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Items: 1 to 50 of 288

1.

Free energy calculations elucidate substrate binding, gating mechanism, and tolerance-promoting mutations in herbicide target 4-hydroxyphenylpyruvate dioxygenase.

Schindler CEM, Hollenbach E, Mietzner T, Schleifer KJ, Zacharias M.

Protein Sci. 2019 Jun;28(6):1048-1058. doi: 10.1002/pro.3612. Epub 2019 Apr 19.

PMID:
30945368
2.

Bacteria and me: Cell walls, classification, phylogeny and the hidden microbes.

Schleifer KH.

Syst Appl Microbiol. 2017 Sep;40(6):321-328. doi: 10.1016/j.syapm.2017.07.001. Epub 2017 Jul 13. No abstract available.

PMID:
28760568
3.

Taxonomy in the age of genomics. Introduction.

Schleifer KH, Amann R, Rosselló-Móra R.

Syst Appl Microbiol. 2015 Jun;38(4):207-8. doi: 10.1016/j.syapm.2015.05.002. No abstract available.

PMID:
25994328
4.

Generalized workflow for generating highly predictive in silico off-target activity models.

Anger LT, Wolf A, Schleifer KJ, Schrenk D, Rohrer SG.

J Chem Inf Model. 2014 Sep 22;54(9):2411-22. doi: 10.1021/ci500342q. Epub 2014 Sep 10.

PMID:
25137615
5.

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.

Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W, Schleifer KH, Whitman WB, Euzéby J, Amann R, Rosselló-Móra R.

Nat Rev Microbiol. 2014 Sep;12(9):635-45. doi: 10.1038/nrmicro3330. Review.

PMID:
25118885
6.

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names.

Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew S, Moore ER, Gomila M, Nakagawa Y, Janssens D, De Vos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, R Arahal D, Spieck E, Pommerening Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby JP, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2013 Feb;36(1):69-73. doi: 10.1016/j.syapm.2012.12.006. Epub 2013 Feb 11. Review.

PMID:
23410935
7.

White matter structural differences in young children with type 1 diabetes: a diffusion tensor imaging study.

Aye T, Barnea-Goraly N, Ambler C, Hoang S, Schleifer K, Park Y, Drobny J, Wilson DM, Reiss AL, Buckingham BA.

Diabetes Care. 2012 Nov;35(11):2167-73. doi: 10.2337/dc12-0017. Epub 2012 Sep 10.

8.

The feasibility of detecting neuropsychologic and neuroanatomic effects of type 1 diabetes in young children.

Aye T, Reiss AL, Kesler S, Hoang S, Drobny J, Park Y, Schleifer K, Baumgartner H, Wilson DM, Buckingham BA.

Diabetes Care. 2011 Jul;34(7):1458-62. doi: 10.2337/dc10-2164. Epub 2011 May 11.

9.

Release LTPs104 of the All-Species Living Tree.

Munoz R, Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer KH, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2011 May;34(3):169-70. doi: 10.1016/j.syapm.2011.03.001. No abstract available.

PMID:
21497273
10.

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses.

Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer KH, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2010 Oct;33(6):291-9. doi: 10.1016/j.syapm.2010.08.001.

PMID:
20817437
11.

"Candidatus anadelfobacter veles" and "Candidatus cyrtobacter comes," two new rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea).

Vannini C, Ferrantini F, Schleifer KH, Ludwig W, Verni F, Petroni G.

Appl Environ Microbiol. 2010 Jun;76(12):4047-54. doi: 10.1128/AEM.03105-09. Epub 2010 Apr 30.

12.

Classification of Bacteria and Archaea: past, present and future.

Schleifer KH.

Syst Appl Microbiol. 2009 Dec;32(8):533-42. doi: 10.1016/j.syapm.2009.09.002. Epub 2009 Oct 12. Review.

PMID:
19819658
13.

Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA).

Engel AS, Meisinger DB, Porter ML, Payn RA, Schmid M, Stern LA, Schleifer KH, Lee NM.

ISME J. 2010 Jan;4(1):98-110. doi: 10.1038/ismej.2009.91. Epub 2009 Aug 13.

PMID:
19675595
14.

The diversity of fungi in aerobic sewage granules assessed by 18S rRNA gene and ITS sequence analyses.

Weber SD, Hofmann A, Pilhofer M, Wanner G, Agerer R, Ludwig W, Schleifer KH, Fried J.

FEMS Microbiol Ecol. 2009 May;68(2):246-54. doi: 10.1111/j.1574-6941.2009.00660.x.

15.

Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment.

Pavlekovic M, Schmid MC, Schmider-Poignee N, Spring S, Pilhofer M, Gaul T, Fiandaca M, Löffler FE, Jetten M, Schleifer KH, Lee NM.

