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Items: 1 to 50 of 76

1.

Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen.

Hwang S, Chavarria NE, Hackley RK, Schmid AK, Maupin-Furlow JA.

Int J Mol Sci. 2019 Sep 26;20(19). pii: E4784. doi: 10.3390/ijms20194784.

2.

Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response.

Hackley RK, Schmid AK.

J Mol Biol. 2019 Aug 19. pii: S0022-2836(19)30477-2. doi: 10.1016/j.jmb.2019.07.029. [Epub ahead of print] Review.

PMID:
31437442
3.

N-Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility.

Zaretsky M, Darnell CL, Schmid AK, Eichler J.

Front Microbiol. 2019 Jun 18;10:1367. doi: 10.3389/fmicb.2019.01367. eCollection 2019.

4.

Observing crystal nucleation in four dimensions using atomic electron tomography.

Zhou J, Yang Y, Yang Y, Kim DS, Yuan A, Tian X, Ophus C, Sun F, Schmid AK, Nathanson M, Heinz H, An Q, Zeng H, Ercius P, Miao J.

Nature. 2019 Jun;570(7762):500-503. doi: 10.1038/s41586-019-1317-x. Epub 2019 Jun 26.

PMID:
31243385
5.

Observation of surface step bunch induced perpendicular magnetic anisotropy using spin-polarized low energy electron microscopy.

Robertson M, Wu Y, Schmid AK, Chen G.

Ultramicroscopy. 2019 May;200:180-183. doi: 10.1016/j.ultramic.2019.02.025. Epub 2019 Feb 27.

PMID:
30959319
6.

Magnetic domain wall contrast under zero domain contrast conditions in spin polarized low energy electron microscopy.

Zhou C, Chen G, Xu J, Liang J, Liu K, Schmid AK, Wu Y.

Ultramicroscopy. 2019 May;200:132-138. doi: 10.1016/j.ultramic.2019.02.026. Epub 2019 Mar 1.

PMID:
30913476
7.

Synergistic Impacts of Organic Acids and pH on Growth of Pseudomonas aeruginosa: A Comparison of Parametric and Bayesian Non-parametric Methods to Model Growth.

Bushell FML, Tonner PD, Jabbari S, Schmid AK, Lund PA.

Front Microbiol. 2019 Jan 8;9:3196. doi: 10.3389/fmicb.2018.03196. eCollection 2018.

8.

Copy number variation is associated with gene expression change in archaea.

Dulmage KA, Darnell CL, Vreugdenhil A, Schmid AK.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000210. Epub 2018 Aug 24.

9.

Patterning-Induced Ferromagnetism of Fe3GeTe2 van der Waals Materials beyond Room Temperature.

Li Q, Yang M, Gong C, Chopdekar RV, N'Diaye AT, Turner J, Chen G, Scholl A, Shafer P, Arenholz E, Schmid AK, Wang S, Liu K, Gao N, Admasu AS, Cheong SW, Hwang C, Li J, Wang F, Zhang X, Qiu Z.

Nano Lett. 2018 Sep 12;18(9):5974-5980. doi: 10.1021/acs.nanolett.8b02806. Epub 2018 Aug 21.

PMID:
30114354
10.

GlpR Is a Direct Transcriptional Repressor of Fructose Metabolic Genes in Haloferax volcanii.

Martin JH, Sherwood Rawls K, Chan JC, Hwang S, Martinez-Pastor M, McMillan LJ, Prunetti L, Schmid AK, Maupin-Furlow JA.

J Bacteriol. 2018 Aug 10;200(17). pii: e00244-18. doi: 10.1128/JB.00244-18. Print 2018 Sep 1.

11.

Significant Dzyaloshinskii-Moriya interaction at graphene-ferromagnet interfaces due to the Rashba effect.

Yang H, Chen G, Cotta AAC, N'Diaye AT, Nikolaev SA, Soares EA, Macedo WAA, Liu K, Schmid AK, Fert A, Chshiev M.

Nat Mater. 2018 Jul;17(7):605-609. doi: 10.1038/s41563-018-0079-4. Epub 2018 May 28.

PMID:
29807987
12.

Memory effect and magnetocrystalline anisotropy impact on the surface magnetic domains of magnetite(001).

Martín-García L, Chen G, Montaña Y, Mascaraque A, Pabón BM, Schmid AK, de la Figuera J.

