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Items: 14

1.

WormBase 2017: molting into a new stage.

Lee RYN, Howe KL, Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Davis P, Gao S, Grove C, Kishore R, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers F, Russell M, Schindelman G, Tuli MA, Van Auken K, Wang Q, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2018 Jan 4;46(D1):D869-D874. doi: 10.1093/nar/gkx998.

2.

WormBase 2016: expanding to enable helminth genomic research.

Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217. Epub 2015 Nov 17.

3.

WormBase 2014: new views of curated biology.

Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Ozersky P, Paulini M, Raciti D, Schindelman G, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wong JD, Yook K, Schedl T, Hodgkin J, Berriman M, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93. doi: 10.1093/nar/gkt1063. Epub 2013 Nov 4.

4.

Automatic categorization of diverse experimental information in the bioscience literature.

Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, Wang X, Davis P, Tuli MA, Marygold SJ, Millburn G, Matthews B, Zhang H, Brown N, Gelbart WM, Sternberg PW.

BMC Bioinformatics. 2012 Jan 26;13:16. doi: 10.1186/1471-2105-13-16.

5.

WormBase 2012: more genomes, more data, new website.

Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Nash B, Ozersky P, Paulini M, Raciti D, Rangarajan A, Schindelman G, Shi X, Schwarz EM, Ann Tuli M, Van Auken K, Wang D, Wang X, Williams G, Hodgkin J, Berriman M, Durbin R, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D735-41. doi: 10.1093/nar/gkr954. Epub 2011 Nov 8.

6.

Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community.

Schindelman G, Fernandes JS, Bastiani CA, Yook K, Sternberg PW.

BMC Bioinformatics. 2011 Jan 24;12:32. doi: 10.1186/1471-2105-12-32.

7.

WormBase: a comprehensive resource for nematode research.

Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D463-7. doi: 10.1093/nar/gkp952. Epub 2009 Nov 12.

8.

WormBase 2007.

Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7. Epub 2007 Nov 8.

9.

Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics.

Karbowski J, Schindelman G, Cronin CJ, Seah A, Sternberg PW.

J Comput Neurosci. 2008 Jun;24(3):253-76. Epub 2007 Sep 1.

PMID:
17768672
10.

WormBase: new content and better access.

Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D506-10. Epub 2006 Nov 11.

11.

Initiation of male sperm-transfer behavior in Caenorhabditis elegans requires input from the ventral nerve cord.

Schindelman G, Whittaker AJ, Thum JY, Gharib S, Sternberg PW.

BMC Biol. 2006 Aug 15;4:26.

12.

COBRA, an Arabidopsis extracellular glycosyl-phosphatidyl inositol-anchored protein, specifically controls highly anisotropic expansion through its involvement in cellulose microfibril orientation.

Roudier F, Fernandez AG, Fujita M, Himmelspach R, Borner GH, Schindelman G, Song S, Baskin TI, Dupree P, Wasteneys GO, Benfey PN.

Plant Cell. 2005 Jun;17(6):1749-63. Epub 2005 Apr 22.

13.

The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion.

Roudier F, Schindelman G, DeSalle R, Benfey PN.

Plant Physiol. 2002 Oct;130(2):538-48.

14.

COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis.

Schindelman G, Morikami A, Jung J, Baskin TI, Carpita NC, Derbyshire P, McCann MC, Benfey PN.

Genes Dev. 2001 May 1;15(9):1115-27.

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