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Items: 36

1.

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.

Pinu FR, Beale DJ, Paten AM, Kouremenos K, Swarup S, Schirra HJ, Wishart D.

Metabolites. 2019 Apr 18;9(4). pii: E76. doi: 10.3390/metabo9040076.

2.

Metabolic analyses reveal common adaptations in two invasive Haemophilus influenzae strains.

Muda NM, Nasreen M, Dhouib R, Hosmer J, Hill J, Mahawar M, Schirra HJ, McEwan AG, Kappler U.

Pathog Dis. 2019 Mar 1;77(2). pii: ftz015. doi: 10.1093/femspd/ftz015.

PMID:
30915434
3.

Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans.

Witting M, Hastings J, Rodriguez N, Joshi CJ, Hattwell JPN, Ebert PR, van Weeghel M, Gao AW, Wakelam MJO, Houtkooper RH, Mains A, Le Novère N, Sadykoff S, Schroeder F, Lewis NE, Schirra HJ, Kaleta C, Casanueva O.

Front Mol Biosci. 2018 Nov 14;5:96. doi: 10.3389/fmolb.2018.00096. eCollection 2018.

4.

3-NOP vs. Halogenated Compound: Methane Production, Ruminal Fermentation and Microbial Community Response in Forage Fed Cattle.

Martinez-Fernandez G, Duval S, Kindermann M, Schirra HJ, Denman SE, McSweeney CS.

Front Microbiol. 2018 Aug 7;9:1582. doi: 10.3389/fmicb.2018.01582. eCollection 2018.

5.

Seminal plasma enables selection and monitoring of active surveillance candidates using nuclear magnetic resonance-based metabolomics: A preliminary investigation.

Roberts MJ, Richards RS, Chow CWK, Buck M, Yaxley J, Lavin MF, Schirra HJ, Gardiner RA.

Prostate Int. 2017 Dec;5(4):149-157. doi: 10.1016/j.prnil.2017.03.005. Epub 2017 Mar 23.

6.

NMR-Based Metabolomics of Oral Biofluids.

Schirra HJ, Ford PJ.

Methods Mol Biol. 2017;1537:79-105.

PMID:
27924589
7.

Prostate-based biofluids for the detection of prostate cancer: A comparative study of the diagnostic performance of cell-sourced RNA biomarkers.

Roberts MJ, Richards RS, Chow CW, Doi SA, Schirra HJ, Buck M, Samaratunga H, Perry-Keene J, Payton D, Yaxley J, Lavin MF, Gardiner RA.

Prostate Int. 2016 Sep;4(3):97-102. doi: 10.1016/j.prnil.2016.04.002. Epub 2016 May 5.

8.

Can atorvastatin with metformin change the natural history of prostate cancer as characterized by molecular, metabolomic, imaging and pathological variables? A randomized controlled trial protocol.

Roberts MJ, Yaxley JW, Coughlin GD, Gianduzzo TR, Esler RC, Dunglison NT, Chambers SK, Medcraft RJ, Chow CW, Schirra HJ, Richards RS, Kienzle N, Lu M, Brereton I, Samaratunga H, Perry-Keene J, Payton D, Oyama C, Doi SA, Lavin MF, Gardiner RA.

Contemp Clin Trials. 2016 Sep;50:16-20. doi: 10.1016/j.cct.2016.06.014. Epub 2016 Jun 28.

PMID:
27370230
9.

Diagnostic performance of expression of PCA3, Hepsin and miR biomarkers inejaculate in combination with serum PSA for the detection of prostate cancer.

Roberts MJ, Chow CW, Schirra HJ, Richards R, Buck M, Selth LA, Doi SA, Samaratunga H, Perry-Keene J, Payton D, Yaxley J, Lavin MF, Gardiner RA.

Prostate. 2015 Apr 1;75(5):539-49. doi: 10.1002/pros.22942. Epub 2015 Jan 18.

PMID:
25597828
10.

Impacts of the Callipyge mutation on ovine plasma metabolites and muscle fibre type.

Li J, Greenwood PL, Cockett NE, Hadfield TS, Vuocolo T, Byrne K, White JD, Tellam RL, Schirra HJ.

