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Best matches for Schönbach C[au]:

A bioinformatics potpourri. Schönbach C et al. BMC Genomics. (2018)

Computational and bioinformatics techniques for immunology. Pappalardo F et al. Biomed Res Int. (2014)

The transcriptional landscape of the mammalian genome. Carninci P et al. Science. (2005)

Search results

Items: 1 to 50 of 73

1.

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.

Ahmad S, Gromiha MM, Raghava GPS, Schönbach C, Ranganathan S.

BMC Genomics. 2019 Apr 18;19(Suppl 9):266. doi: 10.1186/s12864-019-5582-8.

2.

Top soil physical and chemical properties in Kazakhstan across a north-south gradient.

Yapiyev V, Gilman CP, Kabdullayeva T, Suleimenova A, Shagadatova A, Duisembay A, Naizabekov S, Mussurova S, Sydykova K, Raimkulov I, Kabimoldayev I, Abdrakhmanova A, Omarkulova S, Nurmukhambetov D, Kudarova A, Malgazhdar D, Schönbach C, Inglezakis V.

Sci Data. 2018 Nov 13;5:180242. doi: 10.1038/sdata.2018.242.

3.

A bioinformatics potpourri.

Schönbach C, Li J, Ma L, Horton P, Sjaugi MF, Ranganathan S.

BMC Genomics. 2018 Jan 19;19(Suppl 1):920. doi: 10.1186/s12864-017-4326-x.

4.

Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016).

Schönbach C, Verma C, Bond PJ, Ranganathan S.

BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):524. doi: 10.1186/s12859-016-1409-7.

5.

2016 update on APBioNet's annual international conference on bioinformatics (InCoB).

Schönbach C, Verma C, Wee LJ, Bond PJ, Ranganathan S.

BMC Genomics. 2016 Dec 22;17(Suppl 13):1036. doi: 10.1186/s12864-016-3362-2.

6.

GIW and InCoB are advancing bioinformatics in the Asia-Pacific.

Schönbach C, Horton P, Yiu SM, Tan TW, Ranganathan S.

BMC Bioinformatics. 2015 Dec 18;16(Suppl 18):I1. doi: 10.1186/1471-2105-16-S18-I1.

7.

Effects of a Single Escape Mutation on T Cell and HIV-1 Co-adaptation.

Sun X, Shi Y, Akahoshi T, Fujiwara M, Gatanaga H, Schönbach C, Kuse N, Appay V, Gao GF, Oka S, Takiguchi M.

Cell Rep. 2016 Jun 7;15(10):2279-2291. doi: 10.1016/j.celrep.2016.05.017. Epub 2016 May 26.

8.

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history.

Schönbach C, Horton P, Yiu SM, Tan TW, Ranganathan S.

BMC Genomics. 2015;16 Suppl 12:I1. doi: 10.1186/1471-2164-16-S12-I1. Epub 2015 Dec 9.

9.

Introduction to selected papers from GIW/InCoB 2015.

Horton P, Schönbach C, Ranganathan S, Yiu SM.

J Bioinform Comput Biol. 2015 Oct;13(5):1502003. doi: 10.1142/S0219720015020035. No abstract available.

PMID:
26542445
10.

Computational and bioinformatics techniques for immunology.

Pappalardo F, Brusic V, Castiglione F, Schönbach C.

Biomed Res Int. 2014;2014:263189. doi: 10.1155/2014/263189. Epub 2014 Dec 31. No abstract available.

11.

InCoB2014: Systems Biology update from the Asia-Pacific. Introduction.

Ranganathan S, Tan T, Schönbach C.

BMC Syst Biol. 2014;8 Suppl 4:I1. doi: 10.1186/1752-0509-8-S4-I1. Epub 2014 Dec 8.

12.

InCoB2014: mining biological data from genomics for transforming industry and health.

Schönbach C, Tan T, Ranganathan S.

BMC Genomics. 2014;15 Suppl 9:I1. doi: 10.1186/1471-2164-15-S9-I1. Epub 2014 Dec 8.

13.

InCoB2014: bioinformatics to tackle the data to knowledge challenge. Introduction.

Ranganathan S, Tan T, Schönbach C.

BMC Bioinformatics. 2014;15 Suppl 16:I1. doi: 10.1186/1471-2105-15-S16-I1. Epub 2014 Dec 8.

14.

InCoB2013 introduces Systems Biology as a major conference theme.

Schönbach C, Shen B, Tan T, Ranganathan S.

