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Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel aspects of Mycobacterium avium subspecies paratuberculosis infections.

Gupta P, Peter S, Jung M, Lewin A, Hemmrich-Stanisak G, Franke A, von Kleist M, Schütte C, Einspanier R, Sharbati S, Bruegge JZ.

Sci Rep. 2019 Feb 7;9(1):1571. doi: 10.1038/s41598-018-38141-x.


EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma.

Shao B, Bjaanæs MM, Helland Å, Schütte C, Conrad T.

PLoS One. 2019 Jan 31;14(1):e0204186. doi: 10.1371/journal.pone.0204186. eCollection 2019.


A kernel-based approach to molecular conformation analysis.

Klus S, Bittracher A, Schuster I, Schütte C.

J Chem Phys. 2018 Dec 28;149(24):244109. doi: 10.1063/1.5063533.


Voluntary medical male circumcision service delivery in South Africa: The economic costs and potential opportunity for private sector involvement.

Tchuenche M, Njeuhmeli E, Schütte C, Ngubeni L, Choge I, Martin E, Loykissoonlal D, Kiggundu V, Yansaneh A, Forsythe S.

PLoS One. 2018 Dec 17;13(12):e0208698. doi: 10.1371/journal.pone.0208698. eCollection 2018.


Data-driven computation of molecular reaction coordinates.

Bittracher A, Banisch R, Schütte C.

J Chem Phys. 2018 Oct 21;149(15):154103. doi: 10.1063/1.5035183.


Differentiating poor validity from probable impairment on the medical symptom validity test: a cross-validation study.

Morin RT, Axelrod BN, Reslan S, Schutte C.

Int J Neurosci. 2019 Mar;129(3):217-224. doi: 10.1080/00207454.2018.1526800. Epub 2018 Nov 28.


External validation of computed tomography decision rules for minor head injury: prospective, multicentre cohort study in the Netherlands.

Foks KA, van den Brand CL, Lingsma HF, van der Naalt J, Jacobs B, de Jong E, den Boogert HF, Sir Ö, Patka P, Polinder S, Gaakeer MI, Schutte CE, Jie KE, Visee HF, Hunink MGM, Reijners E, Braaksma M, Schoonman GG, Steyerberg EW, Jellema K, Dippel DWJ.

BMJ. 2018 Aug 24;362:k3527. doi: 10.1136/bmj.k3527.


Brief Report: Implementation of a Specific Carbohydrate Diet for a Child with Autism Spectrum Disorder and Fragile X Syndrome.

Barnhill K, Devlin M, Moreno HT, Potts A, Richardson W, Schutte C, Hewitson L.

J Autism Dev Disord. 2018 Aug 3. doi: 10.1007/s10803-018-3704-9. [Epub ahead of print]


MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations.

Dibak M, Del Razo MJ, De Sancho D, Schütte C, Noé F.

J Chem Phys. 2018 Jun 7;148(21):214107. doi: 10.1063/1.5020294.


Filamentous Giant Beggiatoaceae from the Guaymas Basin Are Capable of both Denitrification and Dissimilatory Nitrate Reduction to Ammonium.

Schutte CA, Teske A, MacGregor BJ, Salman-Carvalho V, Lavik G, Hach P, de Beer D.

Appl Environ Microbiol. 2018 Jul 17;84(15). pii: e02860-17. doi: 10.1128/AEM.02860-17. Print 2018 Aug 1.


Cost and Cost-Effectiveness of a Demand Creation Intervention to Increase Uptake of Voluntary Medical Male Circumcision in Tanzania: Spending More to Spend Less.

Torres-Rueda S, Wambura M, Weiss HA, Plotkin M, Kripke K, Chilongani J, Mahler H, Kuringe E, Makokha M, Hellar A, Schutte C, Kazaura KJ, Simbeye D, Mshana G, Larke N, Lija G, Changalucha J, Vassall A, Hayes R, Grund JM, Terris-Prestholt F.

J Acquir Immune Defic Syndr. 2018 Jul 1;78(3):291-299. doi: 10.1097/QAI.0000000000001682.


Transition Manifolds of Complex Metastable Systems: Theory and Data-Driven Computation of Effective Dynamics.

Bittracher A, Koltai P, Klus S, Banisch R, Dellnitz M, Schütte C.

J Nonlinear Sci. 2018;28(2):471-512. doi: 10.1007/s00332-017-9415-0. Epub 2017 Oct 12.


The Relationship Between Social Affect and Restricted and Repetitive Behaviors Measured on the ADOS-2 and Maternal Stress.

Schutte C, Richardson W, Devlin M, Hill J, Ghossainy M, Hewitson L.

J Autism Dev Disord. 2018 Mar;48(3):751-758. doi: 10.1007/s10803-017-3453-1.


