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Items: 1 to 50 of 140

1.

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis.

Chakrabortty B, Willemsen V, de Zeeuw T, Liao CY, Weijers D, Mulder B, Scheres B.

Curr Biol. 2018 Oct 8;28(19):3031-3043.e2. doi: 10.1016/j.cub.2018.07.025. Epub 2018 Sep 20.

2.

Root stem cell niche organizer specification by molecular convergence of PLETHORA and SCARECROW transcription factor modules.

Shimotohno A, Heidstra R, Blilou I, Scheres B.

Genes Dev. 2018 Aug 1;32(15-16):1085-1100. doi: 10.1101/gad.314096.118. Epub 2018 Jul 17.

3.

Optimizing FRET-FLIM Labeling Conditions to Detect Nuclear Protein Interactions at Native Expression Levels in Living Arabidopsis Roots.

Long Y, Stahl Y, Weidtkamp-Peters S, Smet W, Du Y, Gadella TWJ Jr, Goedhart J, Scheres B, Blilou I.

Front Plant Sci. 2018 May 15;9:639. doi: 10.3389/fpls.2018.00639. eCollection 2018.

4.

Mediator subunit MED31 is required for radial patterning of Arabidopsis roots.

Zhang X, Zhou W, Chen Q, Fang M, Zheng S, Scheres B, Li C.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5624-E5633. doi: 10.1073/pnas.1800592115. Epub 2018 May 29.

5.

Tuning Division and Differentiation in Stomata: How to Silence a MUTE.

Zamora-Zaragoza J, Scheres B.

Dev Cell. 2018 May 7;45(3):282-283. doi: 10.1016/j.devcel.2018.04.019.

PMID:
29738706
6.

A computational framework for cortical microtubule dynamics in realistically shaped plant cells.

Chakrabortty B, Blilou I, Scheres B, Mulder BM.

PLoS Comput Biol. 2018 Feb 2;14(2):e1005959. doi: 10.1371/journal.pcbi.1005959. eCollection 2018 Feb.

7.

Coordination of growth in root and shoot apices by AIL/PLT transcription factors.

Scheres B, Krizek BA.

Curr Opin Plant Biol. 2018 Feb;41:95-101. doi: 10.1016/j.pbi.2017.10.002. Epub 2017 Nov 6. Review.

8.

PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.

Du Y, Scheres B.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11709-11714. doi: 10.1073/pnas.1714410114. Epub 2017 Oct 16.

9.

Lateral root formation and the multiple roles of auxin.

Du Y, Scheres B.

J Exp Bot. 2018 Jan 4;69(2):155-167. doi: 10.1093/jxb/erx223.

PMID:
28992266
10.

In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.

Long Y, Stahl Y, Weidtkamp-Peters S, Postma M, Zhou W, Goedhart J, Sánchez-Pérez MI, Gadella TWJ, Simon R, Scheres B, Blilou I.

Nature. 2017 Aug 3;548(7665):97-102. doi: 10.1038/nature23317. Epub 2017 Jul 26.

PMID:
28746306
11.

Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.

Sheng L, Hu X, Du Y, Zhang G, Huang H, Scheres B, Xu L.

Development. 2017 Sep 1;144(17):3126-3133. doi: 10.1242/dev.152132. Epub 2017 Jul 25.

12.

XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.

Zhao C, Lasses T, Bako L, Kong D, Zhao B, Chanda B, Bombarely A, Cruz-Ramírez A, Scheres B, Brunner AM, Beers EP.

New Phytol. 2017 Oct;216(1):76-89. doi: 10.1111/nph.14704. Epub 2017 Jul 25.

13.

Analysis of a Plant Transcriptional Regulatory Network Using Transient Expression Systems.

Díaz-Triviño S, Long Y, Scheres B, Blilou I.

Methods Mol Biol. 2017;1629:83-103. doi: 10.1007/978-1-4939-7125-1_7.

PMID:
28623581
14.

Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control.

Horvath BM, Kourova H, Nagy S, Nemeth E, Magyar Z, Papdi C, Ahmad Z, Sanchez-Perez GF, Perilli S, Blilou I, Pettkó-Szandtner A, Darula Z, Meszaros T, Binarova P, Bogre L, Scheres B.

