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Items: 1 to 50 of 504

1.

Asthma control is associated with economic outcomes, work productivity and health-related quality of life in patients with asthma.

Lee LK, Ramakrishnan K, Safioti G, Ariely R, Schatz M.

BMJ Open Respir Res. 2020 Mar;7(1). pii: e000534. doi: 10.1136/bmjresp-2019-000534.

2.

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.

Ranallo-Benavidez TR, Jaron KS, Schatz MC.

Nat Commun. 2020 Mar 18;11(1):1432. doi: 10.1038/s41467-020-14998-3.

3.

Development and Reporting of Prediction Models: Guidance for Authors From Editors of Respiratory, Sleep, and Critical Care Journals.

Leisman DE, Harhay MO, Lederer DJ, Abramson M, Adjei AA, Bakker J, Ballas ZK, Barreiro E, Bell SC, Bellomo R, Bernstein JA, Branson RD, Brusasco V, Chalmers JD, Chokroverty S, Citerio G, Collop NA, Cooke CR, Crapo JD, Donaldson G, Fitzgerald DA, Grainger E, Hale L, Herth FJ, Kochanek PM, Marks G, Moorman JR, Ost DE, Schatz M, Sheikh A, Smyth AR, Stewart I, Stewart PW, Swenson ER, Szymusiak R, Teboul JL, Vincent JL, Wedzicha JA, Maslove DM.

Crit Care Med. 2020 Mar 4. doi: 10.1097/CCM.0000000000004246. [Epub ahead of print]

PMID:
32141923
4.

Sleep Apnea Detection with Polysomnography and Depth Sensors.

Schätz M, Procházka A, Kuchyňka J, Vyšata O.

Sensors (Basel). 2020 Mar 2;20(5). pii: E1360. doi: 10.3390/s20051360.

5.

Clinicians' Perspective of the New Pregnancy and Lactation Labeling Rule (PLLR): Results from an AAAAI/FDA Survey.

Namazy J, Chambers C, Sahin L, Johnson T, Dinatale M, Lappin B, Schatz M.

J Allergy Clin Immunol Pract. 2020 Feb 19. pii: S2213-2198(20)30144-6. doi: 10.1016/j.jaip.2020.01.056. [Epub ahead of print]

PMID:
32084595
6.

De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays.

Xu Z, Green B, Benoit N, Schatz M, Wheelan S, Cormack B.

Mol Microbiol. 2020 Feb 18. doi: 10.1111/mmi.14488. [Epub ahead of print]

PMID:
32068314
7.

Burden of Specialist-Diagnosed Chronic Cough in Adults.

Zeiger RS, Schatz M, Butler RK, Weaver JP, Bali V, Chen W.

J Allergy Clin Immunol Pract. 2020 Feb 12. pii: S2213-2198(20)30141-0. doi: 10.1016/j.jaip.2020.01.054. [Epub ahead of print]

PMID:
32059869
8.

Six-Year Follow-up of a Trial of Antenatal Vitamin D for Asthma Reduction.

Litonjua AA, Carey VJ, Laranjo N, Stubbs BJ, Mirzakhani H, O'Connor GT, Sandel M, Beigelman A, Bacharier LB, Zeiger RS, Schatz M, Hollis BW, Weiss ST.

N Engl J Med. 2020 Feb 6;382(6):525-533. doi: 10.1056/NEJMoa1906137.

PMID:
32023372
9.

Perinatal Outcomes Associated with Maternal Asthma and Its Severity and Control during Pregnancy.

Yland JJ, Bateman BT, Huybrechts KF, Brill G, Schatz MX, Wurst KE, Hernández-Díaz S.

J Allergy Clin Immunol Pract. 2020 Jan 22. pii: S2213-2198(20)30056-8. doi: 10.1016/j.jaip.2020.01.016. [Epub ahead of print]

PMID:
31981730
10.

The Journal of Allergy and Clinical Immunology: In Practice 2019 Highlights.

Schatz M, Sicherer SH, Khan DA, Zeiger RS.

J Allergy Clin Immunol Pract. 2020 Mar;8(3):912-936. doi: 10.1016/j.jaip.2020.01.002. Epub 2020 Jan 21. Review.

PMID:
31980411
11.