PLoS One. 2014 Jun 17;9(6):e99726. doi: 10.1371/journal.pone.0099726. eCollection 2014.

11.

A radish seed antifungal peptide with a high amyloid fibril-forming propensity.

Garvey M, Meehan S, Gras SL, Schirra HJ, Craik DJ, Van der Weerden NL, Anderson MA, Gerrard JA, Carver JA.

Biochim Biophys Acta. 2013 Aug;1834(8):1615-23. doi: 10.1016/j.bbapap.2013.04.030. Epub 2013 May 9.

PMID:
23665069
12.

Comparative Genomics of Serial Isolates of Cryptococcus neoformans Reveals Gene Associated With Carbon Utilization and Virulence.

Ormerod KL, Morrow CA, Chow EW, Lee IR, Arras SD, Schirra HJ, Cox GM, Fries BC, Fraser JA.

G3 (Bethesda). 2013 Apr 9;3(4):675-686. doi: 10.1534/g3.113.005660.

13.

Urine metabonomic profiling of a female adolescent with PIT-1 mutation before and during growth hormone therapy: insights into the metabolic effects of growth hormone.

Abd Rahman S, Schirra HJ, Lichanska AM, Huynh T, Leong GM.

Growth Horm IGF Res. 2013 Feb-Apr;23(1-2):29-36. doi: 10.1016/j.ghir.2012.12.001. Epub 2013 Feb 4.

PMID:
23380306
14.

A core metabolic enzyme mediates resistance to phosphine gas.

Schlipalius DI, Valmas N, Tuck AG, Jagadeesan R, Ma L, Kaur R, Goldinger A, Anderson C, Kuang J, Zuryn S, Mau YS, Cheng Q, Collins PJ, Nayak MK, Schirra HJ, Hilliard MA, Ebert PR.

Science. 2012 Nov 9;338(6108):807-10. doi: 10.1126/science.1224951.

PMID:
23139334
15.

Performance evaluation of algorithms for the classification of metabolic 1H NMR fingerprints.

Hochrein J, Klein MS, Zacharias HU, Li J, Wijffels G, Schirra HJ, Spang R, Oefner PJ, Gronwald W.

J Proteome Res. 2012 Dec 7;11(12):6242-51. doi: 10.1021/pr3009034. Epub 2012 Nov 12.

PMID:
23116257
16.

Investigating potential mechanisms of obesity by metabolomics.

Xie B, Waters MJ, Schirra HJ.

J Biomed Biotechnol. 2012;2012:805683. doi: 10.1155/2012/805683. Epub 2012 May 16. Review.

17.

Identification of crotonyl glycine in urine of sheep after 48 h road transport.

Li J, Schirra HJ, Yu Y, Colgrave ML, Stoermer MJ, Wijffels G.

J Pharm Biomed Anal. 2012 Aug-Sep;67-68:129-36. doi: 10.1016/j.jpba.2012.04.028. Epub 2012 Apr 25.

PMID:
22591806
18.

A unique chromosomal rearrangement in the Cryptococcus neoformans var. grubii type strain enhances key phenotypes associated with virulence.

Morrow CA, Lee IR, Chow EW, Ormerod KL, Goldinger A, Byrnes EJ 3rd, Nielsen K, Heitman J, Schirra HJ, Fraser JA.

MBio. 2012 Feb 28;3(2). pii: e00310-11. doi: 10.1128/mBio.00310-11. Print 2012.

19.

Metabolomics: a novel approach to early and noninvasive prostate cancer detection.

Roberts MJ, Schirra HJ, Lavin MF, Gardiner RA.

Korean J Urol. 2011 Feb;52(2):79-89. doi: 10.4111/kju.2011.52.2.79. Epub 2011 Feb 19.

20.

Altered fatty acid metabolism in long duration road transport: An NMR-based metabonomics study in sheep.

Li J, Wijffels G, Yu Y, Nielsen LK, Niemeyer DO, Fisher AD, Ferguson DM, Schirra HJ.

J Proteome Res. 2011 Mar 4;10(3):1073-87. doi: 10.1021/pr100862t. Epub 2011 Jan 31.

PMID:
21142080
21.

Markers for detection of prostate cancer.

