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Items: 1 to 50 of 470

1.

Graph genomes article collection.

Schatz MC, Cosgrove A.

Genome Biol. 2019 Feb 1;20(1):25. doi: 10.1186/s13059-019-1636-0. No abstract available.

2.

Controversies in drug allergy: Consensus documents from the world experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

J Allergy Clin Immunol. 2019 Jan;143(1):82-83. doi: 10.1016/j.jaci.2018.10.014. No abstract available.

PMID:
30612666
3.

Controversies in drug allergy: consensus documents from the world experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

World Allergy Organ J. 2018 Dec 19;11(1):41. doi: 10.1186/s40413-018-0223-2. eCollection 2018. No abstract available.

4.

Novel circular RNA NF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16.

Wang Z, Ma K, Pitts S, Cheng Y, Liu X, Ke X, Kovaka S, Ashktorab H, Smoot DT, Schatz M, Wang Z, Meltzer SJ.

Endocr Relat Cancer. 2018 Dec 1. pii: ERC-18-0478.R1. doi: 10.1530/ERC-18-0478. [Epub ahead of print]

PMID:
30576282
5.

Controversies in Drug Allergy: Consensus Documents From the World Experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

J Allergy Clin Immunol Pract. 2019 Jan;7(1):66-67. doi: 10.1016/j.jaip.2018.10.012. Epub 2018 Dec 18. No abstract available.

PMID:
30573420
6.

The Journal of Allergy and Clinical Immunology: In Practice 2018 Highlights.

Schatz M, Sicherer SH, Khan D, Zeiger RS.

J Allergy Clin Immunol Pract. 2019 Feb;7(2):393-411. doi: 10.1016/j.jaip.2018.12.007. Epub 2018 Dec 15. Review.

PMID:
30557718
7.

Parrot Genomes and the Evolution of Heightened Longevity and Cognition.

Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, Aleixo A, Schneider MPC, Jarvis ED, Vasconcelos ATR, Prosdocimi F, Mello CV.

Curr Biol. 2018 Dec 17;28(24):4001-4008.e7. doi: 10.1016/j.cub.2018.10.050. Epub 2018 Dec 6.

PMID:
30528582
8.

Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish.

Dennenmoser S, Sedlazeck FJ, Schatz MC, Altmüller J, Zytnicki M, Nolte AW.

Mol Ecol. 2018 Dec 5. doi: 10.1111/mec.14969. [Epub ahead of print]

PMID:
30520198
9.

Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children.

Mirzakhani H, Carey VJ, Zeiger R, Bacharier LB, O'Connor GT, Schatz MX, Laranjo N, Weiss ST, Litonjua AA.

Clin Exp Allergy. 2018 Nov 21. doi: 10.1111/cea.13320. [Epub ahead of print]

PMID:
30461089
10.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Dec;50(12):1754. doi: 10.1038/s41588-018-0293-7.

PMID:
30425353
11.

Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates.

Tamma PD, Fan Y, Bergman Y, Pertea G, Kazmi AQ, Lewis S, Carroll KC, Schatz MC, Timp W, Simner PJ.

Antimicrob Agents Chemother. 2018 Dec 21;63(1). pii: e01923-18. doi: 10.1128/AAC.01923-18. Print 2019 Jan.

PMID:
30373801
12.

The HEDIS Medication Management for People with Asthma measure is not associated with improved asthma outcomes.

Desai SH, Crawford WW, Sheikh J, Li ZQ, Chen W, Gong A, Vogel R, Schatz M.

J Allergy Clin Immunol Pract. 2018 Oct 25. pii: S2213-2198(18)30672-X. doi: 10.1016/j.jaip.2018.10.015. [Epub ahead of print] No abstract available.

PMID:
30368008
13.

Needs assessment survey for a food allergy control tool.

Lippner E, Sicherer SH, Land MH, Schatz M, Dinakar C.

J Allergy Clin Immunol Pract. 2019 Feb;7(2):701-703.e2. doi: 10.1016/j.jaip.2018.09.035. Epub 2018 Oct 11. No abstract available.

PMID:
30317004
14.

Vitamin K1 cream significantly reduces incidence and severity of cetuximab-related acneiform skin rash in women: a post hoc analysis of the EVITA trial.

Gaiser MR, Lorenzen S, Merx K, Trojan J, Ocvirk J, Ettrich TJ, Al-Batran SE, Schulz H, Homann N, Feustel HP, Schatz M, Kripp M, Schulte N, Heeger S, Vlassak S, Koch W, Hofheinz RD.

