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Items: 1 to 50 of 93

1.

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum).

Zaidi SS, Naqvi RZ, Asif M, Strickler S, Shakir S, Shafiq M, Khan AM, Amin I, Mishra B, Mukhtar MS, Scheffler BE, Scheffler JA, Mueller LA, Mansoor S.

Plant Biotechnol J. 2019 Aug 26. doi: 10.1111/pbi.13236. [Epub ahead of print]

2.

Whole genome sequencing of Asia II 1 species of whitefly reveals that genes involved in virus transmission and insecticide resistance have genetic variances between Asia II 1 and MEAM1 species.

Hussain S, Farooq M, Malik HJ, Amin I, Scheffler BE, Scheffler JA, Liu SS, Mansoor S.

BMC Genomics. 2019 Jun 18;20(1):507. doi: 10.1186/s12864-019-5877-9.

3.

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J.

Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.

PMID:
31043755
4.

Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing.

Grover CE, Arick MA 2nd, Thrash A, Conover JL, Sanders WS, Peterson DG, Frelichowski JE, Scheffler JA, Scheffler BE, Wendel JF.

Genome Biol Evol. 2019 Jan 1;11(1):53-71. doi: 10.1093/gbe/evy256.

5.

An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.).

Bhattacharjee R, Nwadili CO, Saski CA, Paterne A, Scheffler BE, Augusto J, Lopez-Montes A, Onyeka JT, Kumar PL, Bandyopadhyay R.

PLoS One. 2018 Oct 10;13(10):e0197717. doi: 10.1371/journal.pone.0197717. eCollection 2018.

6.

New tools to screen wild peanut species for aflatoxin accumulation and genetic fingerprinting.

Arias RS, Sobolev VS, Massa AN, Orner VA, Walk TE, Ballard LL, Simpson SA, Puppala N, Scheffler BE, de Blas F, Seijo GJ.

BMC Plant Biol. 2018 Aug 15;18(1):170. doi: 10.1186/s12870-018-1355-9.

7.

Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period.

Horvath DP, Bruggeman S, Moriles-Miller J, Anderson JV, Dogramaci M, Scheffler BE, Hernandez AG, Foley ME, Clay S.

Plant Direct. 2018 Apr 23;2(4):e00057. doi: 10.1002/pld3.57. eCollection 2018 Apr.

8.

Evaluation of carbon nanotube based copper nanoparticle composite for the efficient detection of agroviruses.

Tahir MA, Bajwa SZ, Mansoor S, Briddon RW, Khan WS, Scheffler BE, Amin I.

J Hazard Mater. 2018 Mar 15;346:27-35. doi: 10.1016/j.jhazmat.2017.12.007. Epub 2017 Dec 5.

PMID:
29232614
9.

Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum.

Naqvi RZ, Zaidi SS, Akhtar KP, Strickler S, Woldemariam M, Mishra B, Mukhtar MS, Scheffler BE, Scheffler JA, Jander G, Mueller LA, Asif M, Mansoor S.

Sci Rep. 2017 Nov 21;7(1):15880. doi: 10.1038/s41598-017-15963-9.

10.

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.

Saski CA, Scheffler BE, Hulse-Kemp AM, Liu B, Song Q, Ando A, Stelly DM, Scheffler JA, Grimwood J, Jones DC, Peterson DG, Schmutz J, Chen ZJ.

Sci Rep. 2017 Nov 10;7(1):15274. doi: 10.1038/s41598-017-14885-w.

11.

Genome Sequences of Three Strains of Aspergillus flavus for the Biological Control of Aflatoxin.

Weaver MA, Scheffler BE, Duke M, Ballard L, Abbas HK, Grodowitz MJ.

Genome Announc. 2017 Nov 2;5(44). pii: e01204-17. doi: 10.1128/genomeA.01204-17.

12.

Study of the genetic diversity of the aflatoxin biosynthesis cluster in Aspergillus section Flavi using insertion/deletion markers in peanut seeds from Georgia, USA.

Faustinelli PC, Palencia ER, Sobolev VS, Horn BW, Sheppard HT, Lamb MC, Wang XM, Scheffler BE, Martinez Castillo J, Arias RS.

Mycologia. 2017;109(2):200-209. doi: 10.1080/00275514.2017.1307095. Epub 2017 Apr 12.

PMID:
28506119
13.

Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton.

Zubair M, Zaidi SS, Shakir S, Farooq M, Amin I, Scheffler JA, Scheffler BE, Mansoor S.

