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Items: 1 to 50 of 142

1.

Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice.

Smith BJ, Miller RA, Ericsson AC, Harrison DC, Strong R, Schmidt TM.

BMC Microbiol. 2019 Jun 13;19(1):130. doi: 10.1186/s12866-019-1494-7.

2.

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers.

Baxter NT, Schmidt AW, Venkataraman A, Kim KS, Waldron C, Schmidt TM.

MBio. 2019 Jan 29;10(1). pii: e02566-18. doi: 10.1128/mBio.02566-18.

3.

Effects of Atypical Antipsychotic Treatment and Resistant Starch Supplementation on Gut Microbiome Composition in a Cohort of Patients with Bipolar Disorder or Schizophrenia.

Flowers SA, Baxter NT, Ward KM, Kraal AZ, McInnis MG, Schmidt TM, Ellingrod VL.

Pharmacotherapy. 2019 Feb;39(2):161-170. doi: 10.1002/phar.2214. Epub 2019 Feb 3.

PMID:
30620405
4.

Microfluidic Sensors with Impregnated Fluorophores for Simultaneous Imaging of Spatial Structure and Chemical Oxygen Gradients.

Grate JW, Liu B, Kelly RT, Anheier NC, Schmidt TM.

ACS Sens. 2019 Feb 22;4(2):317-325. doi: 10.1021/acssensors.8b00924. Epub 2019 Jan 18.

PMID:
30609370
5.

Light-dependent pathways for dopaminergic amacrine cell development and function.

Munteanu T, Noronha KJ, Leung AC, Pan S, Lucas JA, Schmidt TM.

Elife. 2018 Nov 7;7. pii: e39866. doi: 10.7554/eLife.39866.

6.

Melanopsin Phototransduction Is Repurposed by ipRGC Subtypes to Shape the Function of Distinct Visual Circuits.

Sonoda T, Lee SK, Birnbaumer L, Schmidt TM.

Neuron. 2018 Aug 22;99(4):754-767.e4. doi: 10.1016/j.neuron.2018.06.032. Epub 2018 Jul 12.

PMID:
30017393
7.

Efficacy and Safety of Sorafenib in a Racially Diverse Patient Population with Advanced Hepatocellular Carcinoma.

Schmidt TM, Liu LI, Abraham IE, Uy AB, Dudek AZ.

Anticancer Res. 2018 Jul;38(7):4027-4034. doi: 10.21873/anticanres.12691.

PMID:
29970527
8.

Suppressed topological phase transitions due to nonsymmorphism in SnTe stacking.

Araújo AL, Ferreira GJ, Schmidt TM.

Sci Rep. 2018 Jun 21;8(1):9452. doi: 10.1038/s41598-018-27827-x.

9.

Second Correction for Wertz et al., "Genomic and Physiological Characterization of the Verrucomicrobia Isolate Geminisphaera colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes".

Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM.

Appl Environ Microbiol. 2018 Jun 18;84(13). pii: e00952-18. doi: 10.1128/AEM.00952-18. Print 2018 Jul 1. No abstract available.

10.

Divergent projection patterns of M1 ipRGC subtypes.

Li JY, Schmidt TM.

J Comp Neurol. 2018 Sep 1;526(13):2010-2018. doi: 10.1002/cne.24469. Epub 2018 Aug 2.

PMID:
29888785
11.

Melanopsin Retinal Ganglion Cells Regulate Cone Photoreceptor Lamination in the Mouse Retina.

Tufford AR, Onyak JR, Sondereker KB, Lucas JA, Earley AM, Mattar P, Hattar S, Schmidt TM, Renna JM, Cayouette M.

Cell Rep. 2018 May 22;23(8):2416-2428. doi: 10.1016/j.celrep.2018.04.086.

12.

For the further training of individuals in neurosurgery: a history of the William P. Van Wagenen Fellowship.

Schmidt TM, DeAndrea-Lazarus IA, Kimmell KT, Vates GE, Haines SJ, Pilcher WH.

J Neurosurg. 2018 Apr 1:1-5. doi: 10.3171/2017.10.JNS17999. [Epub ahead of print]

PMID:
29701542
13.

Morphological Identification of Melanopsin-Expressing Retinal Ganglion Cell Subtypes in Mice.