Paragraph: a graph-based structural variant genotyper for short-read sequence data.

Chen S, Krusche P, Dolzhenko E, Sherman RM, Petrovski R, Schlesinger F, Kirsche M, Bentley DR, Schatz MC, Sedlazeck FJ, Eberle MA.

Genome Biol. 2019 Dec 19;20(1):291. doi: 10.1186/s13059-019-1909-7.

12.

Recovering rearranged cancer chromosomes from karyotype graphs.

Aganezov S, Zban I, Aksenov V, Alexeev N, Schatz MC.

BMC Bioinformatics. 2019 Dec 17;20(Suppl 20):641. doi: 10.1186/s12859-019-3208-4.

13.

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.

Souza GM, Van Sluys MA, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira MM, Ferreira SS, Nishiyama MY, Ten-Caten F, Ragagnin GT, Andrade PM, de Souza RF, Nicastro GG, Pandya R, Kim C, Guo H, Durham AM, Carneiro MS, Zhang J, Zhang X, Zhang Q, Ming R, Schatz MC, Davidson B, Paterson AH, Heckerman D.

Gigascience. 2019 Dec 1;8(12). pii: giz129. doi: 10.1093/gigascience/giz129.

14.

Real-World Assessment of Asthma Control and Severity in Children, Adolescents, and Adults with Asthma: Relationships to Care Settings and Comorbidities.

Nyenhuis SM, Akkoyun E, Liu L, Schatz M, Casale TB.

J Allergy Clin Immunol Pract. 2020 Mar;8(3):989-996.e1. doi: 10.1016/j.jaip.2019.10.032. Epub 2019 Nov 7.

PMID:
31707065
15.

RaGOO: fast and accurate reference-guided scaffolding of draft genomes.

Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC.

Genome Biol. 2019 Oct 28;20(1):224. doi: 10.1186/s13059-019-1829-6.

16.

The bracteatus pineapple genome and domestication of clonally propagated crops.

Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R.

Nat Genet. 2019 Oct;51(10):1549-1558. doi: 10.1038/s41588-019-0506-8. Epub 2019 Sep 30.

PMID:
31570895
17.

Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda.

Pigeyre L, Schatz M, Ravallec M, Gasmi L, Nègre N, Clouet C, Seveno M, El Koulali K, Decourcelle M, Guerardel Y, Cot D, Dupressoir T, Gosselin-Grenet AS, Ogliastro M.

Viruses. 2019 Sep 17;11(9). pii: E870. doi: 10.3390/v11090870.

18.

Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana.

Goldman JAL, Schatz MJ, Berthiaume CT, Coesel SN, Orellana MV, Armbrust EV.

PLoS One. 2019 Sep 11;14(9):e0222325. doi: 10.1371/journal.pone.0222325. eCollection 2019.

19.

Heteroclinic and homoclinic connections in a Kolmogorov-like flow.

Suri B, Pallantla RK, Schatz MF, Grigoriev RO.

Phys Rev E. 2019 Jul;100(1-1):013112. doi: 10.1103/PhysRevE.100.013112.

PMID:
31499915
20.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Oct;37(10):1155-1162. doi: 10.1038/s41587-019-0217-9. Epub 2019 Aug 12.

21.

Analysis of Lipid Droplet Content in Fission and Budding Yeasts using Automated Image Processing.

Princová J, Schätz M, Ťupa O, Převorovský M.

J Vis Exp. 2019 Jul 17;(149). doi: 10.3791/59889.

PMID:
31380845
22.

Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato.

Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB.

Nat Plants. 2019 Aug;5(8):903. doi: 10.1038/s41477-019-0488-7.

PMID:
31292536
23.

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.

Darby CA, Fitch JR, Brennan PJ, Kelly BJ, Bir N, Magrini V, Leonard J, Cottrell CE, Gastier-Foster JM, Wilson RK, Mardis ER, White P, Langmead B, Schatz MC.

iScience. 2019 Aug 30;18:1-10. doi: 10.1016/j.isci.2019.05.037. Epub 2019 May 29.

24.

Poorly Controlled Asthma During Pregnancy Remains Common in the United States.

Cohen JM, Bateman BT, Huybrechts KF, Mogun H, Yland J, Schatz M, Wurst KE, Hernandez-Diaz S.

