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Best matches for Schlötterer C[au]:

Sequencing pools of individuals - mining genome-wide polymorphism data without big funding. Schlötterer C et al. Nat Rev Genet. (2014)

Reconstruction of Haplotype-Blocks Selected during Experimental Evolution. Franssen SU et al. Mol Biol Evol. (2017)

Quantifying Selection with Pool-Seq Time Series Data. Taus T et al. Mol Biol Evol. (2017)

Search results

Items: 1 to 50 of 207

1.

Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies.

Vlachos C, Burny C, Pelizzola M, Borges R, Futschik A, Kofler R, Schlötterer C.

Genome Biol. 2019 Aug 15;20(1):169. doi: 10.1186/s13059-019-1770-8.

2.

The horse Y chromosome as an informative marker for tracing sire lines.

Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O, Fries R, Jagannathan V, Janečka JE, Leeb T, Lindgren G, McCue M, Metzger J, Neuditschko M, Rattei T, Raudsepp T, Rieder S, Rubin CJ, Schaefer R, Schlötterer C, Thaller G, Tetens J, Velie B, Brem G, Wallner B.

Sci Rep. 2019 Apr 15;9(1):6095. doi: 10.1038/s41598-019-42640-w.

3.

DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species.

Howie JM, Mazzucco R, Taus T, Nolte V, Schlötterer C.

Genome Biol Evol. 2019 Apr 1;11(4):1345-1357. doi: 10.1093/gbe/evz082.

4.
5.

Genetic redundancy fuels polygenic adaptation in Drosophila.

Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R, Schlötterer C.

PLoS Biol. 2019 Feb 4;17(2):e3000128. doi: 10.1371/journal.pbio.3000128. eCollection 2019 Feb.

6.

A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment.

Hsu SK, Jakšić AM, Nolte V, Barghi N, Mallard F, Otte KA, Schlötterer C.

Genes (Basel). 2019 Jan 28;10(2). pii: E89. doi: 10.3390/genes10020089.

7.

Evolution of longevity improves immunity in Drosophila.

Fabian DK, Garschall K, Klepsatel P, Santos-Matos G, Sucena É, Kapun M, Lemaitre B, Schlötterer C, Arking R, Flatt T.

Evol Lett. 2018 Nov 12;2(6):567-579. doi: 10.1002/evl3.89. eCollection 2018 Dec.

8.

A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila.

Mallard F, Nolte V, Tobler R, Kapun M, Schlötterer C.

Genome Biol. 2018 Aug 20;19(1):119. doi: 10.1186/s13059-018-1503-4.

9.

Pleiotropic effects of regulatory variation in tan result in correlation of two pigmentation traits in Drosophila melanogaster.

Endler L, Gibert JM, Nolte V, Schlötterer C.

Mol Ecol. 2018 Jun 29. doi: 10.1111/mec.14781. [Epub ahead of print]

10.

Readapting to DCV Infection without Wolbachia: Frequency Changes of Drosophila Antiviral Alleles Can Replace Endosymbiont Protection.

Faria VG, Martins NE, Schlötterer C, Sucena É.

Genome Biol Evol. 2018 Jul 1;10(7):1783-1791. doi: 10.1093/gbe/evy137.

11.

Molecular dissection of a natural transposable element invasion.

Kofler R, Senti KA, Nolte V, Tobler R, Schlötterer C.

Genome Res. 2018 Jun;28(6):824-835. doi: 10.1101/gr.228627.117. Epub 2018 Apr 30.

12.

Redefining reproductive dormancy in Drosophila as a general stress response to cold temperatures.

Lirakis M, Dolezal M, Schlötterer C.

J Insect Physiol. 2018 May - Jun;107:175-185. doi: 10.1016/j.jinsphys.2018.04.006. Epub 2018 Apr 9.

13.

Contesting the evidence for non-adaptive plasticity.

Mallard F, Jakšić AM, Schlötterer C.

Nature. 2018 Mar 28;555(7698):E21-E22. doi: 10.1038/nature25496. No abstract available.

PMID:
29595765
14.

High-throughput fecundity measurements in Drosophila.

Nouhaud P, Mallard F, Poupardin R, Barghi N, Schlötterer C.

Sci Rep. 2018 Mar 13;8(1):4469. doi: 10.1038/s41598-018-22777-w.

15.

Asian horses deepen the MSY phylogeny.

Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R, Neuditschko M, Rieder S, Velie B, Lindgren G, Rubin CJ, Schlötterer C, Rattei T, Brem G, Wallner B.

Anim Genet. 2018 Feb;49(1):90-93. doi: 10.1111/age.12635. Epub 2018 Jan 15.

PMID:
29333704
16.

ReadTools: A universal toolkit for handling sequence data from different sequencing platforms.

Gómez-Sánchez D, Schlötterer C.

