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Items: 1 to 50 of 198

1.

The Proton Pump Inhibitor Omeprazole Does Not Promote Clostridioides difficile Colonization in a Murine Model.

Tomkovich S, Lesniak NA, Li Y, Bishop L, Fitzgerald MJ, Schloss PD.

mSphere. 2019 Nov 20;4(6). pii: e00693-19. doi: 10.1128/mSphere.00693-19.

2.

Reintroducing mothur: 10 Years Later.

Schloss PD.

Appl Environ Microbiol. 2020 Jan 7;86(2). pii: e02343-19. doi: 10.1128/AEM.02343-19. Print 2020 Jan 7. Review.

3.

Explaining Order among Those Who Share Positions in the Author Byline.

Casadevall A, Schloss P.

mBio. 2019 Sep 17;10(5). pii: e01981-19. doi: 10.1128/mBio.01981-19.

4.

Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure.

Sze MA, Topçuoğlu BD, Lesniak NA, Ruffin MT 4th, Schloss PD.

mBio. 2019 Jul 2;10(4). pii: e01454-19. doi: 10.1128/mBio.01454-19.

5.

Erratum for Baxter et al., "The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome".

Baxter NT, Lesniak NA, Sinani H, Schloss PD, Koropatkin NM.

mSphere. 2019 May 22;4(3). pii: e00347-19. doi: 10.1128/mSphere.00347-19. No abstract available.

6.

The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data.

Sze MA, Schloss PD.

mSphere. 2019 May 22;4(3). pii: e00163-19. doi: 10.1128/mSphere.00163-19.

7.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
8.

The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome.

Baxter NT, Lesniak NA, Sinani H, Schloss PD, Koropatkin NM.

mSphere. 2019 Feb 6;4(1). pii: e00528-18. doi: 10.1128/mSphere.00528-18. Erratum in: mSphere. 2019 May 22;4(3):.

9.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

PMID:
30679363
10.

Nonsteroidal Anti-inflammatory Drugs Alter the Microbiota and Exacerbate Clostridium difficile Colitis while Dysregulating the Inflammatory Response.

Maseda D, Zackular JP, Trindade B, Kirk L, Roxas JL, Rogers LM, Washington MK, Du L, Koyama T, Viswanathan VK, Vedantam G, Schloss PD, Crofford LJ, Skaar EP, Aronoff DM.

mBio. 2019 Jan 8;10(1). pii: e02282-18. doi: 10.1128/mBio.02282-18.

11.

Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome.

Hannigan GD, Duhaime MB, Ruffin MT 4th, Koumpouras CC, Schloss PD.

mBio. 2018 Nov 20;9(6). pii: e02248-18. doi: 10.1128/mBio.02248-18.

12.

Erratum for Sze and Schloss, "Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors".

Sze MA, Schloss PD.

mBio. 2018 Oct 16;9(5). pii: e02076-18. doi: 10.1128/mBio.02076-18. No abstract available.

13.

Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization.

Jenior ML, Leslie JL, Young VB, Schloss PD.

mSphere. 2018 Jun 27;3(3). pii: e00261-18. doi: 10.1128/mSphere.00261-18. Print 2018 Jun 27.

14.

Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors.

Sze MA, Schloss PD.

mBio. 2018 Jun 5;9(3). pii: e00630-18. doi: 10.1128/mBio.00630-18. Erratum in: MBio. 2018 Oct 16;9(5):.

15.
16.

Basal glucocorticoid receptor activation induces proliferation and inhibits neuronal differentiation of human induced pluripotent stem cell-derived neuronal precursor cells.

Nürnberg E, Horschitz S, Schloss P, Meyer-Lindenberg A.

J Steroid Biochem Mol Biol. 2018 Sep;182:119-126. doi: 10.1016/j.jsbmb.2018.04.017. Epub 2018 May 8.

PMID:
29751108
17.

In Defense of an Academic Career in Microbiology.

Schloss PD.

mSphere. 2018 May 2;3(3). pii: e00575-17. doi: 10.1128/mSphere.00575-17. eCollection 2018 May-Jun.

18.

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.

Hannigan GD, Duhaime MB, Koutra D, Schloss PD.

PLoS Comput Biol. 2018 Apr 18;14(4):e1006099. doi: 10.1371/journal.pcbi.1006099. eCollection 2018 Apr.

19.

Spatial Variation of the Native Colon Microbiota in Healthy Adults.

Flynn KJ, Ruffin MT 4th, Turgeon DK, Schloss PD.