J Allergy Clin Immunol Pract. 2019 Nov - Dec;7(8):2672-2680.e10. doi: 10.1016/j.jaip.2019.05.043. Epub 2019 Jun 28.

PMID:
31257187
25.

Evaluation of EGFR inhibitor-mediated acneiform skin toxicity within the double-blind randomized EVITA trial: A thorough gender-specific analysis using the WoMo score.

Gaiser MR, Lorenzen S, Merx K, Trojan J, Ocvirk J, Ettrich TJ, Al-Batran SE, Schulz H, Homann N, Feustel HP, Schatz M, Kripp M, Schulte N, Heeger S, Vlassak S, Koch W, Hofheinz RD.

Cancer Med. 2019 Aug;8(9):4169-4175. doi: 10.1002/cam4.2132. Epub 2019 Jun 14.

26.

Using Temporal Features to Provide Data-Driven Clinical Early Warnings for Chronic Obstructive Pulmonary Disease and Asthma Care Management: Protocol for a Secondary Analysis.

Luo G, Stone BL, Koebnick C, He S, Au DH, Sheng X, Murtaugh MA, Sward KA, Schatz M, Zeiger RS, Davidson GH, Nkoy FL.

JMIR Res Protoc. 2019 Jun 6;8(6):e13783. doi: 10.2196/13783.

27.

Correlations between the leading Lyapunov vector and pattern defects for chaotic Rayleigh-Bénard convection.

Levanger R, Xu M, Cyranka J, Schatz MF, Mischaikow K, Paul MR.

Chaos. 2019 May;29(5):053103. doi: 10.1063/1.5071468.

PMID:
31154776
28.

Addressing confounding artifacts in reconstruction of gene co-expression networks.

Parsana P, Ruberman C, Jaffe AE, Schatz MC, Battle A, Leek JT.

Genome Biol. 2019 May 16;20(1):94. doi: 10.1186/s13059-019-1700-9.

29.

Hypo-osmotic-like stress underlies general cellular defects of aneuploidy.

Tsai HJ, Nelliat AR, Choudhury MI, Kucharavy A, Bradford WD, Cook ME, Kim J, Mair DB, Sun SX, Schatz MC, Li R.

Nature. 2019 Jun;570(7759):117-121. doi: 10.1038/s41586-019-1187-2. Epub 2019 May 8.

30.

Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato.

Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB.

Nat Plants. 2019 May;5(5):471-479. doi: 10.1038/s41477-019-0422-z. Epub 2019 May 6. Erratum in: Nat Plants. 2019 Aug;5(8):903.

PMID:
31061537
31.
32.

Asthma prevalence among women aged 18 to 44 in the United States: National health and nutrition examination survey 2001-2016.

Flores KF, Bandoli G, Chambers CD, Schatz M, Palmsten K.

J Asthma. 2019 Apr 24:1-10. doi: 10.1080/02770903.2019.1602874. [Epub ahead of print]

PMID:
31014137
33.

A master regulator of regeneration.

Alonge M, Schatz MC.

Science. 2019 Mar 15;363(6432):1152-1153. doi: 10.1126/science.aaw6258. No abstract available.

PMID:
30872508
34.

A multi-task convolutional deep neural network for variant calling in single molecule sequencing.

Luo R, Sedlazeck FJ, Lam TW, Schatz MC.

Nat Commun. 2019 Mar 1;10(1):998. doi: 10.1038/s41467-019-09025-z.

35.

Graph genomes article collection.

Schatz MC, Cosgrove A.

Genome Biol. 2019 Feb 1;20(1):25. doi: 10.1186/s13059-019-1636-0. No abstract available.

36.

Controversies in drug allergy: Consensus documents from the world experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

J Allergy Clin Immunol. 2019 Jan;143(1):82-83. doi: 10.1016/j.jaci.2018.10.014. No abstract available.

PMID:
30612666
37.

Controversies in drug allergy: consensus documents from the world experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

World Allergy Organ J. 2018 Dec 19;11(1):41. doi: 10.1186/s40413-018-0223-2. eCollection 2018. No abstract available.

38.

Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16.

Wang Z, Ma K, Pitts S, Cheng Y, Liu X, Ke X, Kovaka S, Ashktorab H, Smoot DT, Schatz M, Wang Z, Meltzer SJ.

