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MtSSPdb: the Medicago truncatula Small Secreted Peptide Database.

Boschiero C, Dai X, Lundquist PK, Roy S, de Bang T, Zhang S, Zhuang Z, Torres-Jerez I, Udvardi MK, Scheible WR, Zhao PX.

Plant Physiol. 2020 Feb 20. pii: pp.01088.2019. doi: 10.1104/pp.19.01088. [Epub ahead of print]


Identification and Functional Investigation of Genome-Encoded, Small, Secreted Peptides in Plants.

Boschiero C, Lundquist PK, Roy S, Dai X, Zhao PX, Scheible WR.

Curr Protoc Plant Biol. 2019 Sep;4(3):e20098. doi: 10.1002/cppb.20098.


Inducible reporter/driver lines for the Arabidopsis root with intrinsic reporting of activity state.

Machin FQ, Beckers M, Tian X, Fairnie A, Cheng T, Scheible WR, Doerner P.

Plant J. 2019 Apr;98(1):153-164. doi: 10.1111/tpj.14192. Epub 2019 Jan 23.


Genome-Wide Identification of Medicago Peptides Involved in Macronutrient Responses and Nodulation.

de Bang TC, Lundquist PK, Dai X, Boschiero C, Zhuang Z, Pant P, Torres-Jerez I, Roy S, Nogales J, Veerappan V, Dickstein R, Udvardi MK, Zhao PX, Scheible WR.

Plant Physiol. 2017 Dec;175(4):1669-1689. doi: 10.1104/pp.17.01096. Epub 2017 Oct 13.


Small peptide signaling pathways modulating macronutrient utilization in plants.

de Bang TC, Lay KS, Scheible WR, Takahashi H.

Curr Opin Plant Biol. 2017 Oct;39:31-39. doi: 10.1016/j.pbi.2017.05.005. Epub 2017 Jun 2. Review.


Corrigendum: Endogenous Arabidopsis messenger RNAs transported to distant tissues.

Thieme CJ, Rojas-Triana M, Stecyk E, Schudoma C, Zhang W, Yang L, Miñambres M, Walther D, Schulze WX, Paz-Ares J, Scheible WR, Kragler F.

Nat Plants. 2016 Nov 21;2:16195. doi: 10.1038/nplants.2016.195. No abstract available.


The transcription factor PHR1 regulates lipid remodeling and triacylglycerol accumulation in Arabidopsis thaliana during phosphorus starvation.

Pant BD, Burgos A, Pant P, Cuadros-Inostroza A, Willmitzer L, Scheible WR.

J Exp Bot. 2015 Apr;66(7):1907-18. doi: 10.1093/jxb/eru535. Epub 2015 Feb 13.


Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis.

Bielecka M, Watanabe M, Morcuende R, Scheible WR, Hawkesford MJ, Hesse H, Hoefgen R.

Front Plant Sci. 2015 Jan 28;5:805. doi: 10.3389/fpls.2014.00805. eCollection 2014.


Endogenous Arabidopsis messenger RNAs transported to distant tissues.

Thieme CJ, Rojas-Triana M, Stecyk E, Schudoma C, Zhang W, Yang L, Miñambres M, Walther D, Schulze WX, Paz-Ares J, Scheible WR, Kragler F.

Nat Plants. 2015 Mar 23;1(4):15025. doi: 10.1038/nplants.2015.25. Erratum in: Nat Plants. 2016 Nov 21;2:16195.


Root Traits and Phenotyping Strategies for Plant Improvement.

Paez-Garcia A, Motes CM, Scheible WR, Chen R, Blancaflor EB, Monteros MJ.

Plants (Basel). 2015 Jun 15;4(2):334-55. doi: 10.3390/plants4020334. Review.


Lipid biosynthesis and protein concentration respond uniquely to phosphate supply during leaf development in highly phosphorus-efficient Hakea prostrata.

Kuppusamy T, Giavalisco P, Arvidsson S, Sulpice R, Stitt M, Finnegan PM, Scheible WR, Lambers H, Jost R.

Plant Physiol. 2014 Dec;166(4):1891-911. doi: 10.1104/pp.114.248930. Epub 2014 Oct 14.


Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species.

Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N, Kuo J, Laliberté E, Pearse SJ, Raven JA, Scheible WR, Teste F, Veneklaas EJ, Stitt M, Lambers H.

Plant Cell Environ. 2014 Jun;37(6):1276-98.


Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.

Stief A, Altmann S, Hoffmann K, Pant BD, Scheible WR, Bäurle I.