BMC Syst Biol. 2013 Nov 4;7 Suppl 3:S1. doi: 10.1186/1752-0509-7-S3-S1.

15.

APBioNet-transforming bioinformatics in the Asia-Pacific region.

Khan AM, Tan TW, Schönbach C, Ranganathan S.

PLoS Comput Biol. 2013 Oct;9(10):e1003317. doi: 10.1371/journal.pcbi.1003317. Epub 2013 Oct 31. No abstract available.

16.

BlockLogo: visualization of peptide and sequence motif conservation.

Olsen LR, Kudahl UJ, Simon C, Sun J, Schönbach C, Reinherz EL, Zhang GL, Brusic V.

J Immunol Methods. 2013 Dec 31;400-401:37-44. doi: 10.1016/j.jim.2013.08.014. Epub 2013 Aug 31.

17.

Computational vaccinology and the ICoVax 2012 workshop.

He Y, Cao Z, De Groot AS, Brusic V, Schönbach C, Petrovsky N.

BMC Bioinformatics. 2013;14 Suppl 4:I1. doi: 10.1186/1471-2105-14-S4-I1. Epub 2013 Mar 8.

18.

Tysnd1 deficiency in mice interferes with the peroxisomal localization of PTS2 enzymes, causing lipid metabolic abnormalities and male infertility.

Mizuno Y, Ninomiya Y, Nakachi Y, Iseki M, Iwasa H, Akita M, Tsukui T, Shimozawa N, Ito C, Toshimori K, Nishimukai M, Hara H, Maeba R, Okazaki T, Alodaib AN, Al Amoudi M, Jacob M, Alkuraya FS, Horai Y, Watanabe M, Motegi H, Wakana S, Noda T, Kurochkin IV, Mizuno Y, Schönbach C, Okazaki Y.

PLoS Genet. 2013;9(2):e1003286. doi: 10.1371/journal.pgen.1003286. Epub 2013 Feb 14.

19.
20.

Advances in translational bioinformatics and population genomics in the Asia-Pacific.

Ranganathan S, Tongsima S, Chan J, Tan TW, Schönbach C.

BMC Genomics. 2012;13 Suppl 7:S1. doi: 10.1186/1471-2164-13-S7-S1. Epub 2012 Dec 13.

21.

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.

Schönbach C, Tongsima S, Chan J, Brusic V, Tan TW, Ranganathan S.

BMC Bioinformatics. 2012;13 Suppl 17:S1. doi: 10.1186/1471-2105-13-S17-S1. Epub 2012 Dec 13.

22.

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.

Ranganathan S, Schönbach C, Kelso J, Rost B, Nathan S, Tan TW.

BMC Bioinformatics. 2011;12 Suppl 13:S1. doi: 10.1186/1471-2105-12-S13-S1. Epub 2011 Nov 30.

23.

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.

Schönbach C, Tan TW, Kelso J, Rost B, Nathan S, Ranganathan S.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S1. doi: 10.1186/1471-2164-12-S3-S1. Epub 2011 Nov 30.

24.

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010).

Ranganathan S, Schönbach C, Nakai K, Tan TW.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S1. doi: 10.1186/1471-2164-11-S4-S1.

25.

InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010.

Schönbach C, Nakai K, Tan TW, Ranganathan S.

BMC Bioinformatics. 2010 Oct 15;11 Suppl 7:S1. doi: 10.1186/1471-2105-11-S7-S1.

26.

Id4, a new candidate gene for senile osteoporosis, acts as a molecular switch promoting osteoblast differentiation.

Tokuzawa Y, Yagi K, Yamashita Y, Nakachi Y, Nikaido I, Bono H, Ninomiya Y, Kanesaki-Yatsuka Y, Akita M, Motegi H, Wakana S, Noda T, Sablitzky F, Arai S, Kurokawa R, Fukuda T, Katagiri T, Schönbach C, Suda T, Mizuno Y, Okazaki Y.

PLoS Genet. 2010 Jul 8;6(7):e1001019. doi: 10.1371/journal.pgen.1001019.

27.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19.

PMID:
19377474
28.

Predicted mouse peroxisome-targeted proteins and their actual subcellular locations.

Mizuno Y, Kurochkin IV, Herberth M, Okazaki Y, Schönbach C.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S16. doi: 10.1186/1471-2105-9-S12-S16.

29.

Identification of novel PPARgamma target genes by integrated analysis of ChIP-on-chip and microarray expression data during adipocyte differentiation.

