, Stricker CA, Clements WH, Wolf RE.

Environ Sci Technol. 2017 Feb 21;51(4):2438-2446. doi: 10.1021/acs.est.6b05471. Epub 2017 Feb 1.

PMID:
28078890
27.

A family of interaction-adjusted indices of community similarity.

Schmidt TS, Matias Rodrigues JF, von Mering C.

ISME J. 2017 Mar;11(3):791-807. doi: 10.1038/ismej.2016.139. Epub 2016 Dec 9.

28.

Bifenthrin Causes Trophic Cascade and Altered Insect Emergence in Mesocosms: Implications for Small Streams.

Rogers HA, Schmidt TS, Dabney BL, Hladik ML, Mahler BJ, Van Metre PC.

Environ Sci Technol. 2016 Nov 1;50(21):11974-11983. Epub 2016 Oct 12.

29.

Larval aquatic insect responses to cadmium and zinc in experimental streams.

Mebane CA, Schmidt TS, Balistrieri LS.

Environ Toxicol Chem. 2017 Mar;36(3):749-762. doi: 10.1002/etc.3599. Epub 2016 Oct 13.

PMID:
27541712
30.

Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data.

Gerosa L, Haverkorn van Rijsewijk BR, Christodoulou D, Kochanowski K, Schmidt TS, Noor E, Sauer U.

Cell Syst. 2015 Oct 28;1(4):270-82. doi: 10.1016/j.cels.2015.09.008. Epub 2015 Oct 22.

31.

Correction to Emergence Flux Declines Disproportionately to Larval Density along a Stream Metal Gradient.

Schmidt TS, Kraus JM, Walters DM, Wanty RB.

Environ Sci Technol. 2015 Nov 3;49(21):13079. doi: 10.1021/acs.est.5b03539. Epub 2015 Oct 21. No abstract available.

PMID:
26488316
32.

Expanding metal mixture toxicity models to natural stream and lake invertebrate communities.

Balistrieri LS, Mebane CA, Schmidt TS, Keller WB.

Environ Toxicol Chem. 2015 Apr;34(4):761-76. doi: 10.1002/etc.2824. Epub 2015 Mar 11.

PMID:
25477294
33.

Limits to robustness and reproducibility in the demarcation of operational taxonomic units.

Schmidt TS, Matias Rodrigues JF, von Mering C.

Environ Microbiol. 2015 May;17(5):1689-706. doi: 10.1111/1462-2920.12610. Epub 2014 Sep 29.

PMID:
25156547
34.

Metamorphosis alters contaminants and chemical tracers in insects: implications for food webs.

Kraus JM, Walters DM, Wesner JS, Stricker CA, Schmidt TS, Zuellig RE.

Environ Sci Technol. 2014 Sep 16;48(18):10957-65. doi: 10.1021/es502970b. Epub 2014 Sep 2.

35.

Metamorphosis enhances the effects of metal exposure on the mayfly, Centroptilum triangulifer.

Wesner JS, Kraus JM, Schmidt TS, Walters DM, Clements WH.

Environ Sci Technol. 2014 Sep 2;48(17):10415-22. doi: 10.1021/es501914y. Epub 2014 Aug 19.

PMID:
25093980
36.

Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale.

Schmidt TS, Matias Rodrigues JF, von Mering C.

PLoS Comput Biol. 2014 Apr 24;10(4):e1003594. doi: 10.1371/journal.pcbi.1003594. eCollection 2014 Apr.

37.

Cross-ecosystem impacts of stream pollution reduce resource and contaminant flux to riparian food webs.

Kraus JM, Schmidt TS, Walters DM, Wanty RB, Zuellig RE, Wolf RE.

Ecol Appl. 2014 Mar;24(2):235-43. Erratum in: Ecol Appl. 2015 Sep;25(6):1748. Ecol Appl. ;26(7):2363.

PMID:
24689137
38.

Quantitation of glucocorticoid receptor DNA-binding dynamics by single-molecule microscopy and FRAP.

Groeneweg FL, van Royen ME, Fenz S, Keizer VI, Geverts B, Prins J, de Kloet ER, Houtsmuller AB, Schmidt TS, Schaaf MJ.

PLoS One. 2014 Mar 14;9(3):e90532. doi: 10.1371/journal.pone.0090532. eCollection 2014.

39.

Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem.

