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Items: 15

1.

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.

Schaerli Y, Jiménez A, Duarte JM, Mihajlovic L, Renggli J, Isalan M, Sharpe J, Wagner A.

Mol Syst Biol. 2018 Sep 10;14(9):e8102. doi: 10.15252/msb.20178102.

2.

Bacterial Microcolonies in Gel Beads for High-throughput Screening.

Schaerli Y.

Bio Protoc. 2018 Jul 5;8(13). pii: e2911. doi: 10.21769/BioProtoc.2911.

3.

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

Perez-Carrasco R, Barnes CP, Schaerli Y, Isalan M, Briscoe J, Page KM.

Cell Syst. 2018 Apr 25;6(4):521-530.e3. doi: 10.1016/j.cels.2018.02.008. Epub 2018 Mar 21.

4.

Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.

Duarte JM, Barbier I, Schaerli Y.

ACS Synth Biol. 2017 Nov 17;6(11):1988-1995. doi: 10.1021/acssynbio.7b00111. Epub 2017 Aug 21.

PMID:
28803463
5.

The propagation of perturbations in rewired bacterial gene networks.

Baumstark R, Hänzelmann S, Tsuru S, Schaerli Y, Francesconi M, Mancuso FM, Castelo R, Isalan M.

Nat Commun. 2015 Dec 16;6:10105. doi: 10.1038/ncomms10105.

6.

A split intein T7 RNA polymerase for transcriptional AND-logic.

Schaerli Y, Gili M, Isalan M.

Nucleic Acids Res. 2014 Oct 29;42(19):12322-8. doi: 10.1093/nar/gku884. Epub 2014 Sep 27.

7.

A unified design space of synthetic stripe-forming networks.

Schaerli Y, Munteanu A, Gili M, Cotterell J, Sharpe J, Isalan M.

Nat Commun. 2014 Sep 23;5:4905. doi: 10.1038/ncomms5905.

8.

Evolution of enzyme catalysts caged in biomimetic gel-shell beads.

Fischlechner M, Schaerli Y, Mohamed MF, Patil S, Abell C, Hollfelder F.

Nat Chem. 2014 Sep;6(9):791-6. doi: 10.1038/nchem.1996. Epub 2014 Jul 20.

PMID:
25143214
9.

In vitro affinity screening of protein and peptide binders by megavalent bead surface display.

Diamante L, Gatti-Lafranconi P, Schaerli Y, Hollfelder F.

Protein Eng Des Sel. 2013 Oct;26(10):713-24. doi: 10.1093/protein/gzt039. Epub 2013 Aug 26.

10.

Building synthetic gene circuits from combinatorial libraries: screening and selection strategies.

Schaerli Y, Isalan M.

Mol Biosyst. 2013 Jul;9(7):1559-67. doi: 10.1039/c2mb25483b. Epub 2013 Jan 23. Review.

PMID:
23340599
11.

Isothermal DNA amplification using the T4 replisome: circular nicking endonuclease-dependent amplification and primase-based whole-genome amplification.

Schaerli Y, Stein V, Spiering MM, Benkovic SJ, Abell C, Hollfelder F.

Nucleic Acids Res. 2010 Dec;38(22):e201. doi: 10.1093/nar/gkq795. Epub 2010 Oct 4.

12.

Microdroplets in microfluidics: an evolving platform for discoveries in chemistry and biology.

Theberge AB, Courtois F, Schaerli Y, Fischlechner M, Abell C, Hollfelder F, Huck WT.

Angew Chem Int Ed Engl. 2010 Aug 9;49(34):5846-68. doi: 10.1002/anie.200906653. Review.

PMID:
20572214
13.

The potential of microfluidic water-in-oil droplets in experimental biology.

Schaerli Y, Hollfelder F.

Mol Biosyst. 2009 Dec;5(12):1392-404. doi: 10.1039/b907578j. Epub 2009 Oct 12. Review.

PMID:
20023716
14.

Removal of background signals from fluorescence thermometry measurements in PDMS microchannels using fluorescence lifetime imaging.

Robinson T, Schaerli Y, Wootton R, Hollfelder F, Dunsby C, Baldwin G, Neil M, French P, deMello A.

Lab Chip. 2009 Dec 7;9(23):3437-41. doi: 10.1039/b913293g. Epub 2009 Sep 24.

PMID:
19904413
15.

Continuous-flow polymerase chain reaction of single-copy DNA in microfluidic microdroplets.

Schaerli Y, Wootton RC, Robinson T, Stein V, Dunsby C, Neil MA, French PM, Demello AJ, Abell C, Hollfelder F.

Anal Chem. 2009 Jan 1;81(1):302-6. doi: 10.1021/ac802038c.

PMID:
19055421

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