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Items: 35

1.

The RNA-Binding Protein A1CF Regulates Hepatic Fructose and Glycerol Metabolism via Alternative RNA Splicing.

Nikolaou KC, Vatandaslar H, Meyer C, Schmid MW, Tuschl T, Stoffel M.

Cell Rep. 2019 Oct 8;29(2):283-300.e8. doi: 10.1016/j.celrep.2019.08.100.

2.

Transcriptome analysis of Plasmodium berghei during exo-erythrocytic development.

Caldelari R, Dogga S, Schmid MW, Franke-Fayard B, Janse CJ, Soldati-Favre D, Heussler V.

Malar J. 2019 Sep 24;18(1):330. doi: 10.1186/s12936-019-2968-7.

3.

Evidence for rapid evolution in a grassland biodiversity experiment.

van Moorsel SJ, Schmid MW, Wagemaker NCAM, van Gurp T, Schmid B, Vergeer P.

Mol Ecol. 2019 Sep;28(17):4097-4117. doi: 10.1111/mec.15191. Epub 2019 Sep 2.

PMID:
31336411
4.

Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34.

Krattinger SG, Kang J, Bräunlich S, Boni R, Chauhan H, Selter LL, Robinson MD, Schmid MW, Wiederhold E, Hensel G, Kumlehn J, Sucher J, Martinoia E, Keller B.

New Phytol. 2019 Jul;223(2):853-866. doi: 10.1111/nph.15815. Epub 2019 Apr 22.

5.

Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment.

Schmid MW, Hahl T, van Moorsel SJ, Wagg C, De Deyn GB, Schmid B.

Mol Ecol. 2019 Feb;28(4):863-878. doi: 10.1111/mec.14987.

PMID:
30575197
6.

Contribution of epigenetic variation to adaptation in Arabidopsis.

Schmid MW, Heichinger C, Coman Schmid D, Guthörl D, Gagliardini V, Bruggmann R, Aluri S, Aquino C, Schmid B, Turnbull LA, Grossniklaus U.

Nat Commun. 2018 Oct 25;9(1):4446. doi: 10.1038/s41467-018-06932-5.

7.

RNA-Seq analysis during the life cycle of Cryptosporidium parvum reveals significant differential gene expression between proliferating stages in the intestine and infectious sporozoites.

Lippuner C, Ramakrishnan C, Basso WU, Schmid MW, Okoniewski M, Smith NC, Hässig M, Deplazes P, Hehl AB.

Int J Parasitol. 2018 May;48(6):413-422. doi: 10.1016/j.ijpara.2017.10.007. Epub 2018 Feb 9.

PMID:
29432770
8.

Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha.

Schmid MW, Giraldo-Fonseca A, Rövekamp M, Smetanin D, Bowman JL, Grossniklaus U.

Genome Biol. 2018 Jan 25;19(1):9. doi: 10.1186/s13059-017-1383-z.

9.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

10.

RNA-Seq Data Analysis Protocol: Combining In-House and Publicly Available Data.

Schmid MW.

Methods Mol Biol. 2017;1669:309-335. doi: 10.1007/978-1-4939-7286-9_24.

PMID:
28936668
11.

Corrigendum: Pramel7 mediates ground-state pluripotency through proteasomal-epigenetic combined pathways.

Graf U, Casanova EA, Wyck S, Dalcher D, Gatti M, Vollenweider E, Okoniewski MJ, Weber FA, Patel SS, Schmid MW, Li J, Sharif J, Wanner GA, Koseki H, Wong J, Pelczar P, Penengo L, Santoro R, Cinelli P.

Nat Cell Biol. 2017 Jul 28;19(8):1003. doi: 10.1038/ncb3572.

PMID:
28752849
12.

Pramel7 mediates ground-state pluripotency through proteasomal-epigenetic combined pathways.

Graf U, Casanova EA, Wyck S, Dalcher D, Gatti M, Vollenweider E, Okoniewski MJ, Weber FA, Patel SS, Schmid MW, Li J, Sharif J, Wanner GA, Koseki H, Wong J, Pelczar P, Penengo L, Santoro R, Cinelli P.

Nat Cell Biol. 2017 Jul;19(7):763-773. doi: 10.1038/ncb3554. Epub 2017 Jun 12. Erratum in: Nat Cell Biol. 2017 Jul 28;19(8):1003.

PMID:
28604677
13.

Starch Turnover and Metabolism during Flower and Early Embryo Development.

Hedhly A, Vogler H, Schmid MW, Pazmino D, Gagliardini V, Santelia D, Grossniklaus U.

Plant Physiol. 2016 Dec;172(4):2388-2402. Epub 2016 Oct 28.

14.

Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes.

Gossmann TI, Saleh D, Schmid MW, Spence MA, Schmid KJ.

Mol Biol Evol. 2016 Jul;33(7):1669-78. doi: 10.1093/molbev/msw044. Epub 2016 Mar 8.

15.

The female gametophyte: an emerging model for cell type-specific systems biology in plant development.

Schmid MW, Schmidt A, Grossniklaus U.

Front Plant Sci. 2015 Nov 3;6:907. doi: 10.3389/fpls.2015.00907. eCollection 2015. Review.

16.

HiCdat: a fast and easy-to-use Hi-C data analysis tool.

Schmid MW, Grob S, Grossniklaus U.

BMC Bioinformatics. 2015 Sep 3;16:277. doi: 10.1186/s12859-015-0678-x.

