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Items: 7

1.

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.

Dengjel J, Høyer-Hansen M, Nielsen MO, Eisenberg T, Harder LM, Schandorff S, Farkas T, Kirkegaard T, Becker AC, Schroeder S, Vanselow K, Lundberg E, Nielsen MM, Kristensen AR, Akimov V, Bunkenborg J, Madeo F, Jäättelä M, Andersen JS.

Mol Cell Proteomics. 2012 Mar;11(3):M111.014035. doi: 10.1074/mcp.M111.014035. Epub 2012 Feb 6.

2.

Ordered organelle degradation during starvation-induced autophagy.

Kristensen AR, Schandorff S, Høyer-Hansen M, Nielsen MO, Jäättelä M, Dengjel J, Andersen JS.

Mol Cell Proteomics. 2008 Dec;7(12):2419-28. doi: 10.1074/mcp.M800184-MCP200. Epub 2008 Aug 6.

3.

A mass spectrometry-friendly database for cSNP identification.

Schandorff S, Olsen JV, Bunkenborg J, Blagoev B, Zhang Y, Andersen JS, Mann M.

Nat Methods. 2007 Jun;4(6):465-6. No abstract available.

PMID:
17538625
4.

Bioinformatics for proteomics.

Ahrens C, Jespersen H, Schandorff S.

Methods Biochem Anal. 2005;45:249-72. Review. No abstract available.

PMID:
19235299
5.

Experimental Peptide Identification Repository (EPIR): an integrated peptide-centric platform for validation and mining of tandem mass spectrometry data.

Kristensen DB, Brønd JC, Nielsen PA, Andersen JR, Sørensen OT, Jørgensen V, Budin K, Matthiesen J, Venø P, Jespersen HM, Ahrens CH, Schandorff S, Ruhoff PT, Wisniewski JR, Bennett KL, Podtelejnikov AV.

Mol Cell Proteomics. 2004 Oct;3(10):1023-38. Epub 2004 Jul 29.

6.

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sørensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, Tyers M.

Nature. 2002 Jan 10;415(6868):180-3.

PMID:
11805837
7.

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome.

Croft L, Schandorff S, Clark F, Burrage K, Arctander P, Mattick JS.

Nat Genet. 2000 Apr;24(4):340-1. No abstract available.

PMID:
10742092

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