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Items: 25

1.

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.

Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S, Bui O, Schilling CH, Lovley DR, Methé BA.

BMC Genomics. 2009 Sep 22;10:447. doi: 10.1186/1471-2164-10-447.

2.

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.

3.

Geobacter sulfurreducens strain engineered for increased rates of respiration.

Izallalen M, Mahadevan R, Burgard A, Postier B, Didonato R Jr, Sun J, Schilling CH, Lovley DR.

Metab Eng. 2008 Sep;10(5):267-75. doi: 10.1016/j.ymben.2008.06.005. Epub 2008 Jun 27.

PMID:
18644460
4.

Complexes of 3.6 kDa maltodextrin with some metals.

Tomasik P, Anderegg JW, Schilling CH.

Molecules. 2004 Jun 30;9(7):583-94.

5.

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R.

J Biol Chem. 2007 Sep 28;282(39):28791-9. Epub 2007 Jun 15.

6.

Bringing metabolomics data into the forefront of systems biology.

Van Dien S, Schilling CH.

Mol Syst Biol. 2006;2:2006.0035. Epub 2006 Jun 20. No abstract available.

7.

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.

Appl Environ Microbiol. 2006 Feb;72(2):1558-68.

8.

Nitrogen fluxes on catchment scale: the influence of hydrological aspects.

Zessner M, Schilling Ch, Gabriel O, Heinecke U.

Water Sci Technol. 2005;52(9):163-73.

PMID:
16445185
9.

Use of constraint-based modeling for the prediction and validation of antimicrobial targets.

Trawick JD, Schilling CH.

Biochem Pharmacol. 2006 Mar 30;71(7):1026-35. Epub 2005 Dec 2. Review.

PMID:
16329998
10.

Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr, and HprK.

Lorca GL, Chung YJ, Barabote RD, Weyler W, Schilling CH, Saier MH Jr.

J Bacteriol. 2005 Nov;187(22):7826-39.

11.

Chemical modification of starch.

Tomasik P, Schilling CH.

Adv Carbohydr Chem Biochem. 2004;59:175-403. Review. No abstract available.

PMID:
15607766
12.

Flux coupling analysis of genome-scale metabolic network reconstructions.

Burgard AP, Nikolaev EV, Schilling CH, Maranas CD.

Genome Res. 2004 Feb;14(2):301-12. Epub 2004 Jan 12.

13.

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models.

Mahadevan R, Schilling CH.

Metab Eng. 2003 Oct;5(4):264-76.

PMID:
14642354
14.

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).

Reed JL, Vo TD, Schilling CH, Palsson BO.

Genome Biol. 2003;4(9):R54. Epub 2003 Aug 28.

15.

Genome-scale microbial in silico models: the constraints-based approach.

Price ND, Papin JA, Schilling CH, Palsson BO.

Trends Biotechnol. 2003 Apr;21(4):162-9. Review.

PMID:
12679064
16.

Genome-scale metabolic model of Helicobacter pylori 26695.

Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, Palsson BO.

J Bacteriol. 2002 Aug;184(16):4582-93.

17.

Regulation of gene expression in flux balance models of metabolism.

Covert MW, Schilling CH, Palsson B.

J Theor Biol. 2001 Nov 7;213(1):73-88.

PMID:
11708855
18.

Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems.

Schilling CH, Edwards JS, Letscher D, Palsson BØ.

Biotechnol Bioeng. 2000-2001;71(4):286-306.

PMID:
11291038
19.

Metabolic modeling of microbial strains in silico.

Covert MW, Schilling CH, Famili I, Edwards JS, Goryanin II, Selkov E, Palsson BO.

Trends Biochem Sci. 2001 Mar;26(3):179-86. Review.

PMID:
11246024
20.

GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs.

Schilling CH, Held L, Torre M, Saier MH Jr.

J Mol Microbiol Biotechnol. 2000 Oct;2(4):495-500.

PMID:
11075923
21.
22.
23.

Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.

Schilling CH, Schuster S, Palsson BO, Heinrich R.

Biotechnol Prog. 1999 May-Jun;15(3):296-303. Review.

PMID:
10356246
24.

Toward metabolic phenomics: analysis of genomic data using flux balances.

Schilling CH, Edwards JS, Palsson BO.

Biotechnol Prog. 1999 May-Jun;15(3):288-95.

PMID:
10356245
25.

The underlying pathway structure of biochemical reaction networks.

Schilling CH, Palsson BO.

Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4193-8.

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