Hybrid models for chemical reaction networks: Multiscale theory and application to gene regulatory systems.

Winkelmann S, Schütte C.

J Chem Phys. 2017 Sep 21;147(11):114115. doi: 10.1063/1.4986560.


Bone Mineral Density in Boys Diagnosed with Autism Spectrum Disorder: A Case-Control Study.

Barnhill K, Ramirez L, Gutierrez A, Richardson W, Marti CN, Potts A, Shearer R, Schutte C, Hewitson L.

J Autism Dev Disord. 2017 Nov;47(11):3608-3619. doi: 10.1007/s10803-017-3277-z.


The spatiotemporal master equation: Approximation of reaction-diffusion dynamics via Markov state modeling.

Winkelmann S, Schütte C.

J Chem Phys. 2016 Dec 7;145(21):214107. doi: 10.1063/1.4971163.


Transient clinical improvement of a mitochondrial neurogastrointestinal encephalomyopathy-like syndrome after allogeneic haematopoietic stem cell transplantation.

Baker MK, Schutte CM, Ranchhod N, Brittain D, van Rensburg JE.

BMJ Case Rep. 2017 Aug 1;2017. pii: bcr-2016-218276. doi: 10.1136/bcr-2016-218276.


Role of bone morphogenetic proteins in sprouting angiogenesis: differential BMP receptor-dependent signaling pathways balance stalk vs. tip cell competence.

Benn A, Hiepen C, Osterland M, Schütte C, Zwijsen A, Knaus P.

FASEB J. 2017 Nov;31(11):4720-4733. doi: 10.1096/fj.201700193RR. Epub 2017 Jul 21.


Serum thyroid-stimulating hormone and interleukin-8 levels in boys with autism spectrum disorder.

Singh S, Yazdani U, Gadad B, Zaman S, Hynan LS, Roatch N, Schutte C, Marti CN, Hewitson L, German DC.

J Neuroinflammation. 2017 Jun 2;14(1):113. doi: 10.1186/s12974-017-0888-4.


Simulation, identification and statistical variation in cardiovascular analysis (SISCA) - A software framework for multi-compartment lumped modeling.

Huttary R, Goubergrits L, Schütte C, Bernhard S.

Comput Biol Med. 2017 Aug 1;87:104-123. doi: 10.1016/j.compbiomed.2017.05.021. Epub 2017 May 20.


Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing.

Stoll A, Harpke D, Schütte C, Stefanczyk N, Brandt R, Blattner FR, Quandt D.

PLoS One. 2017 Jun 2;12(6):e0178402. doi: 10.1371/journal.pone.0178402. eCollection 2017.


Set-free Markov state model building.

Weber M, Fackeldey K, Schütte C.

J Chem Phys. 2017 Mar 28;146(12):124133. doi: 10.1063/1.4978501.


Sparse Proteomics Analysis - a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data.

Conrad TO, Genzel M, Cvetkovic N, Wulkow N, Leichtle A, Vybiral J, Kutyniok G, Schütte C.

BMC Bioinformatics. 2017 Mar 9;18(1):160. doi: 10.1186/s12859-017-1565-4.


In silico cytotoxicity assessment on cultured rat intestinal cells deduced from cellular impedance measurements.

Gupta P, Gramatke A, Einspanier R, Schütte C, von Kleist M, Sharbati J.

Toxicol In Vitro. 2017 Jun;41:179-188. doi: 10.1016/j.tiv.2017.02.021. Epub 2017 Mar 2.


Familial cortical myoclonic tremor and epilepsy: Description of a new South African pedigree with 30 year follow up.

van Coller R, van Rootselaar AF, Schutte C, van der Meyden CH.

Parkinsonism Relat Disord. 2017 May;38:35-40. doi: 10.1016/j.parkreldis.2017.02.016. Epub 2017 Feb 21.


Hypothalamic-pituitary-adrenal-axis dysregulation and double product increases potentiate ischemic heart disease risk in a Black male cohort: the SABPA study.

Malan L, Schutte CE, Alkerwi A, Stranges S, Malan NT.

Hypertens Res. 2017 Jun;40(6):590-597. doi: 10.1038/hr.2017.5. Epub 2017 Feb 9.


Cortisol:brain-derived neurotrophic factor ratio associated with silent ischaemia in a black male cohort: the SA BPA study.

Schutte CE, Malan L, Scheepers JD, Oosthuizen W, Cockeran M, Malan NT.

Cardiovasc J Afr. 2016 Nov/Dec;27(6):387-391. doi: 10.5830/CVJA-2016-065.


New methods: general discussion.