Ann Oncol. 2018 Dec 1;29(12):2393-2395. doi: 10.1093/annonc/mdy451. No abstract available.

PMID:
30307464
15.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Erratum in: Nat Genet. 2018 Dec;50(12):1754.

PMID:
30297971
16.

Antifungal Polyamides of Hydroxycinnamic Acids from Sunflower Bee Pollen.

Kyselka J, Bleha R, Dragoun M, Bialasová K, Horáčková Š, Schätz M, Sluková M, Filip V, Synytsya A.

J Agric Food Chem. 2018 Oct 24;66(42):11018-11026. doi: 10.1021/acs.jafc.8b03976. Epub 2018 Oct 15.

PMID:
30296072
17.

Unstable equilibria and invariant manifolds in quasi-two-dimensional Kolmogorov-like flow.

Suri B, Tithof J, Grigoriev RO, Schatz MF.

Phys Rev E. 2018 Aug;98(2-1):023105. doi: 10.1103/PhysRevE.98.023105.

PMID:
30253486
18.

Control of Confounding and Reporting of Results in Causal Inference Studies. Guidance for Authors from Editors of Respiratory, Sleep, and Critical Care Journals.

Lederer DJ, Bell SC, Branson RD, Chalmers JD, Marshall R, Maslove DM, Ost DE, Punjabi NM, Schatz M, Smyth AR, Stewart PW, Suissa S, Adjei AA, Akdis CA, Azoulay É, Bakker J, Ballas ZK, Bardin PG, Barreiro E, Bellomo R, Bernstein JA, Brusasco V, Buchman TG, Chokroverty S, Collop NA, Crapo JD, Fitzgerald DA, Hale L, Hart N, Herth FJ, Iwashyna TJ, Jenkins G, Kolb M, Marks GB, Mazzone P, Moorman JR, Murphy TM, Noah TL, Reynolds P, Riemann D, Russell RE, Sheikh A, Sotgiu G, Swenson ER, Szczesniak R, Szymusiak R, Teboul JL, Vincent JL.

Ann Am Thorac Soc. 2019 Jan;16(1):22-28. doi: 10.1513/AnnalsATS.201808-564PS. No abstract available. Erratum in: Ann Am Thorac Soc. 2019 Feb;16(2):283.

PMID:
30230362
19.

Whole Body Vibration Therapy after Ischemia Reduces Brain Damage in Reproductively Senescent Female Rats.

Raval AP, Schatz M, Bhattacharya P, d'Adesky N, Rundek T, Dietrich WD, Bramlett HM.

Int J Mol Sci. 2018 Sep 13;19(9). pii: E2749. doi: 10.3390/ijms19092749.

20.

Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes.

Kent CF, Dey A, Patel H, Tsvetkov N, Tiwari T, MacPhail VJ, Gobeil Y, Harpur BA, Gurtowski J, Schatz MC, Colla SR, Zayed A.

Front Genet. 2018 Aug 10;9:316. doi: 10.3389/fgene.2018.00316. eCollection 2018.

21.

Implications of Changes in U.S. Food and Drug Administration Prescribing Information Regarding the Safety and Use of Asthma Biologics during Pregnancy.

Schatz M, Krishnan JA, Chambers C.

Ann Am Thorac Soc. 2018 Oct;15(10):1131-1136. doi: 10.1513/AnnalsATS.201806-400PP. No abstract available.

PMID:
30130420
22.

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D.

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. No abstract available.

23.

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.

Nattestad M, Goodwin S, Ng K, Baslan T, Sedlazeck FJ, Rescheneder P, Garvin T, Fang H, Gurtowski J, Hutton E, Tseng E, Chin CS, Beck T, Sundaravadanam Y, Kramer M, Antoniou E, McPherson JD, Hicks J, McCombie WR, Schatz MC.

Genome Res. 2018 Aug;28(8):1126-1135. doi: 10.1101/gr.231100.117. Epub 2018 Jun 28.

24.

Mitotic defects in fission yeast lipid metabolism 'cut' mutants are suppressed by ammonium chloride.

Zach R, Tvaružková J, Schätz M, Tupa O, Grallert B, Prevorovský M.

FEMS Yeast Res. 2018 Sep 1;18(6). doi: 10.1093/femsyr/foy064.

25.

Controller therapy in Asians and whites with persistent Asthma.

Chen W, Schatz M, Liang Z, Li Q, Sadikova E, Zhang Z, Bagga S, Zeiger RS.