Sci Rep. 2017 Apr 6;7(1):680. doi: 10.1038/s41598-017-00727-2.

14.

RNAi-mediated mortality of the whitefly through transgenic expression of double-stranded RNA homologous to acetylcholinesterase and ecdysone receptor in tobacco plants.

Malik HJ, Raza A, Amin I, Scheffler JA, Scheffler BE, Brown JK, Mansoor S.

Sci Rep. 2016 Dec 8;6:38469. doi: 10.1038/srep38469.

15.

Colistin Resistance mcr-1-Gene-Bearing Escherichia coli Strain from the United States.

Meinersmann RJ, Ladely SR, Plumblee JR, Hall MC, Simpson SA, Ballard LL, Scheffler BE, Genzlinger LL, Cook KL.

Genome Announc. 2016 Sep 1;4(5). pii: e00898-16. doi: 10.1128/genomeA.00898-16.

16.

Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan.

Zaidi SS, Shafiq M, Amin I, Scheffler BE, Scheffler JA, Briddon RW, Mansoor S.

PLoS One. 2016 May 23;11(5):e0155520. doi: 10.1371/journal.pone.0155520. eCollection 2016.

17.

RNA Interference based Approach to Down Regulate Osmoregulators of Whitefly (Bemisia tabaci): Potential Technology for the Control of Whitefly.

Raza A, Malik HJ, Shafiq M, Amin I, Scheffler JA, Scheffler BE, Mansoor S.

PLoS One. 2016 Apr 22;11(4):e0153883. doi: 10.1371/journal.pone.0153883. eCollection 2016.

18.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.

PMID:
26901068
19.

Genetic Diversity of the Two Commercial Tetraploid Cotton Species in the Gossypium Diversity Reference Set.

Hinze LL, Gazave E, Gore MA, Fang DD, Scheffler BE, Yu JZ, Jones DC, Frelichowski J, Percy RG.

J Hered. 2016 May;107(3):274-86. doi: 10.1093/jhered/esw004. Epub 2016 Jan 16. Erratum in: J Hered. 2016 Sep;107(5):478.

20.

Virus-Induced Gene Silencing in Cultivated Cotton (Gossypium spp.) Using Tobacco Rattle Virus.

Mustafa R, Shafiq M, Mansoor S, Briddon RW, Scheffler BE, Scheffler J, Amin I.

Mol Biotechnol. 2016 Jan;58(1):65-72. doi: 10.1007/s12033-015-9904-z.

PMID:
26603442
21.

Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences.

Gardner EM, Laricchia KM, Murphy M, Ragone D, Scheffler BE, Simpson S, Williams EW, Zerega NJ.

Appl Plant Sci. 2015 Sep 10;3(9). pii: apps.1500049. doi: 10.3732/apps.1500049. eCollection 2015 Sep.

22.

Genomic Resources for Water Yam (Dioscorea alata L.): Analyses of EST-Sequences, De Novo Sequencing and GBS Libraries.

Saski CA, Bhattacharjee R, Scheffler BE, Asiedu R.

PLoS One. 2015 Jul 29;10(7):e0134031. doi: 10.1371/journal.pone.0134031. eCollection 2015.

23.

Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation.

Tuttle JR, Nah G, Duke MV, Alexander DC, Guan X, Song Q, Chen ZJ, Scheffler BE, Haigler CH.

BMC Genomics. 2015 Jun 27;16:477. doi: 10.1186/s12864-015-1708-9.

24.

Development of a Large Set of Microsatellite Markers in Zapote Mamey (Pouteria sapota (Jacq.) H.E. Moore & Stearn) and Their Potential Use in the Study of the Species.

Arias RS, Martínez-Castillo J, Sobolev VS, Blancarte-Jasso NH, Simpson SA, Ballard LL, Duke MV, Liu XF, Irish BM, Scheffler BE.

Molecules. 2015 Jun 22;20(6):11400-17. doi: 10.3390/molecules200611400.

25.

Transcriptomic Changes in Zebrafish Embryos and Larvae Following Benzo[a]pyrene Exposure.

Fang X, Corrales J, Thornton C, Clerk T, Scheffler BE, Willett KL.

Toxicol Sci. 2015 Aug;146(2):395-411. doi: 10.1093/toxsci/kfv105. Epub 2015 May 21.

26.

Development of microsatellites from Fothergilla ×intermedia (Hamamelidaceae) and cross transfer to four other genera within Hamamelidaceae.

