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Erratum for Manoharan et al., "Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota".

Manoharan L, Kozlowski JA, Murdoch RW, Löffler FE, Sousa FL, Schleper C.

MBio. 2019 Oct 29;10(5). pii: e02509-19. doi: 10.1128/mBio.02509-19. No abstract available.


CRISPR-mediated gene silencing reveals involvement of the archaeal S-layer in cell division and virus infection.

Zink IA, Pfeifer K, Wimmer E, Sleytr UB, Schuster B, Schleper C.

Nat Commun. 2019 Oct 22;10(1):4797. doi: 10.1038/s41467-019-12745-x.


Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota.

Manoharan L, Kozlowski JA, Murdoch RW, Löffler FE, Sousa FL, Schleper C.

MBio. 2019 Sep 10;10(5). pii: e02039-19. doi: 10.1128/mBio.02039-19. Erratum in: MBio. 2019 Oct 29;10(5):.


Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures.

Alves RJE, Kerou M, Zappe A, Bittner R, Abby SS, Schmidt HA, Pfeifer K, Schleper C.

Front Microbiol. 2019 Jul 17;10:1571. doi: 10.3389/fmicb.2019.01571. eCollection 2019.


Indications for a moonlighting function of translation factor aIF5A in the crenarchaeum Sulfolobus solfataricus.

Bassani F, Zink IA, Pribasnig T, Wolfinger MT, Romagnoli A, Resch A, Schleper C, Bläsi U, La Teana A.

RNA Biol. 2019 May;16(5):675-685. doi: 10.1080/15476286.2019.1582953. Epub 2019 Mar 5.


A plant-microbe interaction framework explaining nutrient effects on primary production.

Čapek P, Manzoni S, Kaštovská E, Wild B, Diáková K, Bárta J, Schnecker J, Biasi C, Martikainen PJ, Alves RJE, Guggenberger G, Gentsch N, Hugelius G, Palmtag J, Mikutta R, Shibistova O, Urich T, Schleper C, Richter A, Šantrůčková H.

Nat Ecol Evol. 2018 Oct;2(10):1588-1596. doi: 10.1038/s41559-018-0662-8. Epub 2018 Sep 10.


Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation.

Söllinger A, Tveit AT, Poulsen M, Noel SJ, Bengtsson M, Bernhardt J, Frydendahl Hellwing AL, Lund P, Riedel K, Schleper C, Højberg O, Urich T.

mSystems. 2018 Aug 7;3(4). pii: e00038-18. doi: 10.1128/mSystems.00038-18. eCollection 2018 Jul-Aug.


Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes.

Alves RJE, Minh BQ, Urich T, von Haeseler A, Schleper C.

Nat Commun. 2018 Apr 17;9(1):1517. doi: 10.1038/s41467-018-03861-1.


Biological methane production under putative Enceladus-like conditions.

Taubner RS, Pappenreiter P, Zwicker J, Smrzka D, Pruckner C, Kolar P, Bernacchi S, Seifert AH, Krajete A, Bach W, Peckmann J, Paulik C, Firneis MG, Schleper C, Rittmann SKR.

Nat Commun. 2018 Feb 27;9(1):748. doi: 10.1038/s41467-018-02876-y.


Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome.

Abby SS, Melcher M, Kerou M, Krupovic M, Stieglmeier M, Rossel C, Pfeifer K, Schleper C.

Front Microbiol. 2018 Jan 26;9:28. doi: 10.3389/fmicb.2018.00028. eCollection 2018.


Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.


Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

Kerou M, Offre P, Valledor L, Abby SS, Melcher M, Nagler M, Weckwerth W, Schleper C.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7937-E7946. Epub 2016 Nov 18.


A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment.

Jung MY, Kim JG, Sinninghe Damsté JS, Rijpstra WI, Madsen EL, Kim SJ, Hong H, Si OJ, Kerou M, Schleper C, Rhee SK.

Environ Microbiol Rep. 2016 Dec;8(6):983-992. doi: 10.1111/1758-2229.12477. Epub 2016 Oct 24.


Efficient CRISPR-Mediated Post-Transcriptional Gene Silencing in a Hyperthermophilic Archaeon Using Multiplexed crRNA Expression.

Zebec Z, Zink IA, Kerou M, Schleper C.

G3 (Bethesda). 2016 Oct 13;6(10):3161-3168. doi: 10.1534/g3.116.032482.


Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils.

Wild B, Gentsch N, Čapek P, Diáková K, Alves RJ, Bárta J, Gittel A, Hugelius G, Knoltsch A, Kuhry P, Lashchinskiy N, Mikutta R, Palmtag J, Schleper C, Schnecker J, Shibistova O, Takriti M, Torsvik VL, Urich T, Watzka M, Šantrůčková H, Guggenberger G, Richter A.

Sci Rep. 2016 May 9;6:25607. doi: 10.1038/srep25607.


Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.


Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota.

Kozlowski JA, Stieglmeier M, Schleper C, Klotz MG, Stein LY.

ISME J. 2016 Aug;10(8):1836-45. doi: 10.1038/ismej.2016.2. Epub 2016 Feb 16.