Mol Ecol Resour. 2018 May;18(3):676-680. doi: 10.1111/1755-0998.12741. Epub 2017 Dec 8.

PMID:
29171165
17.

High rate of translocation-based gene birth on the Drosophila Y chromosome.

Tobler R, Nolte V, Schlötterer C.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11721-11726. doi: 10.1073/pnas.1706502114. Epub 2017 Oct 19.

18.

Quantifying Selection with Pool-Seq Time Series Data.

Taus T, Futschik A, Schlötterer C.

Mol Biol Evol. 2017 Nov 1;34(11):3023-3034. doi: 10.1093/molbev/msx225.

19.

Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance.

Schou MF, Loeschcke V, Bechsgaard J, Schlötterer C, Kristensen TN.

Mol Ecol. 2017 Dec;26(23):6510-6523. doi: 10.1111/mec.14262. Epub 2017 Sep 5.

PMID:
28746770
20.

Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster.

Jakšić AM, Kofler R, Schlötterer C.

Mol Ecol. 2017 Oct;26(19):5149-5159. doi: 10.1111/mec.14259. Epub 2017 Aug 16.

PMID:
28742942
21.

Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results.

Gibert JM, Blanco J, Dolezal M, Nolte V, Peronnet F, Schlötterer C.

Genome Biol. 2017 Jul 3;18(1):126. doi: 10.1186/s13059-017-1262-7.

22.

Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions.

Wallner B, Palmieri N, Vogl C, Rigler D, Bozlak E, Druml T, Jagannathan V, Leeb T, Fries R, Tetens J, Thaller G, Metzger J, Distl O, Lindgren G, Rubin CJ, Andersson L, Schaefer R, McCue M, Neuditschko M, Rieder S, Schlötterer C, Brem G.

Curr Biol. 2017 Jul 10;27(13):2029-2035.e5. doi: 10.1016/j.cub.2017.05.086. Epub 2017 Jun 29.

23.

Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies.

Barghi N, Tobler R, Nolte V, Schlötterer C.

G3 (Bethesda). 2017 Jul 5;7(7):2337-2343. doi: 10.1534/g3.117.043349.

24.

Clear: Composition of Likelihoods for Evolve and Resequence Experiments.

Iranmehr A, Akbari A, Schlötterer C, Bafna V.

Genetics. 2017 Jun;206(2):1011-1023. doi: 10.1534/genetics.116.197566. Epub 2017 Apr 10.

25.

Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations.

Otte KA, Schlötterer C.

Mol Ecol Resour. 2017 Nov;17(6):1148-1155. doi: 10.1111/1755-0998.12656. Epub 2017 Mar 30.

PMID:
28130873
26.

Ancestral population reconstitution from isofemale lines as a tool for experimental evolution.

Nouhaud P, Tobler R, Nolte V, Schlötterer C.

Ecol Evol. 2016 Aug 30;6(20):7169-7175. eCollection 2016 Oct.

27.

Uncovering the genetic signature of quantitative trait evolution with replicated time series data.

Franssen SU, Kofler R, Schlötterer C.

Heredity (Edinb). 2017 Jan;118(1):42-51. doi: 10.1038/hdy.2016.98. Epub 2016 Nov 16.

28.

Reconstruction of Haplotype-Blocks Selected during Experimental Evolution.

Franssen SU, Barton NH, Schlötterer C.

Mol Biol Evol. 2017 Jan;34(1):174-184. doi: 10.1093/molbev/msw210. Epub 2016 Oct 3.

PMID:
27702776
29.

Drosophila Adaptation to Viral Infection through Defensive Symbiont Evolution.

Faria VG, Martins NE, Magalhães S, Paulo TF, Nolte V, Schlötterer C, Sucena É, Teixeira L.

PLoS Genet. 2016 Sep 29;12(9):e1006297. doi: 10.1371/journal.pgen.1006297. eCollection 2016 Sep.

30.

Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data.

Kofler R, Langmüller AM, Nouhaud P, Otte KA, Schlötterer C.

G3 (Bethesda). 2016 Nov 8;6(11):3507-3515. doi: 10.1534/g3.116.034488.

31.

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution.

Jónás Á, Taus T, Kosiol C, Schlötterer C, Futschik A.

Genetics. 2016 Oct;204(2):723-735. Epub 2016 Aug 19.

32.

PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq.

Kofler R, Gómez-Sánchez D, Schlötterer C.

Mol Biol Evol. 2016 Oct;33(10):2759-64. doi: 10.1093/molbev/msw137. Epub 2016 Aug 2.

33.

The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster.

Jakšić AM, Schlötterer C.

Genetics. 2016 Sep;204(1):315-25. doi: 10.1534/genetics.116.192310. Epub 2016 Jul 20.

34.

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krämer U, Koch MA, Nordborg M.