Endocr Relat Cancer. 2019 Mar;26(3):265-277. doi: 10.1530/ERC-18-0478.

PMID:
30576282
39.

Controversies in Drug Allergy: Consensus Documents From the World Experts.

Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK.

J Allergy Clin Immunol Pract. 2019 Jan;7(1):66-67. doi: 10.1016/j.jaip.2018.10.012. Epub 2018 Dec 18. No abstract available.

PMID:
30573420
40.

The Journal of Allergy and Clinical Immunology: In Practice 2018 Highlights.

Schatz M, Sicherer SH, Khan D, Zeiger RS.

J Allergy Clin Immunol Pract. 2019 Feb;7(2):393-411. doi: 10.1016/j.jaip.2018.12.007. Epub 2018 Dec 15. Review.

PMID:
30557718
41.

Parrot Genomes and the Evolution of Heightened Longevity and Cognition.

Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, Aleixo A, Schneider MPC, Jarvis ED, Vasconcelos ATR, Prosdocimi F, Mello CV.

Curr Biol. 2018 Dec 17;28(24):4001-4008.e7. doi: 10.1016/j.cub.2018.10.050. Epub 2018 Dec 6.

42.

Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish.

Dennenmoser S, Sedlazeck FJ, Schatz MC, Altmüller J, Zytnicki M, Nolte AW.

Mol Ecol. 2019 Mar;28(6):1491-1505. doi: 10.1111/mec.14969. Epub 2019 Feb 6.

PMID:
30520198
43.

Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children.

Mirzakhani H, Carey VJ, Zeiger R, Bacharier LB, O'Connor GT, Schatz MX, Laranjo N, Weiss ST, Litonjua AA.

Clin Exp Allergy. 2019 Apr;49(4):419-429. doi: 10.1111/cea.13320. Epub 2019 Jan 3.

44.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Dec;50(12):1754. doi: 10.1038/s41588-018-0293-7.

PMID:
30425353
45.

Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates.

Tamma PD, Fan Y, Bergman Y, Pertea G, Kazmi AQ, Lewis S, Carroll KC, Schatz MC, Timp W, Simner PJ.

Antimicrob Agents Chemother. 2018 Dec 21;63(1). pii: e01923-18. doi: 10.1128/AAC.01923-18. Print 2019 Jan.

46.

The HEDIS Medication Management for People with Asthma measure is not associated with improved asthma outcomes.

Desai SH, Crawford WW, Sheikh J, Li ZQ, Chen W, Gong A, Vogel R, Schatz M.

J Allergy Clin Immunol Pract. 2019 Apr;7(4):1327-1329.e8. doi: 10.1016/j.jaip.2018.10.015. Epub 2018 Oct 25. No abstract available.

PMID:
30368008
47.

Needs assessment survey for a food allergy control tool.

Lippner E, Sicherer SH, Land MH, Schatz M, Dinakar C.

J Allergy Clin Immunol Pract. 2019 Feb;7(2):701-703.e2. doi: 10.1016/j.jaip.2018.09.035. Epub 2018 Oct 11. No abstract available.

PMID:
30317004
48.

Vitamin K1 cream significantly reduces incidence and severity of cetuximab-related acneiform skin rash in women: a post hoc analysis of the EVITA trial.

Gaiser MR, Lorenzen S, Merx K, Trojan J, Ocvirk J, Ettrich TJ, Al-Batran SE, Schulz H, Homann N, Feustel HP, Schatz M, Kripp M, Schulte N, Heeger S, Vlassak S, Koch W, Hofheinz RD.

Ann Oncol. 2018 Dec 1;29(12):2393-2395. doi: 10.1093/annonc/mdy451. No abstract available.

49.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Erratum in: Nat Genet. 2018 Dec;50(12):1754.

PMID:
30297971
50.

Antifungal Polyamides of Hydroxycinnamic Acids from Sunflower Bee Pollen.

Kyselka J, Bleha R, Dragoun M, Bialasová K, Horáčková Š, Schätz M, Sluková M, Filip V, Synytsya A.

J Agric Food Chem. 2018 Oct 24;66(42):11018-11026. doi: 10.1021/acs.jafc.8b03976. Epub 2018 Oct 15.

PMID:
30296072

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