Lee SK, Schmidt TM.

Methods Mol Biol. 2018;1753:275-287. doi: 10.1007/978-1-4939-7720-8_19.

PMID:
29564796
14.

Bacterial Dissemination to the Brain in Sepsis.

Singer BH, Dickson RP, Denstaedt SJ, Newstead MW, Kim K, Falkowski NR, Erb-Downward JR, Schmidt TM, Huffnagle GB, Standiford TJ.

Am J Respir Crit Care Med. 2018 Mar 15;197(6):747-756. doi: 10.1164/rccm.201708-1559OC.

15.

Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium.

Hill DR, Huang S, Nagy MS, Yadagiri VK, Fields C, Mukherjee D, Bons B, Dedhia PH, Chin AM, Tsai YH, Thodla S, Schmidt TM, Walk S, Young VB, Spence JR.

Elife. 2017 Nov 7;6. pii: e29132. doi: 10.7554/eLife.29132.

16.

Postmortem MR diffusion-weighted imaging of the liver: time-behavior of the hepatic apparent diffusion coefficient in the early death interval.

Keller S, Schmidt TM, Kim AC, Fischer R, Heinemann A, Adam G, Yamamura J.

Int J Legal Med. 2018 Jan;132(1):263-268. doi: 10.1007/s00414-017-1685-4. Epub 2017 Sep 14.

PMID:
28905134
17.

Correction for Wertz et al., "Genomic and Physiological Characterization of the Verrucomicrobia Isolate Didymococcus colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes".

Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM.

Appl Environ Microbiol. 2017 Jun 16;83(13). pii: e00987-17. doi: 10.1128/AEM.00987-17. Print 2017 Jul 1. No abstract available. Erratum in: Appl Environ Microbiol. 2018 Jun 18;84(13):.

18.

Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells.

Laboissonniere LA, Sonoda T, Lee SK, Trimarchi JM, Schmidt TM.

J Vis Exp. 2017 May 22;(123). doi: 10.3791/55229.

19.

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens.

Kim YG, Sakamoto K, Seo SU, Pickard JM, Gillilland MG 3rd, Pudlo NA, Hoostal M, Li X, Wang TD, Feehley T, Stefka AT, Schmidt TM, Martens EC, Fukuda S, Inohara N, Nagler CR, Núñez G.

Science. 2017 Apr 21;356(6335):315-319. doi: 10.1126/science.aag2029.

20.

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies.

Roller BR, Stoddard SF, Schmidt TM.

Nat Microbiol. 2016 Sep 12;1(11):16160. doi: 10.1038/nmicrobiol.2016.160.

21.

Corrigendum: Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease.

Mathewson ND, Jenq R, Mathew AV, Koenigsknecht M, Hanash A, Toubai T, Oravecz-Wilson K, Wu SR, Sun Y, Rossi C, Fujiwara H, Byun J, Shono Y, Lindemans C, Calafiore M, Schmidt TM, Honda K, Young VB, Pennathur S, van den Brink M, Reddy P.

Nat Immunol. 2016 Sep 20;17(10):1235. doi: 10.1038/ni1016-1235b. No abstract available.

PMID:
27648549
22.

Re-evaluating the Role of Intrinsically Photosensitive Retinal Ganglion Cells: New Roles in Image-Forming Functions.

Sonoda T, Schmidt TM.

Integr Comp Biol. 2016 Nov;56(5):834-841. Epub 2016 Jul 1. Review.

PMID:
27371393
23.

Variable responses of human microbiomes to dietary supplementation with resistant starch.

Venkataraman A, Sieber JR, Schmidt AW, Waldron C, Theis KR, Schmidt TM.

Microbiome. 2016 Jun 29;4(1):33. doi: 10.1186/s40168-016-0178-x.

24.

Topologically Protected Metallic States Induced by a One-Dimensional Extended Defect in the Bulk of a 2D Topological Insulator.

Lima EN, Schmidt TM, Nunes RW.

Nano Lett. 2016 Jul 13;16(7):4025-31. doi: 10.1021/acs.nanolett.6b00521. Epub 2016 Jun 15.

PMID:
27285964
25.

A new class of large band gap quantum spin hall insulators: 2D fluorinated group-IV binary compounds.