Maier L, Vyas R, Cordova CD, Lindsay H, Schmidt TS, Brugiroux S, Periaswamy B, Bauer R, Sturm A, Schreiber F, von Mering C, Robinson MD, Stecher B, Hardt WD.

Cell Host Microbe. 2013 Dec 11;14(6):641-51. doi: 10.1016/j.chom.2013.11.002.

40.

Emergence flux declines disproportionately to larval density along a stream metals gradient.

Schmidt TS, Kraus JM, Walters DM, Wanty RB.

Environ Sci Technol. 2013 Aug 6;47(15):8784-92. doi: 10.1021/es3051857. Epub 2013 Jul 16. Erratum in: Environ Sci Technol. 2015 Nov 3;49(21):13079.

PMID:
23781899
41.

Grasp detection from human ECoG during natural reach-to-grasp movements.

Pistohl T, Schmidt TS, Ball T, Schulze-Bonhage A, Aertsen A, Mehring C.

PLoS One. 2013;8(1):e54658. doi: 10.1371/journal.pone.0054658. Epub 2013 Jan 24.

42.

Geologic processes influence the effects of mining on aquatic ecosystems.

Schmidt TS, Clements WH, Wanty RB, Verplanck PL, Church SE, San Juan CA, Fey DL, Rockwell BW, DeWitt EH, Klein TL.

Ecol Appl. 2012 Apr;22(3):870-9.

PMID:
22645817
43.

Critical tissue residue approach linking accumulated metals in aquatic insects to population and community-level effects.

Schmidt TS, Clements WH, Zuellig RE, Mitchell KA, Church SE, Wanty RB, San Juan CA, Adams M, Lamothe PJ.

Environ Sci Technol. 2011 Aug 15;45(16):7004-10. doi: 10.1021/es200215s. Epub 2011 Jul 27.

PMID:
21793485
44.

Bi-modal dose-dependent cardiac response to tetrahydrobiopterin in pressure-overload induced hypertrophy and heart failure.

Moens AL, Ketner EA, Takimoto E, Schmidt TS, O'Neill CA, Wolin MS, Alp NJ, Channon KM, Kass DA.

J Mol Cell Cardiol. 2011 Oct;51(4):564-9. doi: 10.1016/j.yjmcc.2011.05.017. Epub 2011 May 30.

45.

Composting projects under the Clean Development Mechanism: sustainable contribution to mitigate climate change.

Rogger C, Beaurain F, Schmidt TS.

Waste Manag. 2011 Jan;31(1):138-46. doi: 10.1016/j.wasman.2010.09.007. Epub 2010 Oct 12.

PMID:
20934318
46.

Development of a new toxic-unit model for the bioassessment of metals in streams.

Schmidt TS, Clements WH, Mitchell KA, Church SE, Wanty RB, Fey DL, Verplanck PL, San Juan CA.

Environ Toxicol Chem. 2010 Nov;29(11):2432-42. doi: 10.1002/etc.302.

PMID:
20853459
47.

Ephrin-B2 controls VEGF-induced angiogenesis and lymphangiogenesis.

Wang Y, Nakayama M, Pitulescu ME, Schmidt TS, Bochenek ML, Sakakibara A, Adams S, Davy A, Deutsch U, Lüthi U, Barberis A, Benjamin LE, Mäkinen T, Nobes CD, Adams RH.

Nature. 2010 May 27;465(7297):483-6. doi: 10.1038/nature09002.

PMID:
20445537
48.

Tetrahydrobiopterin supplementation reduces atherosclerosis and vascular inflammation in apolipoprotein E-knockout mice.

Schmidt TS, McNeill E, Douglas G, Crabtree MJ, Hale AB, Khoo J, O'Neill CA, Cheng A, Channon KM, Alp NJ.

Clin Sci (Lond). 2010 May 6;119(3):131-42. doi: 10.1042/CS20090559.

PMID:
20337596
49.

Single-molecule microscopy reveals membrane microdomain organization of cells in a living vertebrate.

Schaaf MJ, Koopmans WJ, Meckel T, van Noort J, Snaar-Jagalska BE, Schmidt TS, Spaink HP.

Biophys J. 2009 Aug 19;97(4):1206-14. doi: 10.1016/j.bpj.2009.05.044.

50.

Mechanisms for the role of tetrahydrobiopterin in endothelial function and vascular disease.

Schmidt TS, Alp NJ.

Clin Sci (Lond). 2007 Jul;113(2):47-63. Review.

PMID:
17555404

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