Nakachi Y, Yagi K, Nikaido I, Bono H, Tonouchi M, Schönbach C, Okazaki Y.

Biochem Biophys Res Commun. 2008 Jul 25;372(2):362-6. doi: 10.1016/j.bbrc.2008.05.037. Epub 2008 May 19.

PMID:
18489901
30.

The RIKEN mouse transcriptome: lessons learned and implications for the regulation of immune reactions.

Schönbach C.

Novartis Found Symp. 2007;281:25-34; discussion 34-7, 50-3, 208-9. Review.

PMID:
17534063
31.

Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids.

Kurochkin IV, Mizuno Y, Konagaya A, Sakaki Y, Schönbach C, Okazaki Y.

EMBO J. 2007 Feb 7;26(3):835-45. Epub 2007 Jan 25.

32.

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.

Brahmachary M, Schönbach C, Yang L, Huang E, Tan SL, Chowdhary R, Krishnan SP, Lin CY, Hume DA, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bajic VB.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S8.

33.

Mice and men: their promoter properties.

Bajic VB, Tan SL, Christoffels A, Schönbach C, Lipovich L, Yang L, Hofmann O, Kruger A, Hide W, Kai C, Kawai J, Hume DA, Carninci P, Hayashizaki Y.

PLoS Genet. 2006 Apr;2(4):e54. Epub 2006 Apr 28.

34.

The transcriptional landscape of the mammalian genome.

Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).

Science. 2005 Sep 2;309(5740):1559-63. Erratum in: Science. 2006 Mar 24;311(5768):1713.

35.

Sequence-based discovery of the human and rodent peroxisomal proteome.

Kurochkin IV, Nagashima T, Konagaya A, Schönbach C.

Appl Bioinformatics. 2005;4(2):93-104.

PMID:
16128611
36.

An update on the functional molecular immunology (FIMM) database.

Schönbach C, Koh JL, Flower DR, Brusic V.

Appl Bioinformatics. 2005;4(1):25-31.

PMID:
16000010
37.

Textmining in support of knowledge discovery for vaccine development.

Schönbach C, Nagashima T, Konagaya A.

Methods. 2004 Dec;34(4):488-95. Review.

PMID:
15542375
38.

From masking repeats to identifying functional repeats in the mouse transcriptome.

Schönbach C.

Brief Bioinform. 2004 Jun;5(2):107-17.

PMID:
15260892
39.
40.

From immunogenetics to immunomics: functional prospecting of genes and transcripts.

Schönbach C.

Novartis Found Symp. 2003;254:177-88; discussion 189-92, 216-22, 250-2. Review.

PMID:
14712938
41.

FREP: a database of functional repeats in mouse cDNAs.

Nagashima T, Matsuda H, Silva DG, Petrovsky N, Konagaya A, Schönbach C, Kasukawa T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y; RIKEN GER Group; Genome Science Laoratory Members.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D471-5.

42.

Bioinformatic strategies for better understanding of immune function.

Petrovsky N, Schönbach C, Brusic V.

In Silico Biol. 2003;3(4):411-6.

PMID:
12954084
43.

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.

Suzuki H, Saito R, Kanamori M, Kai C, Schönbach C, Nagashima T, Hosaka J, Hayashizaki Y.

Genome Res. 2003 Jun;13(6B):1534-41.

44.

Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS.

Nagashima T, Silva DG, Petrovsky N, Socha LA, Suzuki H, Saito R, Kasukawa T, Kurochkin IV, Konagaya A, Schönbach C.

Genome Res. 2003 Jun;13(6B):1520-33.

45.

Mouse proteome analysis.

Kanapin A, Batalov S, Davis MJ, Gough J, Grimmond S, Kawaji H, Magrane M, Matsuda H, Schönbach C, Teasdale RD, Yuan Z; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1335-44.

46.

Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set.

Brusic V, Pillai RS, Silva DG, Petrovsky N, Schönbach C; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1307-17.

47.

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, Hayashizaki Y, Gaasterland T; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1290-300.

48.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team.

Nature. 2002 Dec 5;420(6915):563-73.

PMID:
12466851
49.

Methods for prediction of peptide binding to MHC molecules: a comparative study.

Yu K, Petrovsky N, Schönbach C, Koh JY, Brusic V.

Mol Med. 2002 Mar;8(3):137-48.

50.

Large-scale computational identification of HIV T-cell epitopes.

Schönbach C, Kun Y, Brusic V.

Immunol Cell Biol. 2002 Jun;80(3):300-6.

PMID:
12067417

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