Angulo G, Astumian RD, Beniwal V, Bolhuis PG, Dellago C, Ellis J, Ensing B, Glowacki DR, Hammes-Schiffer S, Kästner J, Lelièvre T, Makri N, Manolopoulos D, Menzl G, Miller TF, Mulholland A, Oprzeska-Zingrebe EA, Parrinello M, Pollak E, Proppe J, Reiher M, Richardson J, Roy Chowdhury P, Sanz E, Schütte C, Shalashilin D, Szabla R, Taraphder S, Tiwari A, Vanden-Eijnden E, Vijaykumar A, Zinovjev K.

Faraday Discuss. 2016 Dec 22;195:521-556. doi: 10.1039/C6FD90075E. No abstract available.


On metastability and Markov state models for non-stationary molecular dynamics.

Koltai P, Ciccotti G, Schütte C.

J Chem Phys. 2016 Nov 7;145(17):174103.


The prevalence of Culicoides spp. in 3 geographic areas of South Africa.

Mayo C, Venter E, Steyn J, Coetzee P, van Vuuren M, Crafford J, Schütte C, Venter G.

Vet Ital. 2016 Sep 30;52(3-4):281-289. doi: 10.12834/VetIt.494.2385.3.


Effective dynamics along given reaction coordinates, and reaction rate theory.

Zhang W, Hartmann C, Schütte C.

Faraday Discuss. 2016 Dec 22;195:365-394. doi: 10.1039/c6fd00147e.


Red-Brown Urine in a Patient with Chronic HIV Infection and Quadriparesis.

Oosthuizen NM, Olivier J, Martins J, Schutte C, Pillay TS.

Clin Chem. 2016 Sep;62(9):1181-4. doi: 10.1373/clinchem.2015.250746. No abstract available.


Costs of introducing pneumococcal, rotavirus and a second dose of measles vaccine into the Zambian immunisation programme: Are expansions sustainable?

Griffiths UK, Bozzani FM, Chansa C, Kinghorn A, Kalesha-Masumbu P, Rudd C, Chilengi R, Brenzel L, Schutte C.

Vaccine. 2016 Jul 29;34(35):4213-4220. doi: 10.1016/j.vaccine.2016.06.050. Epub 2016 Jun 28.


Comparative Cost Analysis of Surgical and PrePex Device Male Circumcision in Zimbabwe and Mozambique.

Schutte C, Tshimanga M, Mugurungi O, Come I, Necochea E, Mahomed M, Xaba S, Bossemeyer D, Ferreira T, Macaringue L, Chatikobo P, Gundididza P, Hatzold K.

J Acquir Immune Defic Syndr. 2016 Jun 1;72 Suppl 1:S96-S100. doi: 10.1097/QAI.0000000000000797.


Cryptococcal meningitis in a tertiary hospital in Pretoria, mortality and risk factors - A retrospective cohort study.

Hiesgen J, Schutte C, Olorunju S, Retief J.

Int J STD AIDS. 2017 Apr;28(5):480-485. doi: 10.1177/0956462416653559. Epub 2016 Jul 10.


Clinical findings and genetic screening for copy number variation mutations in a cohort of South African patients with Parkinson's disease.

Mahne AC, Carr JA, Bardien S, Schutte CM.

S Afr Med J. 2016 May 11;106(6). doi: 10.7196/SAMJ.2016.v106i6.10340.


Targeted Nutritional and Behavioral Feeding Intervention for a Child with Autism Spectrum Disorder.

Barnhill K, Tami A, Schutte C, Hewitson L, Olive ML.

Case Rep Psychiatry. 2016;2016:1420549. doi: 10.1155/2016/1420549. Epub 2016 Mar 9.


Discrepant Results of Experimental Human Mesenchymal Stromal Cell Therapy after Myocardial Infarction: Are Animal Models Robust Enough?

den Haan MC, van Zuylen VL, Pluijmert NJ, Schutte CI, Fibbe WE, Schalij MJ, Roelofs H, Atsma DE.

PLoS One. 2016 Apr 6;11(4):e0152938. doi: 10.1371/journal.pone.0152938. eCollection 2016.


Building Markov State Models for Periodically Driven Non-Equilibrium Systems.

Wang H, Schütte C.

J Chem Theory Comput. 2015 Apr 14;11(4):1819-31.


EPIC Studies: Governments Finance, On Average, More Than 50 Percent Of Immunization Expenses, 2010-11.

Brenzel L, Schütte C, Goguadze K, Valdez W, Le Gargasson JB, Guthrie T.

Health Aff (Millwood). 2016 Feb;35(2):259-65. doi: 10.1377/hlthaff.2015.1121.


Severe porphyric neuropathy--importance of screening for porphyria in Guillain-Barré syndrome.

Schutte CM, van der Meyden CH, van Niekerk L, Kakaza M, van Coller R, Ueckermann V, Oosthuizen NM.