EMBO J. 2017 May 2;36(9):1261-1278. doi: 10.15252/embj.201694561. Epub 2017 Mar 20.

15.

The plant perceptron connects environment to development.

Scheres B, van der Putten WH.

Nature. 2017 Mar 15;543(7645):337-345. doi: 10.1038/nature22010. Review.

PMID:
28300110
16.

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.

Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R.

Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5.

17.

Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.

Porco S, Larrieu A, Du Y, Gaudinier A, Goh T, Swarup K, Swarup R, Kuempers B, Bishopp A, Lavenus J, Casimiro I, Hill K, Benkova E, Fukaki H, Brady SM, Scheres B, Péret B, Bennett MJ.

Development. 2016 Sep 15;143(18):3340-9. doi: 10.1242/dev.136283. Epub 2016 Aug 30.

18.

PPP1, a plant-specific regulator of transcription controls Arabidopsis development and PIN expression.

Benjamins R, Barbez E, Ortbauer M, Terpstra I, Lucyshyn D, Moulinier-Anzola J, Khan MA, Leitner J, Malenica N, Butt H, Korbei B, Scheres B, Kleine-Vehn J, Luschnig C.

Sci Rep. 2016 Aug 24;6:32196. doi: 10.1038/srep32196.

19.

Root patterning: it takes two to tangle.

Scheres B, Laskowski M.

J Exp Bot. 2016 Mar;67(5):1201-3. doi: 10.1093/jxb/erw049. No abstract available.

20.

MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants.

Siligato R, Wang X, Yadav SR, Lehesranta S, Ma G, Ursache R, Sevilem I, Zhang J, Gorte M, Prasad K, Wrzaczek M, Heidstra R, Murphy A, Scheres B, Mähönen AP.

Plant Physiol. 2016 Feb;170(2):627-41. doi: 10.1104/pp.15.01246. Epub 2015 Dec 7.

21.

Transcriptional control of tissue formation throughout root development.

Moreno-Risueno MA, Sozzani R, Yardımcı GG, Petricka JJ, Vernoux T, Blilou I, Alonso J, Winter CM, Ohler U, Scheres B, Benfey PN.

Science. 2015 Oct 23;350(6259):426-30. doi: 10.1126/science.aad1171.

22.

SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement.

Long Y, Goedhart J, Schneijderberg M, Terpstra I, Shimotohno A, Bouchet BP, Akhmanova A, Gadella TW Jr, Heidstra R, Scheres B, Blilou I.

Plant J. 2015 Nov;84(4):773-84. doi: 10.1111/tpj.13038.

23.

Root developmental programs shape the Medicago truncatula nodule meristem.

Franssen HJ, Xiao TT, Kulikova O, Wan X, Bisseling T, Scheres B, Heidstra R.

Development. 2015 Sep 1;142(17):2941-50. doi: 10.1242/dev.120774. Epub 2015 Aug 7.

24.

Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling.

Dhonukshe P, Huang F, Galvan-Ampudia CS, Mähönen AP, Kleine-Vehn J, Xu J, Quint A, Prasad K, Friml J, Scheres B, Offringa R.

Development. 2015 Jul 1;142(13):2386-7. doi: 10.1242/dev.127415. No abstract available.

25.

Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification.

Long Y, Smet W, Cruz-Ramírez A, Castelijns B, de Jonge W, Mähönen AP, Bouchet BP, Perez GS, Akhmanova A, Scheres B, Blilou I.

Plant Cell. 2015 Apr;27(4):1185-99. doi: 10.1105/tpc.114.132407. Epub 2015 Mar 31.

26.

PLETHORA Genes Control Regeneration by a Two-Step Mechanism.

Kareem A, Durgaprasad K, Sugimoto K, Du Y, Pulianmackal AJ, Trivedi ZB, Abhayadev PV, Pinon V, Meyerowitz EM, Scheres B, Prasad K.

Curr Biol. 2015 Apr 20;25(8):1017-30. doi: 10.1016/j.cub.2015.02.022. Epub 2015 Mar 26.

27.

The logic of communication: roles for mobile transcription factors in plants.

Long Y, Scheres B, Blilou I.

