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Items: 14

1.

Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis.

Darnell CL, Tonner PD, Gulli JG, Schmidler SC, Schmid AK.

mSystems. 2017 Sep 19;2(5). pii: e00032-17. doi: 10.1128/mSystems.00032-17. eCollection 2017 Sep-Oct.

2.

Tree Topology Estimation.

Estrada R, Tomasi C, Schmidler SC, Farsiu S.

IEEE Trans Pattern Anal Mach Intell. 2015 Aug;37(8):1688-701. doi: 10.1109/TPAMI.2014.2382116.

3.

Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure.

Herman JL, Challis CJ, Novák Á, Hein J, Schmidler SC.

Mol Biol Evol. 2014 Sep;31(9):2251-66. doi: 10.1093/molbev/msu184. Epub 2014 Jun 4.

4.

BAYESIAN PROTEIN STRUCTURE ALIGNMENT.

Rodriguez A, Schmidler SC.

Ann Appl Stat. 2014;8(4):2068-2095. Epub 2014 Dec 19.

5.

Ligand concentration regulates the pathways of coupled protein folding and binding.

Daniels KG, Tonthat NK, McClure DR, Chang YC, Liu X, Schumacher MA, Fierke CA, Schmidler SC, Oas TG.

J Am Chem Soc. 2014 Jan 22;136(3):822-5. doi: 10.1021/ja4086726. Epub 2014 Jan 9.

6.

A stochastic evolutionary model for protein structure alignment and phylogeny.

Challis CJ, Schmidler SC.

Mol Biol Evol. 2012 Nov;29(11):3575-87. doi: 10.1093/molbev/mss167. Epub 2012 Jun 21.

7.

BAYESIAN MODEL SEARCH AND MULTILEVEL INFERENCE FOR SNP ASSOCIATION STUDIES.

Wilson MA, Iversen ES, Clyde MA, Schmidler SC, Schildkraut JM.

Ann Appl Stat. 2010 Sep 1;4(3):1342-1364.

8.

Preserving the Boltzmann ensemble in replica-exchange molecular dynamics.

Cooke B, Schmidler SC.

J Chem Phys. 2008 Oct 28;129(16):164112. doi: 10.1063/1.2989802.

PMID:
19045252
9.

Intergenic and genic sequence lengths have opposite relationships with respect to gene expression.

Colinas J, Schmidler SC, Bohrer G, Iordanov B, Benfey PN.

PLoS One. 2008;3(11):e3670. doi: 10.1371/journal.pone.0003670. Epub 2008 Nov 7.

10.

Statistical prediction and molecular dynamics simulation.

Cooke B, Schmidler SC.

Biophys J. 2008 Nov 15;95(10):4497-511. doi: 10.1529/biophysj.108.131623. Epub 2008 Aug 1.

11.

Statistical estimation of statistical mechanical models: helix-coil theory and peptide helicity prediction.

Schmidler SC, Lucas JE, Oas TG.

J Comput Biol. 2007 Dec;14(10):1287-310.

PMID:
18047425
12.

Bayesian segmentation of protein secondary structure.

Schmidler SC, Liu JS, Brutlag DL.

J Comput Biol. 2000 Feb-Apr;7(1-2):233-48.

PMID:
10890399
13.

Regression analysis of multiple protein structures.

Wu TD, Schmidler SC, Hastie T, Brutlag DL.

J Comput Biol. 1998 Fall;5(3):585-95.

PMID:
9773352
14.

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