Nat Genet. 2016 Sep;48(9):1077-82. doi: 10.1038/ng.3617. Epub 2016 Jul 18.

35.

Correction: Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element.

Hill T, Schlötterer C, Betancourt AJ.

PLoS Genet. 2016 May 11;12(5):e1006058. doi: 10.1371/journal.pgen.1006058. eCollection 2016 May.

36.

Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element.

Hill T, Schlötterer C, Betancourt AJ.

PLoS Genet. 2016 Mar 16;12(3):e1005920. doi: 10.1371/journal.pgen.1005920. eCollection 2016 Mar. Erratum in: PLoS Genet. 2016 May;12(5):e1006058.

37.

High rates of phasing errors in highly polymorphic species with low levels of linkage disequilibrium.

Bukowicki M, Franssen SU, Schlötterer C.

Mol Ecol Resour. 2016 Jul;16(4):874-82. doi: 10.1111/1755-0998.12516. Epub 2016 Mar 21.

38.

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation.

Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU.

Heredity (Edinb). 2016 Feb;116(2):248. doi: 10.1038/hdy.2015.85. No abstract available.

39.

Reconciling Differences in Pool-GWAS Between Populations: A Case Study of Female Abdominal Pigmentation in Drosophila melanogaster.

Endler L, Betancourt AJ, Nolte V, Schlötterer C.

Genetics. 2016 Feb;202(2):843-55. doi: 10.1534/genetics.115.183376. Epub 2015 Dec 29.

40.

Tempo and Mode of Transposable Element Activity in Drosophila.

Kofler R, Nolte V, Schlötterer C.

PLoS Genet. 2015 Jul 17;11(7):e1005406. doi: 10.1371/journal.pgen.1005406. eCollection 2015 Jul.

41.

Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations.

Tobler R, Hermisson J, Schlötterer C.

Evolution. 2015 Jul;69(7):1745-59. doi: 10.1111/evo.12705. Epub 2015 Jul 14.

42.

The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data.

Kofler R, Nolte V, Schlötterer C.

Mol Ecol Resour. 2016 Jan;16(1):118-22. doi: 10.1111/1755-0998.12432. Epub 2015 Jun 9.

43.

Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications.

Chen J, Nolte V, Schlötterer C.

Mol Biol Evol. 2015 Sep;32(9):2393-402. doi: 10.1093/molbev/msv120. Epub 2015 May 14.

44.

The recent invasion of natural Drosophila simulans populations by the P-element.

Kofler R, Hill T, Nolte V, Betancourt AJ, Schlötterer C.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6659-63. doi: 10.1073/pnas.1500758112. Epub 2015 May 11.

45.

Multi-locus analysis of genomic time series data from experimental evolution.

Terhorst J, Schlötterer C, Song YS.

PLoS Genet. 2015 Apr 7;11(4):e1005069. doi: 10.1371/journal.pgen.1005069. eCollection 2015 Apr.

46.

Genetic architecture and functional characterization of genes underlying the rapid diversification of male external genitalia between Drosophila simulans and Drosophila mauritiana.

Tanaka KM, Hopfen C, Herbert MR, Schlötterer C, Stern DL, Masly JP, McGregor AP, Nunes MD.

Genetics. 2015 May;200(1):357-69. doi: 10.1534/genetics.114.174045. Epub 2015 Mar 16.

47.

Genes from scratch--the evolutionary fate of de novo genes.

Schlötterer C.

Trends Genet. 2015 Apr;31(4):215-9. doi: 10.1016/j.tig.2015.02.007. Epub 2015 Mar 12. Review.

48.

Temperature stress mediates decanalization and dominance of gene expression in Drosophila melanogaster.

Chen J, Nolte V, Schlötterer C.

PLoS Genet. 2015 Feb 26;11(2):e1004883. doi: 10.1371/journal.pgen.1004883. eCollection 2015. Erratum in: PLoS Genet. 2015 Jun;11(6):e1005315. PLoS Genet. 2016 May;12(5):e1006079.

49.

Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa.

Fabian DK, Lack JB, Mathur V, Schlötterer C, Schmidt PS, Pool JE, Flatt T.

J Evol Biol. 2015 Apr;28(4):826-40. doi: 10.1111/jeb.12607. Epub 2015 Mar 13.

50.

Genomic resources notes accepted 1 August 2014-30 September 2014.

Genomic Resources Development Consortium, Arthofer W, Banbury BL, Carneiro M, Cicconardi F, Duda TF, Harris RB, Kang DS, Leaché AD, Nolte V, Nourisson C, Palmieri N, Schlick-Steiner BC, Schlötterer C, Sequeira F, Sim C, Steiner FM, Vallinoto M, Weese DA.

Mol Ecol Resour. 2015 Jan;15(1):228-9. doi: 10.1111/1755-0998.12340. Epub 2014 Nov 25.

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