Clarke RA, Schirra HJ, Catto JW, Lavin MF, Gardiner RA.

Cancers (Basel). 2010 Jun 4;2(2):1125-54. doi: 10.3390/cancers2021125.

22.

Selective removal of individual disulfide bonds within a potato type II serine proteinase inhibitor from Nicotiana alata reveals differential stabilization of the reactive-site loop.

Schirra HJ, Guarino RF, Anderson MA, Craik DJ.

J Mol Biol. 2010 Jan 22;395(3):609-26. doi: 10.1016/j.jmb.2009.11.031. Epub 2009 Nov 17.

PMID:
19925809
23.

NMRDyn: a program for NMR relaxation studies of protein association.

Wang CK, Schirra HJ, Craik DJ.

PLoS One. 2008;3(11):e3820. doi: 10.1371/journal.pone.0003820. Epub 2008 Nov 26.

24.

Structural refinement of insecticidal plant proteinase inhibitors from Nicotiana alata.

Schirra HJ, Anderson MA, Craik DJ.

Protein Pept Lett. 2008;15(9):903-9.

PMID:
18991765
25.

Altered metabolism of growth hormone receptor mutant mice: a combined NMR metabonomics and microarray study.

Schirra HJ, Anderson CG, Wilson WJ, Kerr L, Craik DJ, Waters MJ, Lichanska AM.

PLoS One. 2008 Jul 23;3(7):e2764. doi: 10.1371/journal.pone.0002764.

26.

Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity.

Wang CI, Guncar G, Forwood JK, Teh T, Catanzariti AM, Lawrence GJ, Loughlin FE, Mackay JP, Schirra HJ, Anderson PA, Ellis JG, Dodds PN, Kobe B.

Plant Cell. 2007 Sep;19(9):2898-912. Epub 2007 Sep 14.

27.
28.

Sunflower trypsin inhibitor-1.

Korsinczky ML, Schirra HJ, Craik DJ.

Curr Protein Pept Sci. 2004 Oct;5(5):351-64. Review.

PMID:
15544530
29.

Crystal structures of the DsbG disulfide isomerase reveal an unstable disulfide.

Heras B, Edeling MA, Schirra HJ, Raina S, Martin JL.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8876-81. Epub 2004 Jun 7.

30.

Structure of Petunia hybrida defensin 1, a novel plant defensin with five disulfide bonds.

Janssen BJ, Schirra HJ, Lay FT, Anderson MA, Craik DJ.

Biochemistry. 2003 Jul 15;42(27):8214-22.

PMID:
12846570
31.

Enzymatic cyclization of a potent bowman-birk protease inhibitor, sunflower trypsin inhibitor-1, and solution structure of an acyclic precursor peptide.

Marx UC, Korsinczky ML, Schirra HJ, Jones A, Condie B, Otvos L Jr, Craik DJ.

J Biol Chem. 2003 Jun 13;278(24):21782-9. Epub 2003 Mar 5.

32.
33.

Solution structures by 1H NMR of the novel cyclic trypsin inhibitor SFTI-1 from sunflower seeds and an acyclic permutant.

Korsinczky ML, Schirra HJ, Rosengren KJ, West J, Condie BA, Otvos L, Anderson MA, Craik DJ.

J Mol Biol. 2001 Aug 17;311(3):579-91.

PMID:
11493011
34.

Three-dimensional structure of RTD-1, a cyclic antimicrobial defensin from Rhesus macaque leukocytes.

Trabi M, Schirra HJ, Craik DJ.

Biochemistry. 2001 Apr 10;40(14):4211-21.

PMID:
11284676
35.

The solution structure of C1-T1, a two-domain proteinase inhibitor derived from a circular precursor protein from Nicotiana alata.

Schirra HJ, Scanlon MJ, Lee MC, Anderson MA, Craik DJ.

J Mol Biol. 2001 Feb 9;306(1):69-79.

PMID:
11178894
36.

Structure of reduced DsbA from Escherichia coli in solution.

Schirra HJ, Renner C, Czisch M, Huber-Wunderlich M, Holak TA, Glockshuber R.

Biochemistry. 1998 May 5;37(18):6263-76.

PMID:
9572841

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