Assessing the Ecophysiology of Methanogens in the Context of Recent Astrobiological and Planetological Studies.

Taubner RS, Schleper C, Firneis MG, Rittmann SK.

Life (Basel). 2015 Dec 3;5(4):1652-86. doi: 10.3390/life5041652. Review.


Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis.

Berry D, Kuzyk O, Rauch I, Heider S, Schwab C, Hainzl E, Decker T, Müller M, Strobl B, Schleper C, Urich T, Wagner M, Kenner L, Loy A.

Front Microbiol. 2015 Dec 15;6:1408. doi: 10.3389/fmicb.2015.01408. eCollection 2015.


Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences.

Söllinger A, Schwab C, Weinmaier T, Loy A, Tveit AT, Schleper C, Urich T.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv149. doi: 10.1093/femsec/fiv149. Epub 2015 Nov 26.


Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation.

Bayer B, Vojvoda J, Offre P, Alves RJ, Elisabeth NH, Garcia JA, Volland JM, Srivastava A, Schleper C, Herndl GJ.

ISME J. 2016 May;10(5):1051-63. doi: 10.1038/ismej.2015.200. Epub 2015 Nov 3.


Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis.

Hainzl E, Stockinger S, Rauch I, Heider S, Berry D, Lassnig C, Schwab C, Rosebrock F, Milinovich G, Schlederer M, Wagner M, Schleper C, Loy A, Urich T, Kenner L, Han X, Decker T, Strobl B, Müller M.

J Immunol. 2015 Nov 15;195(10):5011-24. doi: 10.4049/jimmunol.1402565. Epub 2015 Oct 2.


Complex archaea that bridge the gap between prokaryotes and eukaryotes.

Spang A, Saw JH, Jørgensen SL, Zaremba-Niedzwiedzka K, Martijn J, Lind AE, van Eijk R, Schleper C, Guy L, Ettema TJG.

Nature. 2015 May 14;521(7551):173-179. doi: 10.1038/nature14447. Epub 2015 May 6.


Inhibitory effects of C2 to C10 1-alkynes on ammonia oxidation in two Nitrososphaera species.

Taylor AE, Taylor K, Tennigkeit B, Palatinszky M, Stieglmeier M, Myrold DD, Schleper C, Wagner M, Bottomley PJ.

Appl Environ Microbiol. 2015 Mar;81(6):1942-8. doi: 10.1128/AEM.03688-14. Epub 2015 Jan 9.


Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland.

Gittel A, Bárta J, Kohoutová I, Schnecker J, Wild B, Capek P, Kaiser C, Torsvik VL, Richter A, Schleper C, Urich T.

Front Microbiol. 2014 Oct 16;5:541. doi: 10.3389/fmicb.2014.00541. eCollection 2014.


Variability of the transporter gene complement in ammonia-oxidizing archaea.

Offre P, Kerou M, Spang A, Schleper C.

Trends Microbiol. 2014 Dec;22(12):665-75. doi: 10.1016/j.tim.2014.07.007. Epub 2014 Aug 26.


Type I interferons have opposing effects during the emergence and recovery phases of colitis.

Rauch I, Hainzl E, Rosebrock F, Heider S, Schwab C, Berry D, Stoiber D, Wagner M, Schleper C, Loy A, Urich T, Müller M, Strobl B, Kenner L, Decker T.

Eur J Immunol. 2014 Sep;44(9):2749-60. doi: 10.1002/eji.201344401. Epub 2014 Aug 25.


Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota.

Stieglmeier M, Klingl A, Alves RJ, Rittmann SK, Melcher M, Leisch N, Schleper C.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2738-52. doi: 10.1099/ijs.0.063172-0. Epub 2014 Jun 6.


Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp. P22, Isolated from Populus.

Hanak AM, Nagler M, Weinmaier T, Sun X, Fragner L, Schwab C, Rattei T, Ulrich K, Ewald D, Engel M, Schloter M, Bittner R, Schleper C, Weckwerth W.

Genome Announc. 2014 Apr 10;2(2). pii: e00276-14. doi: 10.1128/genomeA.00276-14.


Gene expression of lactobacilli in murine forestomach biofilms.

Schwab C, Tveit AT, Schleper C, Urich T.

Microb Biotechnol. 2014 Jul;7(4):347-59. doi: 10.1111/1751-7915.12126. Epub 2014 Apr 4.


CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus.

Zebec Z, Manica A, Zhang J, White MF, Schleper C.

Nucleic Acids Res. 2014 Apr;42(8):5280-8. doi: 10.1093/nar/gku161. Epub 2014 Mar 6.


Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial.

Prommer J, Wanek W, Hofhansl F, Trojan D, Offre P, Urich T, Schleper C, Sassmann S, Kitzler B, Soja G, Hood-Nowotny RC.

PLoS One. 2014 Jan 30;9(1):e86388. doi: 10.1371/journal.pone.0086388. eCollection 2014.


Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea.

Stieglmeier M, Mooshammer M, Kitzler B, Wanek W, Zechmeister-Boltenstern S, Richter A, Schleper C.