J Exp Bot. 2015 Feb;66(4):1133-44. doi: 10.1093/jxb/eru548. Epub 2015 Jan 29. Review.

PMID:
25635110
28.

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem.

Kinoshita A, ten Hove CA, Tabata R, Yamada M, Shimizu N, Ishida T, Yamaguchi K, Shigenobu S, Takebayashi Y, Iuchi S, Kobayashi M, Kurata T, Wada T, Seo M, Hasebe M, Blilou I, Fukuda H, Scheres B, Heidstra R, Kamiya Y, Sawa S.

Development. 2015 Feb 1;142(3):444-53. doi: 10.1242/dev.113167.

29.

Plant Science. Nutrient computation for root architecture.

Bisseling T, Scheres B.

Science. 2014 Oct 17;346(6207):300-1. doi: 10.1126/science.1260942. No abstract available.

PMID:
25324371
30.

Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.

Matos JL, Lau OS, Hachez C, Cruz-Ramírez A, Scheres B, Bergmann DC.

Elife. 2014 Oct 10;3. doi: 10.7554/eLife.03271.

31.

Precise control of plant stem cell activity through parallel regulatory inputs.

Bennett T, van den Toorn A, Willemsen V, Scheres B.

Development. 2014 Nov;141(21):4055-64. doi: 10.1242/dev.110148. Epub 2014 Sep 25.

32.

Ben Scheres.

Scheres B.

Curr Biol. 2014 Jul 21;24(14):R636-7. No abstract available.

33.

PLETHORA gradient formation mechanism separates auxin responses.

Mähönen AP, Ten Tusscher K, Siligato R, Smetana O, Díaz-Triviño S, Salojärvi J, Wachsman G, Prasad K, Heidstra R, Scheres B.

Nature. 2014 Nov 6;515(7525):125-129. doi: 10.1038/nature13663. Epub 2014 Aug 24.

34.

A SCARECROW-RETINOBLASTOMA protein network controls protective quiescence in the Arabidopsis root stem cell organizer.

Cruz-Ramírez A, Díaz-Triviño S, Wachsman G, Du Y, Arteága-Vázquez M, Zhang H, Benjamins R, Blilou I, Neef AB, Chandler V, Scheres B.

PLoS Biol. 2013 Nov;11(11):e1001724. doi: 10.1371/journal.pbio.1001724. Epub 2013 Nov 26.

35.

RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling.

Perilli S, Perez-Perez JM, Di Mambro R, Peris CL, Díaz-Triviño S, Del Bianco M, Pierdonati E, Moubayidin L, Cruz-Ramírez A, Costantino P, Scheres B, Sabatini S.

Plant Cell. 2013 Nov;25(11):4469-78. doi: 10.1105/tpc.113.116632. Epub 2013 Nov 27.

36.

Phyllotaxis and rhizotaxis in Arabidopsis are modified by three PLETHORA transcription factors.

Hofhuis H, Laskowski M, Du Y, Prasad K, Grigg S, Pinon V, Scheres B.

Curr Biol. 2013 Jun 3;23(11):956-62. doi: 10.1016/j.cub.2013.04.048. Epub 2013 May 16.

37.

Polar auxin transport: models and mechanisms.

van Berkel K, de Boer RJ, Scheres B, ten Tusscher K.

Development. 2013 Jun;140(11):2253-68. doi: 10.1242/dev.079111.

38.

CLASP-mediated cortical microtubule organization guides PIN polarization axis.

Kakar K, Zhang H, Scheres B, Dhonukshe P.

Nature. 2013 Mar 28;495(7442):529-33. doi: 10.1038/nature11980. Epub 2013 Mar 20. Retraction in: Nature. 2014 Apr 10;508(7495):274.

PMID:
23515161
39.

Rooting plant development.

Scheres B.

Development. 2013 Mar;140(5):939-41. doi: 10.1242/dev.093559.

40.

Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.

Zhang H, Zhou H, Berke L, Heck AJ, Mohammed S, Scheres B, Menke FL.

Mol Cell Proteomics. 2013 May;12(5):1158-69. doi: 10.1074/mcp.M112.021220. Epub 2013 Jan 17.

41.

Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis.