Asian Pac J Allergy Immunol. 2018 Jun 11. doi: 10.12932/AP-210617-0105. [Epub ahead of print]

26.

Cyclophilin A enables specific HIV-1 Tat palmitoylation and accumulation in uninfected cells.

Chopard C, Tong PBV, Tóth P, Schatz M, Yezid H, Debaisieux S, Mettling C, Gross A, Pugnière M, Tu A, Strub JM, Mesnard JM, Vitale N, Beaumelle B.

Nat Commun. 2018 Jun 8;9(1):2251. doi: 10.1038/s41467-018-04674-y.

27.

Precise detection of de novo single nucleotide variants in human genomes.

Gómez-Romero L, Palacios-Flores K, Reyes J, García D, Boege M, Dávila G, Flores M, Schatz MC, Palacios R.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):5516-5521. doi: 10.1073/pnas.1802244115. Epub 2018 May 7.

28.

Critical Care Nurses' Cognitive Ergonomics Related to Medical Device Alarms.

Wung SF, Schatz MR.

Crit Care Nurs Clin North Am. 2018 Jun;30(2):191-202. doi: 10.1016/j.cnc.2018.02.002. Epub 2018 Mar 20.

PMID:
29724438
29.

Accurate detection of complex structural variations using single-molecule sequencing.

Sedlazeck FJ, Rescheneder P, Smolka M, Fang H, Nattestad M, von Haeseler A, Schatz MC.

Nat Methods. 2018 Jun;15(6):461-468. doi: 10.1038/s41592-018-0001-7. Epub 2018 Apr 30.

30.

Nicotine Alters Estrogen Receptor-Beta-Regulated Inflammasome Activity and Exacerbates Ischemic Brain Damage in Female Rats.

d'Adesky ND, de Rivero Vaccari JP, Bhattacharya P, Schatz M, Perez-Pinzon MA, Bramlett HM, Raval AP.

Int J Mol Sci. 2018 Apr 30;19(5). pii: E1330. doi: 10.3390/ijms19051330.

31.

Clinical Updates in Women's Health Care Summary: Asthma.

Namazy JA, Schatz M, Dombrowski M.

Obstet Gynecol. 2018 May;131(5):954. doi: 10.1097/AOG.0000000000002630.

PMID:
29683908
32.

Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae.

Simner PJ, Antar AAR, Hao S, Gurtowski J, Tamma PD, Rock C, Opene BNA, Tekle T, Carroll KC, Schatz MC, Timp W.

J Antimicrob Chemother. 2018 Jul 1;73(7):1796-1803. doi: 10.1093/jac/dky121.

PMID:
29648629
33.

Piercing the dark matter: bioinformatics of long-range sequencing and mapping.

Sedlazeck FJ, Lee H, Darby CA, Schatz MC.

Nat Rev Genet. 2018 Jun;19(6):329-346. doi: 10.1038/s41576-018-0003-4. Review.

PMID:
29599501
34.

Unconventional secretion of viral proteins.

Schatz M, Tong PBV, Beaumelle B.

Semin Cell Dev Biol. 2018 Nov;83:8-11. doi: 10.1016/j.semcdb.2018.03.008. Epub 2018 Mar 24. Review.

PMID:
29571970
35.

Patterns of prednisone use during pregnancy in women with rheumatoid arthritis: Daily and cumulative dose.

Palmsten K, Rolland M, Hebert MF, Clowse MEB, Schatz M, Xu R, Chambers CD.

Pharmacoepidemiol Drug Saf. 2018 Apr;27(4):430-438. doi: 10.1002/pds.4410. Epub 2018 Feb 28.

PMID:
29488292
36.

Claims-based risk model for first severe COPD exacerbation.

Stanford RH, Nag A, Mapel DW, Lee TA, Rosiello R, Schatz M, Vekeman F, Gauthier-Loiselle M, Merrigan JFP, Duh MS.

Am J Manag Care. 2018 Feb 1;24(2):e45-e53.

37.

Proper experimental design requires randomization/balancing of molecular ecology experiments.

Bálint M, Márton O, Schatz M, Düring RA, Grossart HP.

Ecol Evol. 2018 Jan 10;8(3):1786-1793. doi: 10.1002/ece3.3687. eCollection 2018 Feb.

38.

Management of Asthma during Pregnancy: Optimizing Outcomes and Minimizing Risk.

Namazy JA, Schatz M.

Semin Respir Crit Care Med. 2018 Feb;39(1):29-35. doi: 10.1055/s-0037-1606216. Epub 2018 Feb 10. Review.