17.

Plant germline formation: common concepts and developmental flexibility in sexual and asexual reproduction.

Schmidt A, Schmid MW, Grossniklaus U.

Development. 2015 Jan 15;142(2):229-41. doi: 10.1242/dev.102103. Review.

18.

Rcount: simple and flexible RNA-Seq read counting.

Schmid MW, Grossniklaus U.

Bioinformatics. 2015 Feb 1;31(3):436-7. doi: 10.1093/bioinformatics/btu680. Epub 2014 Oct 15.

19.

Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

Grob S, Schmid MW, Grossniklaus U.

Mol Cell. 2014 Sep 4;55(5):678-93. doi: 10.1016/j.molcel.2014.07.009. Epub 2014 Aug 14.

20.

Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation.

Schmidt A, Schmid MW, Klostermeier UC, Qi W, Guthörl D, Sailer C, Waller M, Rosenstiel P, Grossniklaus U.

PLoS Genet. 2014 Jul 10;10(7):e1004476. doi: 10.1371/journal.pgen.1004476. eCollection 2014 Jul.

21.

Selection-driven evolution of sex-biased genes is consistent with sexual selection in Arabidopsis thaliana.

Gossmann TI, Schmid MW, Grossniklaus U, Schmid KJ.

Mol Biol Evol. 2014 Mar;31(3):574-83. doi: 10.1093/molbev/mst226. Epub 2013 Nov 21.

PMID:
24273323
22.

Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture.

Grob S, Schmid MW, Luedtke NW, Wicker T, Grossniklaus U.

Genome Biol. 2013 Nov 24;14(11):R129. doi: 10.1186/gb-2013-14-11-r129.

23.

Cell-specific expression profiling of rare cell types as exemplified by its impact on our understanding of female gametophyte development.

Wuest SE, Schmid MW, Grossniklaus U.

Curr Opin Plant Biol. 2013 Feb;16(1):41-9. doi: 10.1016/j.pbi.2012.12.001. Epub 2012 Dec 29. Review.

24.

Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana.

You W, Tyczewska A, Spencer M, Daxinger L, Schmid MW, Grossniklaus U, Simon SA, Meyers BC, Matzke AJ, Matzke M.

BMC Plant Biol. 2012 Apr 19;12:51. doi: 10.1186/1471-2229-12-51.

25.

Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights.

Schmidt A, Schmid MW, Grossniklaus U.

Plant J. 2012 Apr;70(1):18-29. doi: 10.1111/j.1365-313X.2012.04897.x. Review.

26.

A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing.

Schmid MW, Schmidt A, Klostermeier UC, Barann M, Rosenstiel P, Grossniklaus U.

PLoS One. 2012;7(1):e29685. doi: 10.1371/journal.pone.0029685. Epub 2012 Jan 26.

27.

Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds.

McKeown PC, Laouielle-Duprat S, Prins P, Wolff P, Schmid MW, Donoghue MT, Fort A, Duszynska D, Comte A, Lao NT, Wennblom TJ, Smant G, Köhler C, Grossniklaus U, Spillane C.

BMC Plant Biol. 2011 Aug 12;11:113. doi: 10.1186/1471-2229-11-113.

28.

Listeria seeligeri isolates from food processing environments form two phylogenetic lineages.

Müller AA, Schmid MW, Meyer O, Meussdoerffer FG.

Appl Environ Microbiol. 2010 May;76(9):3044-7. doi: 10.1128/AEM.02243-09. Epub 2010 Mar 12.

29.

Development and application of oligonucleotide probes for in situ detection of thermotolerant Campylobacter in chicken faecal and liver samples.

Schmid MW, Lehner A, Stephan R, Schleifer KH, Meier H.

Int J Food Microbiol. 2005 Nov 25;105(2):245-55. Epub 2005 Aug 2.

PMID:
16061298
30.

Evolutionary history of the genus Listeria and its virulence genes.

Schmid MW, Ng EY, Lampidis R, Emmerth M, Walcher M, Kreft J, Goebel W, Wagner M, Schleifer KH.

Syst Appl Microbiol. 2005 Jan;28(1):1-18.

PMID:
15709360
31.

Identifying at risk nursing home residents using a polydipsia screening tool.

Reynolds SA, Schmid MW, Broome ME, Hewitt JB.

Arch Psychiatr Nurs. 2004 Apr;18(2):60-7.

PMID:
15106136
32.

Polydipsia screening tool.

Reynolds SA, Schmid MW, Broome ME.

Arch Psychiatr Nurs. 2004 Apr;18(2):49-59.

PMID:
15106135
33.

Risks and complications of peripherally and centrally inserted intravenous catheters.

Schmid MW.

Crit Care Nurs Clin North Am. 2000 Jun;12(2):165-74. Review.

PMID:
11249361
34.

Assistive algorithms for exposure management--Part II: Mycobacterium tuberculosis, meningococcemia, and measles.

Barr BM, Adams JR, Schmid MW, Rasley DA, Yank TJ, Streed SA.

Clin Perform Qual Health Care. 1994 Jan-Mar;2(1):33-6. No abstract available.

PMID:
10135441
35.

Assistive algorithms for exposure management: Part I: Chickenpox, scabies, and lice.

Schmid MW, Barr BM, Adams JR, Rasley DA, Yank TJ, Streed SA.

Clin Perform Qual Health Care. 1993 Jul-Sep;1(3):152-4. No abstract available.

PMID:
10184150

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