Plant Cell. 2014 Apr;26(4):1792-1807. Epub 2014 Apr 25.


Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development.

Duarte GT, Matiolli CC, Pant BD, Schlereth A, Scheible WR, Stitt M, Vicentini R, Vincentz M.

J Exp Bot. 2013 Nov;64(14):4301-12. doi: 10.1093/jxb/ert239. Epub 2013 Aug 30.


Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency.

Lambers H, Cawthray GR, Giavalisco P, Kuo J, Laliberté E, Pearse SJ, Scheible WR, Stitt M, Teste F, Turner BL.

New Phytol. 2012 Dec;196(4):1098-108. doi: 10.1111/j.1469-8137.2012.04285.x. Epub 2012 Aug 31.


Opportunities for improving phosphorus-use efficiency in crop plants.

Veneklaas EJ, Lambers H, Bragg J, Finnegan PM, Lovelock CE, Plaxton WC, Price CA, Scheible WR, Shane MW, White PJ, Raven JA.

New Phytol. 2012 Jul;195(2):306-20. doi: 10.1111/j.1469-8137.2012.04190.x. Epub 2012 Jun 12. Review.


Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability.

Licausi F, Weits DA, Pant BD, Scheible WR, Geigenberger P, van Dongen JT.

New Phytol. 2011 Apr;190(2):442-56. doi: 10.1111/j.1469-8137.2010.03451.x. Epub 2010 Sep 14.


Involvement of TBL/DUF231 proteins into cell wall biology.

Bischoff V, Selbig J, Scheible WR.

Plant Signal Behav. 2010 Aug;5(8):1057-9. Epub 2010 Aug 1.


Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis.

Branscheid A, Sieh D, Pant BD, May P, Devers EA, Elkrog A, Schauser L, Scheible WR, Krajinski F.

Mol Plant Microbe Interact. 2010 Jul;23(7):915-26. doi: 10.1094/MPMI-23-7-0915.


TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis.

Bischoff V, Nita S, Neumetzler L, Schindelasch D, Urbain A, Eshed R, Persson S, Delmer D, Scheible WR.

Plant Physiol. 2010 Jun;153(2):590-602. doi: 10.1104/pp.110.153320. Epub 2010 Apr 13.


A conditional mutation in Arabidopsis thaliana separase induces chromosome non-disjunction, aberrant morphogenesis and cyclin B1;1 stability.

Wu S, Scheible WR, Schindelasch D, Van Den Daele H, De Veylder L, Baskin TI.

Development. 2010 Mar;137(6):953-61. doi: 10.1242/dev.041939. Epub 2010 Feb 11.


Gene expression profiling identifies two regulatory genes controlling dormancy and ABA sensitivity in Arabidopsis seeds.

Barrero JM, Millar AA, Griffiths J, Czechowski T, Scheible WR, Udvardi M, Reid JB, Ross JJ, Jacobsen JV, Gubler F.

Plant J. 2010 Feb;61(4):611-22. doi: 10.1111/j.1365-313X.2009.04088.x. Epub 2009 Nov 26.


Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis.

Rubin G, Tohge T, Matsuda F, Saito K, Scheible WR.

Plant Cell. 2009 Nov;21(11):3567-84. doi: 10.1105/tpc.109.067041. Epub 2009 Nov 20.


Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds.

DeBolt S, Scheible WR, Schrick K, Auer M, Beisson F, Bischoff V, Bouvier-Navé P, Carroll A, Hematy K, Li Y, Milne J, Nair M, Schaller H, Zemla M, Somerville C.

Plant Physiol. 2009 Sep;151(1):78-87. doi: 10.1104/pp.109.140582. Epub 2009 Jul 29.


Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing.

Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR.

Plant Physiol. 2009 Jul;150(3):1541-55. doi: 10.1104/pp.109.139139. Epub 2009 May 22.


Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.

Szarzynska B, Sobkowiak L, Pant BD, Balazadeh S, Scheible WR, Mueller-Roeber B, Jarmolowski A, Szweykowska-Kulinska Z.

Nucleic Acids Res. 2009 May;37(9):3083-93. doi: 10.1093/nar/gkp189. Epub 2009 Mar 20.


AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.

Lippold F, Sanchez DH, Musialak M, Schlereth A, Scheible WR, Hincha DK, Udvardi MK.

Plant Physiol. 2009 Apr;149(4):1761-72. doi: 10.1104/pp.108.134874. Epub 2009 Feb 11.


D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1.