PMID:
29427983
39.

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library.

Hulse-Kemp AM, Maheshwari S, Stoffel K, Hill TA, Jaffe D, Williams SR, Weisenfeld N, Ramakrishnan S, Kumar V, Shah P, Schatz MC, Church DM, Van Deynze A.

Hortic Res. 2018 Jan 12;5:4. doi: 10.1038/s41438-017-0011-0. eCollection 2018.

40.

The Journal of Allergy and Clinical Immunology: In Practice 2017 Year in Review.

Schatz M, Sicherer SH, Zeiger RS.

J Allergy Clin Immunol Pract. 2018 Mar - Apr;6(2):328-352. doi: 10.1016/j.jaip.2017.12.016. Epub 2018 Feb 1. Review.

PMID:
29397373
41.

Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.

Fang H, Huang YF, Radhakrishnan A, Siepel A, Lyon GJ, Schatz MC.

Cell Syst. 2018 Feb 28;6(2):180-191.e4. doi: 10.1016/j.cels.2017.12.007. Epub 2018 Jan 17.

PMID:
29361467
42.

EVITA-a double-blind, vehicle-controlled, randomized phase II trial of vitamin K1 cream as prophylaxis for cetuximab-induced skin toxicity.

Hofheinz RD, Lorenzen S, Trojan J, Ocvirk J, Ettrich TJ, Al-Batran SE, Schulz H, Homann N, Feustel HP, Schatz M, Kripp M, Schulte N, Tetyusheva M, Heeger S, Vlassak S, Merx K.

Ann Oncol. 2018 Apr 1;29(4):1010-1015. doi: 10.1093/annonc/mdy015.

PMID:
29360920
43.

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning.

Luo R, Sedlazeck FJ, Darby CA, Kelly SM, Schatz MC.

Comput Struct Biotechnol J. 2017 Nov 9;15:478-484. doi: 10.1016/j.csbj.2017.10.002. eCollection 2017.

44.

Relationship of Blood Eosinophil Count to Exacerbations in Chronic Obstructive Pulmonary Disease.

Zeiger RS, Tran TN, Butler RK, Schatz M, Li Q, Khatry DB, Martin U, Kawatkar AA, Chen W.

J Allergy Clin Immunol Pract. 2018 May - Jun;6(3):944-954.e5. doi: 10.1016/j.jaip.2017.10.004. Epub 2017 Nov 15.

PMID:
29153881
45.

Comparative effectiveness trials in asthma - how will I recognize one?

Nyenhuis SM, Apter AJ, Schatz M, Krishnan JA.

Curr Opin Pulm Med. 2018 Jan;24(1):78-82. doi: 10.1097/MCP.0000000000000442. Review.

46.

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin.

Afanasyev P, Seer-Linnemayr C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M.

IUCrJ. 2017 Aug 31;4(Pt 5):678-694. doi: 10.1107/S2052252517010922. eCollection 2017 Sep 1.

47.

The Association of Maternal Asthma and Early Pregnancy Vitamin D with Risk of Preeclampsia: An Observation From Vitamin D Antenatal Asthma Reduction Trial (VDAART).

Mirzakhani H, Carey VJ, McElrath TF, Laranjo N, O'Connor G, Iverson RE, Lee-Parritz A, Strunk RC, Bacharier LB, Macones GA, Zeiger RS, Schatz M, Hollis BW, Litonjua AA, Weiss ST.

J Allergy Clin Immunol Pract. 2018 Mar - Apr;6(2):600-608.e2. doi: 10.1016/j.jaip.2017.07.018. Epub 2017 Sep 8.

PMID:
28923490
48.

Erratum to: The advantages of SMRT sequencing.

Roberts RJ, Carneiro MO, Schatz MC.

Genome Biol. 2017 Aug 16;18(1):156. doi: 10.1186/s13059-017-1295-y. No abstract available.

49.

Hybrid assembly with long and short reads improves discovery of gene family expansions.

Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT.

BMC Genomics. 2017 Jul 19;18(1):541. doi: 10.1186/s12864-017-3927-8.

50.

Drivers of health care costs for adults with persistent asthma.

Zeiger RS, Tran TN, Schatz M, Li Q, Chen W, Khatry DB, Davis J, Kawatkar AA.

J Allergy Clin Immunol Pract. 2018 Jan - Feb;6(1):265-268.e4. doi: 10.1016/j.jaip.2017.05.026. Epub 2017 Jul 12. No abstract available.

PMID:
28709819

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