Cancer Prev Res (Phila). 2018 Jul;11(7):393-402. doi: 10.1158/1940-6207.CAPR-17-0370. Epub 2018 Apr 10.

20.

Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn's Disease Patients.

Doherty MK, Ding T, Koumpouras C, Telesco SE, Monast C, Das A, Brodmerkel C, Schloss PD.

mBio. 2018 Mar 13;9(2). pii: e02120-17. doi: 10.1128/mBio.02120-17.

21.

Human dopamine transporter: the first implementation of a combined in silico/in vitro approach revealing the substrate and inhibitor specificities.

Djikic T, Martí Y, Spyrakis F, Lau T, Benedetti P, Davey G, Schloss P, Yelekci K.

J Biomol Struct Dyn. 2019 Feb;37(2):291-306. doi: 10.1080/07391102.2018.1426044. Epub 2018 Jan 26.

22.

Erratum for Sze and Schloss, "Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome".

Sze MA, Schloss PD.

mBio. 2017 Dec 5;8(6). pii: e01995-17. doi: 10.1128/mBio.01995-17. No abstract available.

23.

Erratum for Schloss et al., "Support Science by Publishing in Scientific Society Journals".

Schloss PD, Johnston M, Casadevall A.

mBio. 2017 Nov 21;8(6). pii: e01926-17. doi: 10.1128/mBio.01926-17. No abstract available.

24.

Normalization of the microbiota in patients after treatment for colonic lesions.

Sze MA, Baxter NT, Ruffin MT 4th, Rogers MAM, Schloss PD.

Microbiome. 2017 Nov 16;5(1):150. doi: 10.1186/s40168-017-0366-3.

25.

Support Science by Publishing in Scientific Society Journals.

Schloss PD, Johnston M, Casadevall A.

mBio. 2017 Sep 26;8(5). pii: e01633-17. doi: 10.1128/mBio.01633-17. Erratum in: MBio. 2017 Nov 21;8(6):.

26.

Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes.

Jenior ML, Leslie JL, Young VB, Schloss PD.

mSystems. 2017 Jul 25;2(4). pii: e00063-17. doi: 10.1128/mSystems.00063-17. eCollection 2017 Jul-Aug.

27.

Methyl-4-phenylpyridinium (MPP+) differentially affects monoamine release and re-uptake in murine embryonic stem cell-derived dopaminergic and serotonergic neurons.

Martí Y, Matthaeus F, Lau T, Schloss P.

Mol Cell Neurosci. 2017 Sep;83:37-45. doi: 10.1016/j.mcn.2017.06.009. Epub 2017 Jun 30.

PMID:
28673772
28.

NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila.

Seregin SS, Golovchenko N, Schaf B, Chen J, Pudlo NA, Mitchell J, Baxter NT, Zhao L, Schloss PD, Martens EC, Eaton KA, Chen GY.

Cell Rep. 2017 Jun 6;19(10):2174. doi: 10.1016/j.celrep.2017.05.074. No abstract available.

29.

Preprinting Microbiology.

Schloss PD.

mBio. 2017 May 23;8(3). pii: e00438-17. doi: 10.1128/mBio.00438-17.

30.

NLRP6 Protects Il10-/- Mice from Colitis by Limiting Colonization of Akkermansia muciniphila.

Seregin SS, Golovchenko N, Schaf B, Chen J, Pudlo NA, Mitchell J, Baxter NT, Zhao L, Schloss PD, Martens EC, Eaton KA, Chen GY.

Cell Rep. 2017 Apr 25;19(4):733-745. doi: 10.1016/j.celrep.2017.03.080. Erratum in: Cell Rep. 2017 Jun 6;19(10 ):2174.

31.

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units.

Westcott SL, Schloss PD.

mSphere. 2017 Mar 8;2(2). pii: e00073-17. doi: 10.1128/mSphereDirect.00073-17. eCollection 2017 Mar-Apr.

32.

Towards trans-diagnostic mechanisms in psychiatry: neurobehavioral profile of rats with a loss-of-function point mutation in the dopamine transporter gene.

Vengeliene V, Bespalov A, Roßmanith M, Horschitz S, Berger S, Relo AL, Noori HR, Schneider P, Enkel T, Bartsch D, Schneider M, Behl B, Hansson AC, Schloss P, Spanagel R.

Dis Model Mech. 2017 Apr 1;10(4):451-461. doi: 10.1242/dmm.027623. Epub 2017 Feb 6.

33.

DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model.

Baxter NT, Koumpouras CC, Rogers MA, Ruffin MT 4th, Schloss PD.

Microbiome. 2016 Nov 14;4(1):59.

34.
35.