Padilha JE, Pontes RB, Schmidt TM, Miwa RH, Fazzio A.

Sci Rep. 2016 May 23;6:26123. doi: 10.1038/srep26123.

26.

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin.

Loudon AH, Venkataraman A, Van Treuren W, Woodhams DC, Parfrey LW, McKenzie VJ, Knight R, Schmidt TM, Harris RN.

Front Microbiol. 2016 Mar 16;7:333. doi: 10.3389/fmicb.2016.00333. eCollection 2016.

27.

Gut microbiome-derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease.

Mathewson ND, Jenq R, Mathew AV, Koenigsknecht M, Hanash A, Toubai T, Oravecz-Wilson K, Wu SR, Sun Y, Rossi C, Fujiwara H, Byun J, Shono Y, Lindemans C, Calafiore M, Schmidt TM, Honda K, Young VB, Pennathur S, van den Brink M, Reddy P.

Nat Immunol. 2016 May;17(5):505-513. doi: 10.1038/ni.3400. Epub 2016 Mar 21. Erratum in: Nat Immunol. 2016 Sep 20;17 (10 ):1235.

28.

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.

Beck JM, Schloss PD, Venkataraman A, Twigg H 3rd, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, Frank I, Ghedin E, Huang L, Lynch SV, Morris A, Palmer BE, Schmidt TM, Sodergren E, Weinstock GM, Young VB; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2015 Dec 1;192(11):1335-44. doi: 10.1164/rccm.201501-0128OC.

29.

Topological phase transitions of (BixSb1-x)2Se3 alloys by density functional theory.

Abdalla LB, Padilha José E, Schmidt TM, Miwa RH, Fazzio A.

J Phys Condens Matter. 2015 Jul 1;27(25):255501. doi: 10.1088/0953-8984/27/25/255501. Epub 2015 Jun 5.

PMID:
26045478
30.

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation.

Carmody LA, Zhao J, Kalikin LM, LeBar W, Simon RH, Venkataraman A, Schmidt TM, Abdo Z, Schloss PD, LiPuma JJ.

Microbiome. 2015 Apr 1;3:12. doi: 10.1186/s40168-015-0074-9. eCollection 2015.

31.

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals.

Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB.

MBio. 2015 Mar 3;6(2):e00037. doi: 10.1128/mBio.00037-15.

32.

Exploring plasmonic coupling in hole-cap arrays.

Schmidt TM, Frederiksen M, Bochenkov V, Sutherland DS.

Beilstein J Nanotechnol. 2015 Jan 2;6:1-10. doi: 10.3762/bjnano.6.1. eCollection 2015.

33.

Application of a neutral community model to assess structuring of the human lung microbiome.

Venkataraman A, Bassis CM, Beck JM, Young VB, Curtis JL, Huffnagle GB, Schmidt TM.

MBio. 2015 Jan 20;6(1). pii: e02284-14. doi: 10.1128/mBio.02284-14.

34.

The physiology and ecological implications of efficient growth.

Roller BR, Schmidt TM.

ISME J. 2015 Jul;9(7):1481-7. doi: 10.1038/ismej.2014.235. Epub 2015 Jan 9.

35.

OHEP: an oral health education program for mothers of newborns.

Hallas D, Fernandez JB, Lim LJ, Catapano P, Dickson SK, Blouin KR, Schmidt TM, Acal-Jiminez R, Ali N, Figueroa KE, Jiwani NM, Sharma A.

J Pediatr Health Care. 2015 Mar-Apr;29(2):181-90. doi: 10.1016/j.pedhc.2014.11.004. Epub 2014 Dec 26.

PMID:
25547319
36.

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.

Stoddard SF, Smith BJ, Hein R, Roller BR, Schmidt TM.

Nucleic Acids Res. 2015 Jan;43(Database issue):D593-8. doi: 10.1093/nar/gku1201. Epub 2014 Nov 20.

37.

A little O2 may go a long way in structuring the GI microbiome.

Schmidt TM, Kao JY.

Gastroenterology. 2014 Nov;147(5):956-9. doi: 10.1053/j.gastro.2014.09.025. Epub 2014 Sep 27. No abstract available.

38.