J Microbiol Methods. 2009 Aug;78(2):119-26. doi: 10.1016/j.mimet.2009.04.003. Epub 2009 Apr 20.

PMID:
19389431
16.

Fluorescence in situ hybridization for intracellular localization of nifH mRNA.

Pilhofer M, Pavlekovic M, Lee NM, Ludwig W, Schleifer KH.

Syst Appl Microbiol. 2009 May;32(3):186-92. doi: 10.1016/j.syapm.2008.12.007. Epub 2009 Feb 12.

PMID:
19217232
17.

Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples.

Pratscher J, Stichternoth C, Fichtl K, Schleifer KH, Braker G.

Appl Environ Microbiol. 2009 Feb;75(3):802-10. doi: 10.1128/AEM.01992-08. Epub 2008 Dec 12.

18.

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2008 Sep;31(4):241-50. doi: 10.1016/j.syapm.2008.07.001. Epub 2008 Aug 9.

PMID:
18692976
19.

Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes.

Pilhofer M, Rappl K, Eckl C, Bauer AP, Ludwig W, Schleifer KH, Petroni G.

J Bacteriol. 2008 May;190(9):3192-202. doi: 10.1128/JB.01797-07. Epub 2008 Feb 29.

20.

A novel DNA microarray design for accurate and straightforward identification of Escherichia coli safety and laboratory strains.

Bauer AP, Ludwig W, Schleifer KH.

Syst Appl Microbiol. 2008 Mar;31(1):50-61. doi: 10.1016/j.syapm.2008.01.001. Epub 2008 Feb 11.

PMID:
18262744
21.

The International Union of Microbiological Societies, IUMS.

Schleifer KH.

Res Microbiol. 2008 Jan-Feb;159(1):45-8. Epub 2007 Nov 12. No abstract available.

PMID:
18162372
22.

Characterization of bacterial operons consisting of two tubulins and a kinesin-like gene by the novel Two-Step Gene Walking method.

Pilhofer M, Bauer AP, Schrallhammer M, Richter L, Ludwig W, Schleifer KH, Petroni G.

Nucleic Acids Res. 2007;35(20):e135. Epub 2007 Oct 16.

23.

Microbial composition and structure of aerobic granular sewage biofilms.

Weber SD, Ludwig W, Schleifer KH, Fried J.

Appl Environ Microbiol. 2007 Oct;73(19):6233-40. Epub 2007 Aug 17. Erratum in: Appl Environ Microbiol. 2008 Jan;74(1):343.

24.

In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA).

Meisinger DB, Zimmermann J, Ludwig W, Schleifer KH, Wanner G, Schmid M, Bennett PC, Engel AS, Lee NM.

Environ Microbiol. 2007 Jun;9(6):1523-34.

PMID:
17504489
25.

Coexistence of tubulins and ftsZ in different Prosthecobacter species.

Pilhofer M, Rosati G, Ludwig W, Schleifer KH, Petroni G.

Mol Biol Evol. 2007 Jul;24(7):1439-42. Epub 2007 Apr 4.

PMID:
17412703
26.

Rapid identification of Escherichia coli safety and laboratory strain lineages based on Multiplex-PCR.

Bauer AP, Dieckmann SM, Ludwig W, Schleifer KH.

FEMS Microbiol Lett. 2007 Apr;269(1):36-40.

27.

Molecular characterization of the obligate endosymbiont "Caedibacter macronucleorum"Fokin and Görtz, 1993 and of its host Paramecium duboscqui strain Ku4-8.

Schrallhammer M, Fokin SI, Schleifer KH, Petroni G.

J Eukaryot Microbiol. 2006 Nov-Dec;53(6):499-506.

PMID:
17123414
28.

A new scope for Systematic and Applied Microbiology.

Schleifer KH, Rossello-Mora R, Amann R.

Syst Appl Microbiol. 2006 Jan;29(1):1-2. Epub 2006 Jan 10. No abstract available.

PMID:
16376050
29.

Elevated cytokine levels in children with autism spectrum disorder.

Molloy CA, Morrow AL, Meinzen-Derr J, Schleifer K, Dienger K, Manning-Courtney P, Altaye M, Wills-Karp M.

J Neuroimmunol. 2006 Mar;172(1-2):198-205. Epub 2005 Dec 19.

PMID:
16360218
30.

CD4+CD25+ T cells protect against experimentally induced asthma and alter pulmonary dendritic cell phenotype and function.

Lewkowich IP, Herman NS, Schleifer KW, Dance MP, Chen BL, Dienger KM, Sproles AA, Shah JS, Köhl J, Belkaid Y, Wills-Karp M.

J Exp Med. 2005 Dec 5;202(11):1549-61. Epub 2005 Nov 28.

31.

Development and application of oligonucleotide probes for in situ detection of thermotolerant Campylobacter in chicken faecal and liver samples.