The allosteric citalopram binding site differentially interferes with neuronal firing rate and SERT trafficking in serotonergic neurons.

Matthäus F, Haddjeri N, Sánchez C, Martí Y, Bahri S, Rovera R, Schloss P, Lau T.

Eur Neuropsychopharmacol. 2016 Nov;26(11):1806-1817. doi: 10.1016/j.euroneuro.2016.09.001. Epub 2016 Sep 21.

PMID:
27665061
36.

Microbial Characterization of Qatari Barchan Sand Dunes.

Abdul Majid S, Graw MF, Chatziefthimiou AD, Nguyen H, Richer R, Louge M, Sultan AA, Schloss P, Hay AG.

PLoS One. 2016 Sep 21;11(9):e0161836. doi: 10.1371/journal.pone.0161836. eCollection 2016.

37.

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome.

Sze MA, Schloss PD.

mBio. 2016 Aug 23;7(4). pii: e01018-16. doi: 10.1128/mBio.01018-16. Erratum in: MBio. 2017 Dec 5;8(6):.

38.

Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer.

Flynn KJ, Baxter NT, Schloss PD.

mSphere. 2016 May 11;1(3). pii: e00102-16. doi: 10.1128/mSphere.00102-16. eCollection 2016 May-Jun. Review.

39.

Manipulation of the Gut Microbiota Reveals Role in Colon Tumorigenesis.

Zackular JP, Baxter NT, Chen GY, Schloss PD.

mSphere. 2015 Nov 4;1(1). pii: e00001-15. doi: 10.1128/mSphere.00001-15. eCollection 2016 Jan-Feb.

40.

Status of the Archaeal and Bacterial Census: an Update.

Schloss PD, Girard RA, Martin T, Edwards J, Thrash JC.

mBio. 2016 May 17;7(3). pii: e00201-16. doi: 10.1128/mBio.00201-16.

41.

Protein Kinases Alter the Allosteric Modulation of the Serotonin Transporter In Vivo and In Vitro.

Mnie-Filali O, Lau T, Matthaeus F, Abrial E, Delcourte S, El Mansari M, Pershon A, Schloss P, Sánchez C, Haddjeri N.

CNS Neurosci Ther. 2016 Aug;22(8):691-9. doi: 10.1111/cns.12562. Epub 2016 May 12.

42.

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system.

Schloss PD, Jenior ML, Koumpouras CC, Westcott SL, Highlander SK.

PeerJ. 2016 Mar 28;4:e1869. doi: 10.7717/peerj.1869. eCollection 2016.

43.

Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions.

Baxter NT, Ruffin MT 4th, Rogers MA, Schloss PD.

Genome Med. 2016 Apr 6;8(1):37. doi: 10.1186/s13073-016-0290-3.

44.

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units.

Westcott SL, Schloss PD.

PeerJ. 2015 Dec 8;3:e1487. doi: 10.7717/peerj.1487. eCollection 2015.

45.

Nurturing the microbiome field.

Schloss P.

Science. 2015 Nov 27;350(6264):1044. doi: 10.1126/science.350.6264.1044. No abstract available.

PMID:
26612945
46.

Shine bright: considerations on the use of fluorescent substrates in living monoaminergic neurons in vitro.

Schloss P, Matthäus F, Lau T.

Neural Regen Res. 2015 Sep;10(9):1383-5. doi: 10.4103/1673-5374.165223. No abstract available.

47.

Differential Uptake Mechanisms of Fluorescent Substrates into Stem-Cell-Derived Serotonergic Neurons.

Matthaeus F, Schloss P, Lau T.

ACS Chem Neurosci. 2015 Dec 16;6(12):1906-12. doi: 10.1021/acschemneuro.5b00219. Epub 2015 Oct 30.

PMID:
26503837
48.

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.

Beck JM, Schloss PD, Venkataraman A, Twigg H 3rd, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, Frank I, Ghedin E, Huang L, Lynch SV, Morris A, Palmer BE, Schmidt TM, Sodergren E, Weinstock GM, Young VB; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2015 Dec 1;192(11):1335-44. doi: 10.1164/rccm.201501-0128OC.

49.
50.

Impact of preconditioning with retinoic acid during early development on morphological and functional characteristics of human induced pluripotent stem cell-derived neurons.

Horschitz S, Matthäus F, Groß A, Rosner J, Galach M, Greffrath W, Treede RD, Utikal J, Schloss P, Meyer-Lindenberg A.

Stem Cell Res. 2015 Jul;15(1):30-41. doi: 10.1016/j.scr.2015.04.007. Epub 2015 May 9.

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