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Items: 1 to 50 of 53

1.

Genome evolution across 1,011 Saccharomyces cerevisiae isolates.

Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J.

Nature. 2018 Apr;556(7701):339-344. doi: 10.1038/s41586-018-0030-5. Epub 2018 Apr 11.

PMID:
29643504
2.

Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution.

Avramova M, Cibrario A, Peltier E, Coton M, Coton E, Schacherer J, Spano G, Capozzi V, Blaiotta G, Salin F, Dols-Lafargue M, Grbin P, Curtin C, Albertin W, Masneuf-Pomarede I.

Sci Rep. 2018 Mar 7;8(1):4136. doi: 10.1038/s41598-018-22580-7.

3.

How conceptual overlap and modality pairings affect task-switching and mixing costs.

Schacherer J, Hazeltine E.

Psychol Res. 2017 Oct 17. doi: 10.1007/s00426-017-0932-0. [Epub ahead of print]

PMID:
29043435
4.

High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing.

Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J, Friedrich A.

G3 (Bethesda). 2017 Oct 5;7(10):3243-3250. doi: 10.1534/g3.117.300128.

5.

Genetic backgrounds and hidden trait complexity in natural populations.

Fournier T, Schacherer J.

Curr Opin Genet Dev. 2017 Dec;47:48-53. doi: 10.1016/j.gde.2017.08.009. Epub 2017 Sep 12. Review.

PMID:
28915487
6.

Yeast-bacteria competition induced new metabolic traits through large-scale genomic rearrangements in Lachancea kluyveri.

Zhou N, Bottagisi S, Katz M, Schacherer J, Friedrich A, Gojkovic Z, Swamy KBS, Knecht W, Compagno C, Piškur J.

FEMS Yeast Res. 2017 Sep 1;17(6). doi: 10.1093/femsyr/fox060.

PMID:
28910985
7.

Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C.

Smukowski Heil C, Burton JN, Liachko I, Friedrich A, Hanson NA, Morris CL, Schacherer J, Shendure J, Thomas JH, Dunham MJ.

Yeast. 2018 Jan;35(1):71-84. doi: 10.1002/yea.3280. Epub 2017 Oct 19.

PMID:
28892574
8.

Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts.

Brion C, Legrand S, Peter J, Caradec C, Pflieger D, Hou J, Friedrich A, Llorente B, Schacherer J.

PLoS Genet. 2017 Aug 1;13(8):e1006917. doi: 10.1371/journal.pgen.1006917. eCollection 2017 Aug.

9.

Phenotypic Diagnosis of Lineage and Differentiation During Sake Yeast Breeding.

Ohnuki S, Okada H, Friedrich A, Kanno Y, Goshima T, Hasuda H, Inahashi M, Okazaki N, Tamura H, Nakamura R, Hirata D, Fukuda H, Shimoi H, Kitamoto K, Watanabe D, Schacherer J, Akao T, Ohya Y.

G3 (Bethesda). 2017 Aug 7;7(8):2807-2820. doi: 10.1534/g3.117.044099.

10.

Separating the effect of reward from corrective feedback during learning in patients with Parkinson's disease.

Freedberg M, Schacherer J, Chen KH, Uc EY, Narayanan NS, Hazeltine E.

Cogn Affect Behav Neurosci. 2017 Jun;17(3):678-695. doi: 10.3758/s13415-017-0505-0.

PMID:
28397140
11.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM.

Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018.

12.

Mismatch Repair Incompatibilities in Diverse Yeast Populations.

Bui DT, Friedrich A, Al-Sweel N, Liti G, Schacherer J, Aquadro CF, Alani E.

Genetics. 2017 Apr;205(4):1459-1471. doi: 10.1534/genetics.116.199513. Epub 2017 Feb 13.

13.

Fitness Trade-Offs Lead to Suppressor Tolerance in Yeast.

Hou J, Schacherer J.

Mol Biol Evol. 2017 Jan;34(1):110-118. doi: 10.1093/molbev/msw225. Epub 2016 Oct 20.

14.

The Hidden Complexity of Mendelian Traits across Natural Yeast Populations.

Hou J, Sigwalt A, Fournier T, Pflieger D, Peter J, de Montigny J, Dunham MJ, Schacherer J.

Cell Rep. 2016 Jul 26;16(4):1106-1114. doi: 10.1016/j.celrep.2016.06.048. Epub 2016 Jul 7.

15.

Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species.

Sigwalt A, Caradec C, Brion C, Hou J, de Montigny J, Jung P, Fischer G, Llorente B, Friedrich A, Schacherer J.

FEMS Yeast Res. 2016 Aug;16(5). pii: fow056. doi: 10.1093/femsyr/fow056. Epub 2016 Jul 2.

PMID:
27371856
16.

Beyond the simplicity of Mendelian inheritance.

Schacherer J.