Schmid MW, Lehner A, Stephan R, Schleifer KH, Meier H.

Int J Food Microbiol. 2005 Nov 25;105(2):245-55. Epub 2005 Aug 2.

PMID:
16061298
32.

Enterobacter hormaechei subsp. oharae subsp. nov., E. hormaechei subsp. hormaechei comb. nov., and E. hormaechei subsp. steigerwaltii subsp. nov., three new subspecies of clinical importance.

Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, Monget D, Pierard D, Ziesing S, Heesemann J, Roggenkamp A, Schleifer KH.

J Clin Microbiol. 2005 Jul;43(7):3297-303.

33.

Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance.

Hoffmann H, Stindl S, Stumpf A, Mehlen A, Monget D, Heesemann J, Schleifer KH, Roggenkamp A.

Syst Appl Microbiol. 2005 Apr;28(3):206-12.

PMID:
15900967
34.

Reassignment of enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov. and emended description of Enterobacter asburiae and Enterobacter kobei.

Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, Heesemann J, Monget D, Schleifer KH, Roggenkamp A.

Syst Appl Microbiol. 2005 Apr;28(3):196-205.

PMID:
15900966
35.

Oligonucleotide microarray for identification of Enterococcus species.

Lehner A, Loy A, Behr T, Gaenge H, Ludwig W, Wagner M, Schleifer KH.

FEMS Microbiol Lett. 2005 May 1;246(1):133-42.

36.

Suppressive effect of IL-4 on IL-13-induced genes in mouse lung.

Finkelman FD, Yang M, Perkins C, Schleifer K, Sproles A, Santeliz J, Bernstein JA, Rothenberg ME, Morris SC, Wills-Karp M.

J Immunol. 2005 Apr 15;174(8):4630-8.

37.

Jannaschia rubra sp. nov., a red-pigmented bacterium isolated from sea water.

Macián MC, Arahal DR, Garay E, Ludwig W, Schleifer KH, Pujalte MJ.

Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):649-53.

PMID:
15774638
38.

Nereida ignava gen. nov., sp. nov., a novel aerobic marine alpha-proteobacterium that is closely related to uncultured Prionitis (alga) gall symbionts.

Pujalte MJ, Macián MC, Arahal DR, Ludwig W, Schleifer KH, Garay E.

Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):631-6.

PMID:
15774635
39.

Evolutionary history of the genus Listeria and its virulence genes.

Schmid MW, Ng EY, Lampidis R, Emmerth M, Walcher M, Kreft J, Goebel W, Wagner M, Schleifer KH.

Syst Appl Microbiol. 2005 Jan;28(1):1-18.

PMID:
15709360
40.

Altered gene expression profiles in nasal respiratory epithelium reflect stable versus acute childhood asthma.

Guajardo JR, Schleifer KW, Daines MO, Ruddy RM, Aronow BJ, Wills-Karp M, Hershey GK.

J Allergy Clin Immunol. 2005 Feb;115(2):243-51.

PMID:
15696077
41.

Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine alpha-proteobacterium isolated from Mediterranean sea water.

Macián MC, Arahal DR, Garay E, Ludwig W, Schleifer KH, Pujalte MJ.

Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):105-10.

PMID:
15653862
42.

Development of a fast DNA-DNA hybridization method based on melting profiles in microplates.

Mehlen A, Goeldner M, Ried S, Stindl S, Ludwig W, Schleifer KH.

Syst Appl Microbiol. 2004 Nov;27(6):689-95.

PMID:
15612626
43.

Emended description of the species Lampropedia hyalina.

Lee N, Cellamare CM, Bastianutti C, Rosselló-Mora R, Kämpfer P, Ludwig W, Schleifer KH, Stante L.

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1709-15.

PMID:
15388733
45.

Microbial diversity: facts, problems and prospects.

Schleifer KH.

Syst Appl Microbiol. 2004 Feb;27(1):3-9. Review. No abstract available.

PMID:
15053315
46.

ARB: a software environment for sequence data.

Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüssmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH.

Nucleic Acids Res. 2004 Feb 25;32(4):1363-71. Print 2004.

47.

Improved method for polynucleotide probe-based cell sorting, using DNA-coated microplates.

Zwirglmaier K, Ludwig W, Schleifer KH.

Appl Environ Microbiol. 2004 Jan;70(1):494-7.

48.
49.

Enterococci in foods--a conundrum for food safety.

Franz CM, Stiles ME, Schleifer KH, Holzapfel WH.

Int J Food Microbiol. 2003 Dec 1;88(2-3):105-22. Review.

PMID:
14596984
50.

Improved fluorescence in situ hybridization of individual microbial cells using polynucleotide probes: the network hypothesis.

Zwirglmaier K, Ludwig W, Schleifer KH.

Syst Appl Microbiol. 2003 Sep;26(3):327-37.

PMID:
14529175

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