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Items: 11

1.

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity.

Chen X, Litzenburger UM, Wei Y, Schep AN, LaGory EL, Choudhry H, Giaccia AJ, Greenleaf WJ, Chang HY.

Nat Commun. 2018 Nov 2;9(1):4590. doi: 10.1038/s41467-018-07115-y.

2.

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.

Buenrostro JD, Corces MR, Lareau CA, Wu B, Schep AN, Aryee MJ, Majeti R, Chang HY, Greenleaf WJ.

Cell. 2018 May 31;173(6):1535-1548.e16. doi: 10.1016/j.cell.2018.03.074. Epub 2018 Apr 26.

3.

Transcript-indexed ATAC-seq for precision immune profiling.

Satpathy AT, Saligrama N, Buenrostro JD, Wei Y, Wu B, Rubin AJ, Granja JM, Lareau CA, Li R, Qi Y, Parker KR, Mumbach MR, Serratelli WS, Gennert DG, Schep AN, Corces MR, Khodadoust MS, Kim YH, Khavari PA, Greenleaf WJ, Davis MM, Chang HY.

Nat Med. 2018 May;24(5):580-590. doi: 10.1038/s41591-018-0008-8. Epub 2018 Apr 23.

4.

INO80 Chromatin Remodeling Coordinates Metabolic Homeostasis with Cell Division.

Gowans GJ, Schep AN, Wong KM, King DA, Greenleaf WJ, Morrison AJ.

Cell Rep. 2018 Jan 16;22(3):611-623. doi: 10.1016/j.celrep.2017.12.079.

5.

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data.

Schep AN, Wu B, Buenrostro JD, Greenleaf WJ.

Nat Methods. 2017 Oct;14(10):975-978. doi: 10.1038/nmeth.4401. Epub 2017 Aug 21.

6.

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12.

Wong GT, Bonocora RP, Schep AN, Beeler SM, Lee Fong AJ, Shull LM, Batachari LE, Dillon M, Evans C, Becker CJ, Bush EC, Hardin J, Wade JT, Stoebel DM.

J Bacteriol. 2017 Mar 14;199(7). pii: e00755-16. doi: 10.1128/JB.00755-16. Print 2017 Apr 1.

7.

Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility.

Denny SK, Yang D, Chuang CH, Brady JJ, Lim JS, GrĂ¼ner BM, Chiou SH, Schep AN, Baral J, Hamard C, Antoine M, Wislez M, Kong CS, Connolly AJ, Park KS, Sage J, Greenleaf WJ, Winslow MM.

Cell. 2016 Jul 14;166(2):328-342. doi: 10.1016/j.cell.2016.05.052. Epub 2016 Jun 30.

8.

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.

Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ.

Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27.

9.

A comparative analysis of transcription factor expression during metazoan embryonic development.

Schep AN, Adryan B.

PLoS One. 2013 Jun 14;8(6):e66826. doi: 10.1371/journal.pone.0066826. Print 2013.

10.

Transcriptional repression by the proximal exonic region at the human TERT gene.

Wong TC, Sokol ES, Schep AN, Punjiya M, Tran DA, Allan D, Drewell RA.

Gene. 2011 Oct 15;486(1-2):65-73. doi: 10.1016/j.gene.2011.07.016. Epub 2011 Jul 20.

PMID:
21787851
11.

Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene.

Tran DA, Wong TC, Schep AN, Drewell RA.

DNA Cell Biol. 2010 Sep;29(9):499-508. doi: 10.1089/dna.2009.0994.

PMID:
20438356

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