C R Biol. 2016 Jul-Aug;339(7-8):284-8. doi: 10.1016/j.crvi.2016.04.006. Epub 2016 Jun 22. Review.

17.

Species-wide survey reveals the various flavors of intraspecific reproductive isolation in yeast.

Hou J, Fournier T, Schacherer J.

FEMS Yeast Res. 2016 Aug;16(5). pii: fow048. doi: 10.1093/femsyr/fow048. Epub 2016 Jun 9. Review.

18.

Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G.

Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116. Epub 2016 May 31.

19.

Differences in environmental stress response among yeasts is consistent with species-specific lifestyles.

Brion C, Pflieger D, Souali-Crespo S, Friedrich A, Schacherer J.

Mol Biol Cell. 2016 May 15;27(10):1694-705. doi: 10.1091/mbc.E15-12-0816. Epub 2016 Mar 23.

20.

Large-Scale Survey of Intraspecific Fitness and Cell Morphology Variation in a Protoploid Yeast Species.

Jung PP, Sigwalt A, Ohnuki S, de Montigny J, Ohya Y, Schacherer J.

G3 (Bethesda). 2016 Apr 7;6(4):1063-71. doi: 10.1534/g3.115.026682.

21.

Whole-Genome Sequencing and Intraspecific Analysis of the Yeast Species Lachancea quebecensis.

Freel KC, Friedrich A, Sarilar V, Devillers H, Neuvéglise C, Schacherer J.

Genome Biol Evol. 2016 Jan 5;8(3):733-41. doi: 10.1093/gbe/evv262.

22.

Population genomics of yeasts: towards a comprehensive view across a broad evolutionary scale.

Peter J, Schacherer J.

Yeast. 2016 Mar;33(3):73-81. doi: 10.1002/yea.3142. Epub 2016 Jan 19. Review.

23.

Incidental learning of rewarded associations bolsters learning on an associative task.

Freedberg M, Schacherer J, Hazeltine E.

J Exp Psychol Learn Mem Cogn. 2016 May;42(5):786-803. doi: 10.1037/xlm0000201. Epub 2015 Nov 16.

PMID:
26569435
24.

On the Mapping of Epistatic Genetic Interactions in Natural Isolates: Combining Classical Genetics and Genomics.

Hou J, Schacherer J.

Methods Mol Biol. 2016;1361:345-60. doi: 10.1007/978-1-4939-3079-1_19.

PMID:
26483031
25.

Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Québec.

Freel KC, Charron G, Leducq JB, Landry CR, Schacherer J.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3392-9. doi: 10.1099/ijsem.0.000426.

PMID:
26297665
26.

Negative epistasis: a route to intraspecific reproductive isolation in yeast?

Hou J, Schacherer J.

Curr Genet. 2016 Feb;62(1):25-9. doi: 10.1007/s00294-015-0505-y. Epub 2015 Jul 12. Review.

27.

Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast.

Hou J, Friedrich A, Gounot JS, Schacherer J.

Nat Commun. 2015 May 26;6:7214. doi: 10.1038/ncomms8214.

28.

Mitochondrial genome evolution in yeasts: an all-encompassing view.

Freel KC, Friedrich A, Schacherer J.

FEMS Yeast Res. 2015 Jun;15(4):fov023. doi: 10.1093/femsyr/fov023. Epub 2015 May 11. Review.

PMID:
25969454
29.

Evolution of intraspecific transcriptomic landscapes in yeasts.

Brion C, Pflieger D, Friedrich A, Schacherer J.

Nucleic Acids Res. 2015 May 19;43(9):4558-68. doi: 10.1093/nar/gkv363. Epub 2015 Apr 20.

30.

Draft Genome Sequence of Lachancea lanzarotensis CBS 12615T, an Ascomycetous Yeast Isolated from Grapes.

Sarilar V, Devillers H, Freel KC, Schacherer J, Neuvéglise C.

Genome Announc. 2015 Apr 16;3(2). pii: e00292-15. doi: 10.1128/genomeA.00292-15.

31.

Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast.

Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J.

Mol Biol Evol. 2015 Jan;32(1):184-92. doi: 10.1093/molbev/msu295. Epub 2014 Oct 27.

32.

Population genomic analysis reveals highly conserved mitochondrial genomes in the yeast species Lachancea thermotolerans.

Freel KC, Friedrich A, Hou J, Schacherer J.

Genome Biol Evol. 2014 Sep 11;6(10):2586-94. doi: 10.1093/gbe/evu203.

33.

Genome Sequence of the Yeast Cyberlindnera fabianii (Hansenula fabianii).

Freel KC, Sarilar V, Neuvéglise C, Devillers H, Friedrich A, Schacherer J.

Genome Announc. 2014 Aug 7;2(4). pii: e00638-14. doi: 10.1128/genomeA.00638-14.

34.

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.

Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

35.

Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae.