Sci Rep. 2018 Apr 16;8(1):5991. doi: 10.1038/s41598-018-24160-1.

13.

Corrigendum to Work Function Characterization of the Directionally Solidified LaB6--VB2 Eutectic [Ultramicroscopy 183 (2017) 67-71].

Back TC, Schmid AK, Fairchild SB, Boeckl JJ, Cahay M, Derkink F, Gong C, Sayir A.

Ultramicroscopy. 2018 May;188:102. doi: 10.1016/j.ultramic.2018.03.027. No abstract available.

PMID:
29655417
14.

Clustering gene expression time series data using an infinite Gaussian process mixture model.

McDowell IC, Manandhar D, Vockley CM, Schmid AK, Reddy TE, Engelhardt BE.

PLoS Comput Biol. 2018 Jan 16;14(1):e1005896. doi: 10.1371/journal.pcbi.1005896. eCollection 2018 Jan.

15.

Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks.

Martinez-Pastor M, Tonner PD, Darnell CL, Schmid AK.

Annu Rev Genet. 2017 Nov 27;51:143-170. doi: 10.1146/annurev-genet-120116-023413. Review.

PMID:
29178818
16.

A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Martinez-Pastor M, Lancaster WA, Tonner PD, Adams MWW, Schmid AK.

Nucleic Acids Res. 2017 Sep 29;45(17):9990-10001. doi: 10.1093/nar/gkx662.

17.

Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis.

Darnell CL, Tonner PD, Gulli JG, Schmidler SC, Schmid AK.

mSystems. 2017 Sep 19;2(5). pii: e00032-17. doi: 10.1128/mSystems.00032-17. eCollection 2017 Sep-Oct.

18.

Out-of-plane chiral domain wall spin-structures in ultrathin in-plane magnets.

Chen G, Kang SP, Ophus C, N'Diaye AT, Kwon HY, Qiu RT, Won C, Liu K, Wu Y, Schmid AK.

Nat Commun. 2017 May 19;8:15302. doi: 10.1038/ncomms15302.

19.

Work function characterization of directionally solidified LaB6-VB2 eutectic.

Back TC, Schmid AK, Fairchild SB, Boeckl JJ, Cahay M, Derkink F, Chen G, Sayir A.

Ultramicroscopy. 2017 Dec;183:67-71. doi: 10.1016/j.ultramic.2017.05.006. Epub 2017 May 10. Erratum in: Ultramicroscopy. 2018 May;188:102.

PMID:
28522243
20.

Work function mapping of MoOx thin-films for application in electronic devices.

Cauduro ALF, Dos Reis R, Chen G, Schmid AK, Rubahn HG, Madsen M.

Ultramicroscopy. 2017 Dec;183:99-103. doi: 10.1016/j.ultramic.2017.03.025. Epub 2017 Mar 23.

PMID:
28396081
21.

Crystalline Molybdenum Oxide Thin-Films for Application as Interfacial Layers in Optoelectronic Devices.

F Cauduro AL, Dos Reis R, Chen G, Schmid AK, Méthivier C, Rubahn HG, Bossard-Giannesini L, Cruguel H, Witkowski N, Madsen M.

ACS Appl Mater Interfaces. 2017 Mar 1;9(8):7717-7724. doi: 10.1021/acsami.6b14228. Epub 2017 Feb 13.

PMID:
28165215
22.

Detecting differential growth of microbial populations with Gaussian process regression.

Tonner PD, Darnell CL, Engelhardt BE, Schmid AK.

Genome Res. 2017 Feb;27(2):320-333. doi: 10.1101/gr.210286.116. Epub 2016 Nov 18.

23.

Nucleotide-Specific Contrast for DNA Sequencing by Electron Spectroscopy.

Mankos M, Persson HH, N'Diaye AT, Shadman K, Schmid AK, Davis RW.

PLoS One. 2016 May 5;11(5):e0154707. doi: 10.1371/journal.pone.0154707. eCollection 2016.

24.

Unconventional magnetisation texture in graphene/cobalt hybrids.

Vu AD, Coraux J, Chen G, N'Diaye AT, Schmid AK, Rougemaille N.

Sci Rep. 2016 Apr 26;6:24783. doi: 10.1038/srep24783.

25.

Low temperature growth of cobalt on Cr2O3(0 0 0 1).