Grigston JC, Osuna D, Scheible WR, Liu C, Stitt M, Jones AM.

FEBS Lett. 2008 Oct 29;582(25-26):3577-84. doi: 10.1016/j.febslet.2008.08.038. Epub 2008 Sep 24.


Eleven golden rules of quantitative RT-PCR.

Udvardi MK, Czechowski T, Scheible WR.

Plant Cell. 2008 Jul;20(7):1736-7. doi: 10.1105/tpc.108.061143. Epub 2008 Jul 29. No abstract available.


A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula.

Kakar K, Wandrey M, Czechowski T, Gaertner T, Scheible WR, Stitt M, Torres-Jerez I, Xiao Y, Redman JC, Wu HC, Cheung F, Town CD, Udvardi MK.

Plant Methods. 2008 Jul 8;4:18. doi: 10.1186/1746-4811-4-18.


Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis.

Gaude N, Nakamura Y, Scheible WR, Ohta H, Dörmann P.

Plant J. 2008 Oct;56(1):28-39. doi: 10.1111/j.1365-313X.2008.03582.x. Epub 2008 Jun 28.


MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis.

Pant BD, Buhtz A, Kehr J, Scheible WR.

Plant J. 2008 Mar;53(5):731-8. Epub 2007 Nov 6.


A conserved role for kinesin-5 in plant mitosis.

Bannigan A, Scheible WR, Lukowitz W, Fagerstrom C, Wadsworth P, Somerville C, Baskin TI.

J Cell Sci. 2007 Aug 15;120(Pt 16):2819-27. Epub 2007 Jul 24.


A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors.

Caldana C, Scheible WR, Mueller-Roeber B, Ruzicic S.

Plant Methods. 2007 Jun 8;3:7.


Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.

Osuna D, Usadel B, Morcuende R, Gibon Y, Bläsing OE, Höhne M, Günter M, Kamlage B, Trethewey R, Scheible WR, Stitt M.

Plant J. 2007 Feb;49(3):463-91. Epub 2007 Jan 1.


Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus.

Morcuende R, Bari R, Gibon Y, Zheng W, Pant BD, Bläsing O, Usadel B, Czechowski T, Udvardi MK, Stitt M, Scheible WR.

Plant Cell Environ. 2007 Jan;30(1):85-112.


PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.

Bari R, Datt Pant B, Stitt M, Scheible WR.

Plant Physiol. 2006 Jul;141(3):988-99. Epub 2006 May 5.


Effect of sulfur availability on the integrity of amino acid biosynthesis in plants.

Nikiforova VJ, Bielecka M, Gakière B, Krueger S, Rinder J, Kempa S, Morcuende R, Scheible WR, Hesse H, Hoefgen R.

Amino Acids. 2006 Mar;30(2):173-83. Epub 2006 Mar 24. Review.


Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana.

Lunn JE, Feil R, Hendriks JH, Gibon Y, Morcuende R, Osuna D, Scheible WR, Carillo P, Hajirezaei MR, Stitt M.

Biochem J. 2006 Jul 1;397(1):139-48.


Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis.

Bläsing OE, Gibon Y, Günther M, Höhne M, Morcuende R, Osuna D, Thimm O, Usadel B, Scheible WR, Stitt M.

Plant Cell. 2005 Dec;17(12):3257-81. Epub 2005 Nov 18.


Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression.

McGrath KC, Dombrecht B, Manners JM, Schenk PM, Edgar CI, Maclean DJ, Scheible WR, Udvardi MK, Kazan K.

Plant Physiol. 2005 Oct;139(2):949-59. Epub 2005 Sep 23.


Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.

Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR.

Plant Physiol. 2005 Sep;139(1):5-17.


Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.

Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M.

Plant Physiol. 2005 Jul;138(3):1195-204. Review.


Plant science. GRAS genes and the symbiotic green revolution.

Udvardi MK, Scheible WR.

Science. 2005 Jun 17;308(5729):1749-50. No abstract available.


Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.

Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M.

Plant Physiol. 2004 Sep;136(1):2483-99. Review.


The Arabidopsis sku6/spiral1 gene encodes a plus end-localized microtubule-interacting protein involved in directional cell expansion.

Sedbrook JC, Ehrhardt DW, Fisher SE, Scheible WR, Somerville CR.

Plant Cell. 2004 Jun;16(6):1506-20. Epub 2004 May 21.


Glycosyltransferases and cell wall biosynthesis: novel players and insights.

Scheible WR, Pauly M.

Curr Opin Plant Biol. 2004 Jun;7(3):285-95. Review.


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