Hatmaker EA, Wadl PA, Mantooth K, Scheffler BE, Ownley BH, Trigiano RN.

Appl Plant Sci. 2015 Apr 7;3(4). pii: apps.1400123. doi: 10.3732/apps.1400123. eCollection 2015 Apr.

27.

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ.

Nat Biotechnol. 2015 May;33(5):531-7. doi: 10.1038/nbt.3207. Epub 2015 Apr 20.

PMID:
25893781
28.

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.

Hulse-Kemp AM, Ashrafi H, Stoffel K, Zheng X, Saski CA, Scheffler BE, Fang DD, Chen ZJ, Van Deynze A, Stelly DM.

G3 (Bethesda). 2015 Apr 9;5(6):1095-105. doi: 10.1534/g3.115.017749.

29.

Molecular characterization of the Gossypium Diversity Reference Set of the US National Cotton Germplasm Collection.

Hinze LL, Fang DD, Gore MA, Scheffler BE, Yu JZ, Frelichowski J, Percy RG.

Theor Appl Genet. 2015 Feb;128(2):313-27. doi: 10.1007/s00122-014-2431-7. Epub 2014 Nov 28.

PMID:
25431191
30.

Isolation and characterization of microsatellite loci for Cornus sanguinea (Cornaceae).

Wadl PA, Hatmaker EA, Fussi B, Scheffler BE, Trigiano RN.

Appl Plant Sci. 2013 Sep 2;1(9). pii: apps.1300012. doi: 10.3732/apps.1300012. eCollection 2013 Sep.

31.

Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton).

Guo H, Wang X, Gundlach H, Mayer KF, Peterson DG, Scheffler BE, Chee PW, Paterson AH.

Genetics. 2014 Aug;197(4):1153-63. doi: 10.1534/genetics.114.166124. Epub 2014 Jun 6.

32.

Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure.

Corrales J, Fang X, Thornton C, Mei W, Barbazuk WB, Duke M, Scheffler BE, Willett KL.

Comp Biochem Physiol C Toxicol Pharmacol. 2014 Jun;163:37-46. doi: 10.1016/j.cbpc.2014.02.005. Epub 2014 Feb 24.

33.

The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families.

Link TI, Lang P, Scheffler BE, Duke MV, Graham MA, Cooper B, Tucker ML, van de Mortel M, Voegele RT, Mendgen K, Baum TJ, Whitham SA.

Mol Plant Pathol. 2014 May;15(4):379-93. doi: 10.1111/mpp.12099. Epub 2013 Dec 17.

34.

RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.

Bowman MJ, Park W, Bauer PJ, Udall JA, Page JT, Raney J, Scheffler BE, Jones DC, Campbell BT.

PLoS One. 2013 Dec 6;8(12):e82634. doi: 10.1371/journal.pone.0082634. eCollection 2013.

35.

Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087.

Tekedar HC, Karsi A, Williams ML, Vamenta S, Banes MM, Duke M, Scheffler BE, Lawrence ML.

Genome Announc. 2013 Nov 21;1(6). pii: e00959-13. doi: 10.1128/genomeA.00959-13.

36.

Candidate gene association mapping of Sclerotinia stalk rot resistance in sunflower (Helianthus annuus L.) uncovers the importance of COI1 homologs.

Talukder ZI, Hulke BS, Qi L, Scheffler BE, Pegadaraju V, McPhee K, Gulya TJ.

Theor Appl Genet. 2014 Jan;127(1):193-209. doi: 10.1007/s00122-013-2210-x. Epub 2013 Nov 6.

PMID:
24193356
37.

Developmental regulation of diacylglycerol acyltransferase family gene expression in tung tree tissues.

Cao H, Shockey JM, Klasson KT, Chapital DC, Mason CB, Scheffler BE.

PLoS One. 2013 Oct 11;8(10):e76946. doi: 10.1371/journal.pone.0076946. eCollection 2013.

38.

Global and gene specific DNA methylation changes during zebrafish development.

Fang X, Corrales J, Thornton C, Scheffler BE, Willett KL.

Comp Biochem Physiol B Biochem Mol Biol. 2013 Sep;166(1):99-108. doi: 10.1016/j.cbpb.2013.07.007. Epub 2013 Jul 20.

39.

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN.

Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53.

40.

Development and characterization of simple sequence repeats for Bipolaris sorokiniana and cross transferability to related species.