Pinon V, Prasad K, Grigg SP, Sanchez-Perez GF, Scheres B.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1107-12. doi: 10.1073/pnas.1213497110. Epub 2012 Dec 31.

42.

A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division.

Cruz-Ramírez A, Díaz-Triviño S, Blilou I, Grieneisen VA, Sozzani R, Zamioudis C, Miskolczi P, Nieuwland J, Benjamins R, Dhonukshe P, Caballero-Pérez J, Horvath B, Long Y, Mähönen AP, Zhang H, Xu J, Murray JA, Benfey PN, Bako L, Marée AF, Scheres B.

Cell. 2012 Aug 31;150(5):1002-15. doi: 10.1016/j.cell.2012.07.017. Epub 2012 Aug 23.

43.

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1- and PIN2-dependent auxin transport in Arabidopsis.

Sassi M, Lu Y, Zhang Y, Wang J, Dhonukshe P, Blilou I, Dai M, Li J, Gong X, Jaillais Y, Yu X, Traas J, Ruberti I, Wang H, Scheres B, Vernoux T, Xu J.

Development. 2012 Sep;139(18):3402-12. doi: 10.1242/dev.078212.

44.

A PHABULOSA/cytokinin feedback loop controls root growth in Arabidopsis.

Dello Ioio R, Galinha C, Fletcher AG, Grigg SP, Molnar A, Willemsen V, Scheres B, Sabatini S, Baulcombe D, Maini PK, Tsiantis M.

Curr Biol. 2012 Sep 25;22(18):1699-704. doi: 10.1016/j.cub.2012.07.005. Epub 2012 Aug 16.

45.

A ROP GTPase-dependent auxin signaling pathway regulates the subcellular distribution of PIN2 in Arabidopsis roots.

Lin D, Nagawa S, Chen J, Cao L, Chen X, Xu T, Li H, Dhonukshe P, Yamamuro C, Friml J, Scheres B, Fu Y, Yang Z.

Curr Biol. 2012 Jul 24;22(14):1319-25. doi: 10.1016/j.cub.2012.05.019. Epub 2012 Jun 7.

46.

Morphogengineering roots: comparing mechanisms of morphogen gradient formation.

Grieneisen VA, Scheres B, Hogeweg P, M Marée AF.

BMC Syst Biol. 2012 May 14;6:37. doi: 10.1186/1752-0509-6-37.

47.

ROP GTPase-dependent actin microfilaments promote PIN1 polarization by localized inhibition of clathrin-dependent endocytosis.

Nagawa S, Xu T, Lin D, Dhonukshe P, Zhang X, Friml J, Scheres B, Fu Y, Yang Z.

PLoS Biol. 2012;10(4):e1001299. doi: 10.1371/journal.pbio.1001299. Epub 2012 Apr 3.

48.

A PLETHORA-auxin transcription module controls cell division plane rotation through MAP65 and CLASP.

Dhonukshe P, Weits DA, Cruz-Ramirez A, Deinum EE, Tindemans SH, Kakar K, Prasad K, Mähönen AP, Ambrose C, Sasabe M, Wachsmann G, Luijten M, Bennett T, Machida Y, Heidstra R, Wasteneys G, Mulder BM, Scheres B.

Cell. 2012 Apr 13;149(2):383-96. doi: 10.1016/j.cell.2012.02.051. Retraction in: Cell. 2013 Nov 21;155(5):1189.

49.

Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.

Magyar Z, Horváth B, Khan S, Mohammed B, Henriques R, De Veylder L, Bakó L, Scheres B, Bögre L.

EMBO J. 2012 Mar 21;31(6):1480-93. doi: 10.1038/emboj.2012.13. Epub 2012 Feb 3.

50.

Callose biosynthesis regulates symplastic trafficking during root development.

Vatén A, Dettmer J, Wu S, Stierhof YD, Miyashima S, Yadav SR, Roberts CJ, Campilho A, Bulone V, Lichtenberger R, Lehesranta S, Mähönen AP, Kim JY, Jokitalo E, Sauer N, Scheres B, Nakajima K, Carlsbecker A, Gallagher KL, Helariutta Y.

Dev Cell. 2011 Dec 13;21(6):1144-55. doi: 10.1016/j.devcel.2011.10.006.

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