S Afr Med J. 2015 Nov 20;106(1):44-7. doi: 10.7196/SAMJ.2016.v106i1.10118.


A Search for Blood Biomarkers for Autism: Peptoids.

Zaman S, Yazdani U, Deng Y, Li W, Gadad BS, Hynan L, Karp D, Roatch N, Schutte C, Nathan Marti C, Hewitson L, German DC.

Sci Rep. 2016 Jan 14;6:19164. doi: 10.1038/srep19164.


Influence of pH and sequence in peptide aggregation via molecular simulation.

Enciso M, Schütte C, Delle Site L.

J Chem Phys. 2015 Dec 28;143(24):243130. doi: 10.1063/1.4935707.


Basedow paraplegia: A possible misnomer.

Smith L, Kemp T, van der Meyden CH, Schutte CM.

S Afr Med J. 2015 Oct;105(10):875.


Neurocysticercosis in a rural population with extensive pig production in Angónia district, Tete Province, Mozambique.

Assane YA, Trevisan C, Schutte CM, Noormahomed EV, Johansen MV, Magnussen P.

Acta Trop. 2017 Jan;165:155-160. doi: 10.1016/j.actatropica.2015.10.018. Epub 2015 Oct 28.


Solution of the chemical master equation by radial basis functions approximation with interface tracking.

Kryven I, Röblitz S, Schütte C.

BMC Syst Biol. 2015 Oct 8;9:67. doi: 10.1186/s12918-015-0210-y.


A South African family with oculopharyngeal muscular dystrophy: Clinical and molecular genetic characteristics.

Schutte CM, Dorfling CM, van Coller R, Honey EM, van Rensburg EJ.

S Afr Med J. 2015 Sep 21;105(7):540-3. doi: 10.7196/SAMJnew.7880.


Groundwater controls ecological zonation of salt marsh macrophytes.

Wilson AM, Evans T, Moore W, Schutte CA, Joye SB, Hughes AH, Anderson JL.

Ecology. 2015 Mar;96(3):840-9.


Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli.

Yousef KP, Streck A, Schütte C, Siebert H, Hengge R, von Kleist M.

BMC Syst Biol. 2015 Jul 23;9:39. doi: 10.1186/s12918-015-0183-x.


Prevalence of cerebral amyloid pathology in persons without dementia: a meta-analysis.

Jansen WJ, Ossenkoppele R, Knol DL, Tijms BM, Scheltens P, Verhey FR, Visser PJ; Amyloid Biomarker Study Group, Aalten P, Aarsland D, Alcolea D, Alexander M, Almdahl IS, Arnold SE, Baldeiras I, Barthel H, van Berckel BN, Bibeau K, Blennow K, Brooks DJ, van Buchem MA, Camus V, Cavedo E, Chen K, Chetelat G, Cohen AD, Drzezga A, Engelborghs S, Fagan AM, Fladby T, Fleisher AS, van der Flier WM, Ford L, Förster S, Fortea J, Foskett N, Frederiksen KS, Freund-Levi Y, Frisoni GB, Froelich L, Gabryelewicz T, Gill KD, Gkatzima O, Gómez-Tortosa E, Gordon MF, Grimmer T, Hampel H, Hausner L, Hellwig S, Herukka SK, Hildebrandt H, Ishihara L, Ivanoiu A, Jagust WJ, Johannsen P, Kandimalla R, Kapaki E, Klimkowicz-Mrowiec A, Klunk WE, Köhler S, Koglin N, Kornhuber J, Kramberger MG, Van Laere K, Landau SM, Lee DY, de Leon M, Lisetti V, Lleó A, Madsen K, Maier W, Marcusson J, Mattsson N, de Mendonça A, Meulenbroek O, Meyer PT, Mintun MA, Mok V, Molinuevo JL, Møllergård HM, Morris JC, Mroczko B, Van der Mussele S, Na DL, Newberg A, Nordberg A, Nordlund A, Novak GP, Paraskevas GP, Parnetti L, Perera G, Peters O, Popp J, Prabhakar S, Rabinovici GD, Ramakers IH, Rami L, Resende de Oliveira C, Rinne JO, Rodrigue KM, Rodríguez-Rodríguez E, Roe CM, Rot U, Rowe CC, Rüther E, Sabri O, Sanchez-Juan P, Santana I, Sarazin M, Schröder J, Schütte C, Seo SW, Soetewey F, Soininen H, Spiru L, Struyfs H, Teunissen CE, Tsolaki M, Vandenberghe R, Verbeek MM, Villemagne VL, Vos SJ, van Waalwijk van Doorn LJ, Waldemar G, Wallin A, Wallin ÅK, Wiltfang J, Wolk DA, Zboch M, Zetterberg H.

JAMA. 2015 May 19;313(19):1924-38. doi: 10.1001/jama.2015.4668.

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