ISME J. 2014 May;8(5):1135-46. doi: 10.1038/ismej.2013.220. Epub 2014 Jan 9.


Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery.

Schwab C, Berry D, Rauch I, Rennisch I, Ramesmayer J, Hainzl E, Heider S, Decker T, Kenner L, Müller M, Strobl B, Wagner M, Schleper C, Loy A, Urich T.

ISME J. 2014 May;8(5):1101-14. doi: 10.1038/ismej.2013.223. Epub 2014 Jan 9.


Distinct microbial communities associated with buried soils in the Siberian tundra.

Gittel A, Bárta J, Kohoutová I, Mikutta R, Owens S, Gilbert J, Schnecker J, Wild B, Hannisdal B, Maerz J, Lashchinskiy N, Capek P, Santrůčková H, Gentsch N, Shibistova O, Guggenberger G, Richter A, Torsvik VL, Schleper C, Urich T.

ISME J. 2014 Apr;8(4):841-53. doi: 10.1038/ismej.2013.219. Epub 2013 Dec 12.


Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics.

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L.

Environ Microbiol. 2014 Sep;16(9):2699-710. doi: 10.1111/1462-2920.12283. Epub 2013 Oct 27.


Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge.

Jørgensen SL, Thorseth IH, Pedersen RB, Baumberger T, Schleper C.

Front Microbiol. 2013 Oct 4;4:299. doi: 10.3389/fmicb.2013.00299. eCollection 2013.


The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries.

Albers SV, Forterre P, Prangishvili D, Schleper C.

Nat Rev Microbiol. 2013 Oct;11(10):713-9. doi: 10.1038/nrmicro3124. Review.


Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus.

Manica A, Zebec Z, Steinkellner J, Schleper C.

Nucleic Acids Res. 2013 Dec;41(22):10509-17. doi: 10.1093/nar/gkt767. Epub 2013 Sep 9.


Archaea in biogeochemical cycles.

Offre P, Spang A, Schleper C.

Annu Rev Microbiol. 2013;67:437-57. doi: 10.1146/annurev-micro-092412-155614. Epub 2013 Jun 26. Review.


Responses of the terrestrial ammonia-oxidizing archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidizing bacterium Nitrosospira multiformis to nitrification inhibitors.

Shen T, Stieglmeier M, Dai J, Urich T, Schleper C.

FEMS Microbiol Lett. 2013 Jul;344(2):121-9. doi: 10.1111/1574-6968.12164. Epub 2013 May 20.


CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus.

Manica A, Schleper C.

RNA Biol. 2013 May;10(5):671-8. doi: 10.4161/rna.24154. Epub 2013 Mar 27. Review.


Temporal and spatial coexistence of archaeal and bacterial amoA genes and gene transcripts in Lake Lucerne.

Vissers EW, Anselmetti FS, Bodelier PL, Muyzer G, Schleper C, Tourna M, Laanbroek HJ.

Archaea. 2013;2013:289478. doi: 10.1155/2013/289478. Epub 2013 Mar 5.


Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota.

Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C.

Res Microbiol. 2013 Jun;164(5):425-38. doi: 10.1016/j.resmic.2013.02.006. Epub 2013 Mar 5.


Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea.

Alves RJ, Wanek W, Zappe A, Richter A, Svenning MM, Schleper C, Urich T.

ISME J. 2013 Aug;7(8):1620-31. doi: 10.1038/ismej.2013.35. Epub 2013 Mar 7.


Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen.

Poulsen M, Schwab C, Jensen BB, Engberg RM, Spang A, Canibe N, Højberg O, Milinovich G, Fragner L, Schleper C, Weckwerth W, Lund P, Schramm A, Urich T.

Nat Commun. 2013;4:1428. doi: 10.1038/ncomms2432. Erratum in: Nat Commun. 2013;4:1947.


The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations.

Spang A, Poehlein A, Offre P, Zumbrägel S, Haider S, Rychlik N, Nowka B, Schmeisser C, Lebedeva EV, Rattei T, Böhm C, Schmid M, Galushko A, Hatzenpichler R, Weinmaier T, Daniel R, Schleper C, Spieck E, Streit W, Wagner M.

Environ Microbiol. 2012 Dec;14(12):3122-45. doi: 10.1111/j.1462-2920.2012.02893.x. Epub 2012 Oct 12.


Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge.

Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreås L, Steen IH, Thorseth IH, Pedersen RB, Schleper C.

Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):E2846-55. doi: 10.1073/pnas.1207574109. Epub 2012 Oct 1.


Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake.

Vissers EW, Blaga CI, Bodelier PL, Muyzer G, Schleper C, Sinninghe Damsté JS, Tourna M, Laanbroek HJ.

FEMS Microbiol Ecol. 2013 Feb;83(2):515-26. doi: 10.1111/1574-6941.12013. Epub 2012 Nov 23.


Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil.

Damsté JS, Rijpstra WI, Hopmans EC, Jung MY, Kim JG, Rhee SK, Stieglmeier M, Schleper C.

Appl Environ Microbiol. 2012 Oct;78(19):6866-74. doi: 10.1128/AEM.01681-12. Epub 2012 Jul 20.

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