Fajolu OL, Wadl PA, Vu AL, Gwinn KD, Scheffler BE, Trigiano RN, Ownley BH.

Mycologia. 2013 Sep-Oct;105(5):1164-73. doi: 10.3852/12-210. Epub 2013 May 25.

PMID:
23709521
41.

Camelina seed transcriptome: a tool for meal and oil improvement and translational research.

Nguyen HT, Silva JE, Podicheti R, Macrander J, Yang W, Nazarenus TJ, Nam JW, Jaworski JG, Lu C, Scheffler BE, Mockaitis K, Cahoon EB.

Plant Biotechnol J. 2013 Aug;11(6):759-69. doi: 10.1111/pbi.12068. Epub 2013 Apr 3.

42.

Benzo[a]pyrene decreases global and gene specific DNA methylation during zebrafish development.

Fang X, Thornton C, Scheffler BE, Willett KL.

Environ Toxicol Pharmacol. 2013 Jul;36(1):40-50. doi: 10.1016/j.etap.2013.02.014. Epub 2013 Feb 28.

43.

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J.

Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.

PMID:
23257886
44.

Genome-wide identification of differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.).

Park W, Scheffler BE, Bauer PJ, Campbell BT.

BMC Plant Biol. 2012 Jun 15;12:90. doi: 10.1186/1471-2229-12-90.

45.

Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina.

Trigiano RN, Wadl PA, Dean D, Hadziabdic D, Scheffler BE, Runge F, Telle S, Thines M, Ristaino J, Spring O.

Mycologia. 2012 May-Jun;104(3):633-40. doi: 10.3852/11-288. Epub 2012 Jan 12.

PMID:
22241615
46.

Development of microsatellite loci for the endangered species Pityopsis ruthii (Asteraceae).

Wadl PA, Dattilo AJ, Scheffler BE, Trigiano RN.

Am J Bot. 2011 Dec;98(12):e342-5. doi: 10.3732/ajb.1100100. Epub 2011 Nov 4.

47.

Permanent Genetic Resources added to the Molecular Ecology Resources Database 1 February 2010-31 March 2010.

Molecular Ecology Resources Primer Development Consortium, Aurelle D, Baker AJ, Bottin L, Brouat C, Caccone A, Chaix A, Dhakal P, Ding Y, Duplantier JM, Fiedler W, Fietz J, Fong Y, Forcioli D, Freitas TR, Gunnarsson GH, Haddrath O, Hadziabdic D, Hauksdottir S, Havill NP, Heinrich M, Heinz T, Hjorleifsdottir S, Hong Y, Hreggvidsson GO, Huchette S, Hurst J, Kane M, Kane NC, Kawakami T, Ke W, Keith RA, Klauke N, Klein JL, Kun JF, Li C, Li GQ, Li JJ, Loiseau A, Lu LZ, Lucas M, Martins-Ferreira C, Mokhtar-Jamaï K, Olafsson K, Pampoulie C, Pan L, Pooler MR, Ren JD, Rinehart TA, Roussel V, Santos MO, Schaefer HM, Scheffler BE, Schmidt A, Segelbacher G, Shen JD, Skirnisdottir S, Sommer S, Tao ZR, Taubert R, Tian Y, Tomiuk J, Trigiano RN, Ungerer MC, Van Wormhoudt A, Wadl PA, Wang DQ, Weis-Dootz T, Xia Q, Yuan QY.

Mol Ecol Resour. 2010 Jul;10(4):751-4. doi: 10.1111/j.1755-0998.2010.02871.x. Epub 2010 May 23.

PMID:
21565086
48.

Optimized construction of microsatellite-enriched libraries.

Techen N, Arias RS, Glynn NC, Pan Z, Khan IA, Scheffler BE.

Mol Ecol Resour. 2010 May;10(3):508-15. doi: 10.1111/j.1755-0998.2009.02802.x. Epub 2009 Dec 9.

PMID:
21565050
49.

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.).

Narina SS, Buyyarapu R, Kottapalli KR, Sartie AM, Ali MI, Robert A, Hodeba MJ, Sayre BL, Scheffler BE.

BMC Genomics. 2011 Feb 9;12:100. doi: 10.1186/1471-2164-12-100.

50.

Metagenomic analysis of the turkey gut RNA virus community.

Day JM, Ballard LL, Duke MV, Scheffler BE, Zsak L.

Virol J. 2010 Nov 12;7:313. doi: 10.1186/1743-422X-7-313.

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