Cao S, Zhang X, Komesu T, Chen G, Schmid AK, Yue L, Tanabe I, Echtenkamp W, Wang Y, Binek C, Dowben PA.

J Phys Condens Matter. 2016 Feb 3;28(4):046002. doi: 10.1088/0953-8984/28/4/046002. Epub 2016 Jan 6.

PMID:
26732426
26.

Anatomy and Giant Enhancement of the Perpendicular Magnetic Anisotropy of Cobalt-Graphene Heterostructures.

Yang H, Vu AD, Hallal A, Rougemaille N, Coraux J, Chen G, Schmid AK, Chshiev M.

Nano Lett. 2016 Jan 13;16(1):145-51. doi: 10.1021/acs.nanolett.5b03392. Epub 2015 Dec 10.

PMID:
26641927
27.

Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli.

Kulp AJ, Sun B, Ai T, Manning AJ, Orench-Rivera N, Schmid AK, Kuehn MJ.

PLoS One. 2015 Sep 25;10(9):e0139200. doi: 10.1371/journal.pone.0139200. eCollection 2015.

28.

Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein.

Dulmage KA, Todor H, Schmid AK.

MBio. 2015 Sep 8;6(5):e00649-15. doi: 10.1128/mBio.00649-15.

29.

Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences.

Todor H, Gooding J, Ilkayeva OR, Schmid AK.

PLoS One. 2015 Aug 18;10(8):e0135693. doi: 10.1371/journal.pone.0135693. eCollection 2015.

30.

Imaging and Tailoring the Chirality of Domain Walls in Magnetic Films.

Chen G, Schmid AK.

Adv Mater. 2015 Oct 14;27(38):5738-43. doi: 10.1002/adma.201500160. Epub 2015 May 28.

PMID:
26032892
31.

Systems biology approaches to defining transcription regulatory networks in halophilic archaea.

Darnell CL, Schmid AK.

Methods. 2015 Sep 15;86:102-14. doi: 10.1016/j.ymeth.2015.04.034. Epub 2015 May 12.

PMID:
25976837
32.

Unlocking Bloch-type chirality in ultrathin magnets through uniaxial strain.

Chen G, N'Diaye AT, Kang SP, Kwon HY, Won C, Wu Y, Qiu ZQ, Schmid AK.

Nat Commun. 2015 Mar 23;6:6598. doi: 10.1038/ncomms7598.

PMID:
25798953
33.

A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea.

Tonner PD, Pittman AM, Gulli JG, Sharma K, Schmid AK.

PLoS Genet. 2015 Jan 8;11(1):e1004912. doi: 10.1371/journal.pgen.1004912. eCollection 2015 Jan.

34.

A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum.

Todor H, Dulmage K, Gillum N, Bain JR, Muehlbauer MJ, Schmid AK.

Mol Microbiol. 2014 Sep;93(6):1172-82. doi: 10.1111/mmi.12726. Epub 2014 Aug 11.

35.

A novel low energy electron microscope for DNA sequencing and surface analysis.

Mankos M, Shadman K, Persson HH, N'Diaye AT, Schmid AK, Davis RW.

Ultramicroscopy. 2014 Oct;145:36-49. doi: 10.1016/j.ultramic.2014.01.007. Epub 2014 Jan 31.

36.

Tailoring the chirality of magnetic domain walls by interface engineering.

Chen G, Ma T, N'Diaye AT, Kwon H, Won C, Wu Y, Schmid AK.

Nat Commun. 2013;4:2671. doi: 10.1038/ncomms3671.

PMID:
24154595
37.

Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea.

Todor H, Sharma K, Pittman AM, Schmid AK.

Nucleic Acids Res. 2013 Oct;41(18):8546-58. doi: 10.1093/nar/gkt659. Epub 2013 Jul 26.

38.

Minimizing electrostatic charging of an aperture used to produce in-focus phase contrast in the TEM.

Glaeser RM, Sassolini S, Cambie R, Jin J, Cabrini S, Schmid AK, Danev R, Buijsse B, Csencsits R, Downing KH, Larson DM, Typke D, Han BG.

Ultramicroscopy. 2013 Dec;135:6-15. doi: 10.1016/j.ultramic.2013.05.023. Epub 2013 Jun 8.

39.

Progress toward an aberration-corrected low energy electron microscope for DNA sequencing and surface analysis.