Prediction of two-dimensional topological crystalline insulator in PbSe monolayer.

Wrasse EO, Schmidt TM.

Nano Lett. 2014 Oct 8;14(10):5717-20. doi: 10.1021/nl502481f. Epub 2014 Sep 11.

PMID:
25198344
39.

Postmortem 31P magnetic resonance spectroscopy of the skeletal muscle: α-ATP/Pi ratio as a forensic tool?

Schmidt TM, Wang ZJ, Keller S, Heinemann A, Acar S, Graessner J, Schoennagel BP, Adam G, Fischer R, Yamamura J.

Forensic Sci Int. 2014 Sep;242:172-176. doi: 10.1016/j.forsciint.2014.06.009. Epub 2014 Jul 8.

PMID:
25062532
40.

Loss of gq/11 genes does not abolish melanopsin phototransduction.

Chew KS, Schmidt TM, Rupp AC, Kofuji P, Trimarchi JM.

PLoS One. 2014 May 28;9(5):e98356. doi: 10.1371/journal.pone.0098356. eCollection 2014.

41.

A role for melanopsin in alpha retinal ganglion cells and contrast detection.

Schmidt TM, Alam NM, Chen S, Kofuji P, Li W, Prusky GT, Hattar S.

Neuron. 2014 May 21;82(4):781-8. doi: 10.1016/j.neuron.2014.03.022.

42.

Farming for Ecosystem Services: An Ecological Approach to Production Agriculture.

Philip Robertson G, Gross KL, Hamilton SK, Landis DA, Schmidt TM, Snapp SS, Swinton SM.

Bioscience. 2014 May 1;64(5):404-415. Epub 2014 Apr 8.

43.

Size- effect induced high thermoelectric figure of merit in PbSe and PbTe nanowires.

Wrasse EO, Torres A, Baierle RJ, Fazzio A, Schmidt TM.

Phys Chem Chem Phys. 2014 May 7;16(17):8114-8. doi: 10.1039/c3cp55233k.

PMID:
24654001
44.

Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes.

Werling BP, Dickson TL, Isaacs R, Gaines H, Gratton C, Gross KL, Liere H, Malmstrom CM, Meehan TD, Ruan L, Robertson BA, Robertson GP, Schmidt TM, Schrotenboer AC, Teal TK, Wilson JK, Landis DA.

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1652-7. doi: 10.1073/pnas.1309492111. Epub 2014 Jan 13.

45.

Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity.

Blasiak LC, Schmidt AW, Andriamiarinoro H, Mulaw T, Rasolomampianina R, Applequist WL, Birkinshaw C, Rejo-Fienena F, Lowry PP 2nd, Schmidt TM, Hill RT.

PLoS One. 2014 Jan 20;9(1):e85097. doi: 10.1371/journal.pone.0085097. eCollection 2014.

46.

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.

Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, Morrison HG, Eren AM, Meyer F, Schmidt TM, Tiedje JM, Chang EB, Sogin ML.

Microbiome. 2013 Mar 4;1(1):9. doi: 10.1186/2049-2618-1-9.

47.

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community.

Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM.

Microbiome. 2013 Mar 4;1(1):8. doi: 10.1186/2049-2618-1-8.

48.

Symbiotic bacteria appear to mediate hyena social odors.

Theis KR, Venkataraman A, Dycus JA, Koonter KD, Schmitt-Matzen EN, Wagner AP, Holekamp KE, Schmidt TM.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19832-7. doi: 10.1073/pnas.1306477110. Epub 2013 Nov 11.

49.

Carrier-mediated magnetism in transition metal doped Bi₂Se₃ topological insulator.

Schmidt TM, Miwa RH, Fazzio A.

J Phys Condens Matter. 2013 Nov 6;25(44):445003. doi: 10.1088/0953-8984/25/44/445003. Epub 2013 Sep 20.

PMID:
24056032
50.

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium.

Isanapong J, Sealy Hambright W, Willis AG, Boonmee A, Callister SJ, Burnum KE, Paša-Tolić L, Nicora CD, Wertz JT, Schmidt TM, Rodrigues JL.

ISME J. 2013 Sep;7(9):1803-13. doi: 10.1038/ismej.2013.74. Epub 2013 May 9.

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