Hou J, Friedrich A, de Montigny J, Schacherer J.

Curr Biol. 2014 May 19;24(10):1153-9. doi: 10.1016/j.cub.2014.03.063. Epub 2014 May 8.

36.

Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast.

Yvert G, Ohnuki S, Nogami S, Imanaga Y, Fehrmann S, Schacherer J, Ohya Y.

BMC Syst Biol. 2013 Jul 3;7:54. doi: 10.1186/1752-0509-7-54.

37.

Genome-wide analysis of intraspecific transposon diversity in yeast.

Bleykasten-Grosshans C, Friedrich A, Schacherer J.

BMC Genomics. 2013 Jun 14;14:399. doi: 10.1186/1471-2164-14-399.

38.

Genetic Basis of Ammonium Toxicity Resistance in a Sake Strain of Yeast: A Mendelian Case.

Reisser C, Dick C, Kruglyak L, Botstein D, Schacherer J, Hess DC.

G3 (Bethesda). 2013 Apr 9;3(4):733-740. doi: 10.1534/g3.113.005884.

39.

Comparative mitochondrial genomics within and among yeast species of the Lachancea genus.

Friedrich A, Jung PP, Hou J, Neuvéglise C, Schacherer J.

PLoS One. 2012;7(10):e47834. doi: 10.1371/journal.pone.0047834. Epub 2012 Oct 24.

40.

Mitochondrial genome evolution in a single protoploid yeast species.

Jung PP, Friedrich A, Reisser C, Hou J, Schacherer J.

G3 (Bethesda). 2012 Sep;2(9):1103-11. doi: 10.1534/g3.112.003152. Epub 2012 Sep 1.

41.

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization.

Louis VL, Despons L, Friedrich A, Martin T, Durrens P, Casarégola S, Neuvéglise C, Fairhead C, Marck C, Cruz JA, Straub ML, Kugler V, Sacerdot C, Uzunov Z, Thierry A, Weiss S, Bleykasten C, De Montigny J, Jacques N, Jung P, Lemaire M, Mallet S, Morel G, Richard GF, Sarkar A, Savel G, Schacherer J, Seret ML, Talla E, Samson G, Jubin C, Poulain J, Vacherie B, Barbe V, Pelletier E, Sherman DJ, Westhof E, Weissenbach J, Baret PV, Wincker P, Gaillardin C, Dujon B, Souciet JL.

G3 (Bethesda). 2012 Feb;2(2):299-311. doi: 10.1534/g3.111.000745. Epub 2012 Feb 1.

42.

The rise of yeast population genomics.

Liti G, Schacherer J.

C R Biol. 2011 Aug-Sep;334(8-9):612-9. doi: 10.1016/j.crvi.2011.05.009. Epub 2011 Jul 1. Review.

PMID:
21819942
43.

Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae.

Jung PP, Fritsch ES, Blugeon C, Souciet JL, Potier S, Lemoine S, Schacherer J, de Montigny J.

BMC Genomics. 2011 Jun 28;12:331. doi: 10.1186/1471-2164-12-331.

44.

Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species.

Jung PP, Friedrich A, Souciet JL, Louis V, Potier S, de Montigny J, Schacherer J.

Curr Genet. 2010 Dec;56(6):507-15. doi: 10.1007/s00294-010-0318-y. Epub 2010 Sep 10.

PMID:
20830585
45.

The complete mitochondrial genome of the yeast Pichia sorbitophila.

Jung PP, Schacherer J, Souciet JL, Potier S, Wincker P, de Montigny J.

FEMS Yeast Res. 2009 Sep;9(6):903-10. doi: 10.1111/j.1567-1364.2009.00540.x. Epub 2009 Jun 12.

46.

Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae.

Fritsch ES, Schacherer J, Bleykasten-Grosshans C, Souciet JL, Potier S, de Montigny J.

BMC Genomics. 2009 Mar 6;10:99. doi: 10.1186/1471-2164-10-99.

47.

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae.

Schacherer J, Shapiro JA, Ruderfer DM, Kruglyak L.

Nature. 2009 Mar 19;458(7236):342-5. doi: 10.1038/nature07670. Epub 2009 Feb 11.

48.

Spontaneous duplications in diploid Saccharomyces cerevisiae cells.

Schacherer J, Tourrette Y, Potier S, Souciet JL, de Montigny J.

DNA Repair (Amst). 2007 Oct 1;6(10):1441-52. Epub 2007 Jun 4.

PMID:
17544927
49.

Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy.

Tourrette Y, Schacherer J, Fritsch E, Potier S, Souciet JL, de Montigny J.

Mol Microbiol. 2007 Apr;64(2):382-95.

50.

Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains.

Schacherer J, Ruderfer DM, Gresham D, Dolinski K, Botstein D, Kruglyak L.

PLoS One. 2007 Mar 28;2(3):e322.

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