Mankos M, Shadman K, N'diaye AT, Schmid AK, Persson HH, Davis RW.

J Vac Sci Technol B Nanotechnol Microelectron. 2012 Nov;30(6):6F402. Epub 2012 Oct 26.

40.

Novel chiral magnetic domain wall structure in Fe/Ni/Cu(001) films.

Chen G, Zhu J, Quesada A, Li J, N'Diaye AT, Huo Y, Ma TP, Chen Y, Kwon HY, Won C, Qiu ZQ, Schmid AK, Wu YZ.

Phys Rev Lett. 2013 Apr 26;110(17):177204. Epub 2013 Apr 24.

PMID:
23679766
41.

Micromagnetism in (001) magnetite by spin-polarized low-energy electron microscopy.

de la Figuera J, Vergara L, N'diaye AT, Quesada A, Schmid AK.

Ultramicroscopy. 2013 Jul;130:77-81. doi: 10.1016/j.ultramic.2013.02.020. Epub 2013 Mar 7.

PMID:
23528222
42.

Depth-dependent magnetism in epitaxial MnSb thin films: effects of surface passivation and cleaning.

Aldous JD, Burrows CW, Maskery I, Brewer MS, Hase TP, Duffy JA, Lees MR, Sánchez-Hanke C, Decoster T, Theis W, Quesada A, Schmid AK, Bell GR.

J Phys Condens Matter. 2012 Apr 11;24(14):146002. doi: 10.1088/0953-8984/24/14/146002. Epub 2012 Mar 15.

PMID:
22418020
43.

Design of a hybrid double-sideband/single-sideband (schlieren) objective aperture suitable for electron microscopy.

Buijsse B, van Laarhoven FM, Schmid AK, Cambie R, Cabrini S, Jin J, Glaeser RM.

Ultramicroscopy. 2011 Dec;111(12):1688-95. doi: 10.1016/j.ultramic.2011.09.015. Epub 2011 Oct 4.

44.

Valence band circular dichroism in non-magnetic Ag/Ru(0001) at normal emission.

Mascaraque A, Onur Menteş T, McCarty KF, Marco JF, Schmid AK, Locatelli A, de la Figuera J.

J Phys Condens Matter. 2011 Aug 3;23(30):305006. doi: 10.1088/0953-8984/23/30/305006. Epub 2011 Jul 6.

PMID:
21734331
45.

Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon.

Schmid AK, Pan M, Sharma K, Baliga NS.

Nucleic Acids Res. 2011 Apr;39(7):2519-33. doi: 10.1093/nar/gkq1211. Epub 2010 Nov 24.

46.

A high-efficiency spin-resolved photoemission spectrometer combining time-of-flight spectroscopy with exchange-scattering polarimetry.

Jozwiak C, Graf J, Lebedev G, Andresen N, Schmid AK, Fedorov AV, El Gabaly F, Wan W, Lanzara A, Hussain Z.

Rev Sci Instrum. 2010 May;81(5):053904. doi: 10.1063/1.3427223.

PMID:
20515152
47.

Real-time observation of reactive spreading of gold on silicon.

Ferralis N, El Gabaly F, Schmid AK, Maboudian R, Carraro C.

Phys Rev Lett. 2009 Dec 18;103(25):256102. Epub 2009 Dec 18.

PMID:
20366265
48.

Preparing arrays of large atomically flat regions on single crystal substrates.

El Gabaly F, Bartelt NC, Schmid AK.

J Phys Condens Matter. 2009 Aug 5;21(31):314019. doi: 10.1088/0953-8984/21/31/314019. Epub 2009 Jul 7.

PMID:
21828580
49.

Structure and magnetism in ultrathin iron oxides characterized by low energy electron microscopy.

Santos B, Loginova E, Mascaraque A, Schmid AK, McCarty KF, de la Figuera J.

J Phys Condens Matter. 2009 Aug 5;21(31):314011. doi: 10.1088/0953-8984/21/31/314011. Epub 2009 Jul 7. Erratum in: J Phys Condens Matter. 2013 Jul 10;25(27):279501.

PMID:
21828572
50.

Prevalence of transcription promoters within archaeal operons and coding sequences.

Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS.

Mol Syst Biol. 2009;5:285. doi: 10.1038/msb.2009.42. Epub 2009 Jun 16.

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