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Items: 27

1.

Comparison of crowd-sourced, electronic health records based, and traditional health-care based influenza-tracking systems at multiple spatial resolutions in the United States of America.

Baltrusaitis K, Brownstein JS, Scarpino SV, Bakota E, Crawley AW, Conidi G, Gunn J, Gray J, Zink A, Santillana M.

BMC Infect Dis. 2018 Aug 15;18(1):403. doi: 10.1186/s12879-018-3322-3.

2.

Modelling the trajectory of disease outbreaks works.

Rivers CM, Scarpino SV.

Nature. 2018 Jul;559(7715):477. doi: 10.1038/d41586-018-05798-3. No abstract available.

PMID:
30042542
3.

Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology.

Meyers L, Ginocchio CC, Faucett AN, Nolte FS, Gesteland PH, Leber A, Janowiak D, Donovan V, Dien Bard J, Spitzer S, Stellrecht KA, Salimnia H, Selvarangan R, Juretschko S, Daly JA, Wallentine JC, Lindsey K, Moore F, Reed SL, Aguero-Rosenfeld M, Fey PD, Storch GA, Melnick SJ, Robinson CC, Meredith JF, Cook CV, Nelson RK, Jones JD, Scarpino SV, Althouse BM, Ririe KM, Malin BA, Poritz MA.

JMIR Public Health Surveill. 2018 Jul 6;4(3):e59. doi: 10.2196/publichealth.9876.

4.

The risk of sustained sexual transmission of Zika is underestimated.

Allard A, Althouse BM, Hébert-Dufresne L, Scarpino SV.

PLoS Pathog. 2017 Sep 21;13(9):e1006633. doi: 10.1371/journal.ppat.1006633. eCollection 2017 Sep.

5.

Asymmetric percolation drives a double transition in sexual contact networks.

Allard A, Althouse BM, Scarpino SV, Hébert-Dufresne L.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):8969-8973. doi: 10.1073/pnas.1703073114. Epub 2017 Aug 8.

6.

Topological features of a gene co-expression network predict patterns of natural diversity in environmental response.

Des Marais DL, Guerrero RF, Lasky JR, Scarpino SV.

Proc Biol Sci. 2017 Jun 14;284(1856). pii: 20170914. doi: 10.1098/rspb.2017.0914.

7.

Design Strategies for Efficient Arbovirus Surveillance.

Scarpino SV, Meyers LA, Johansson MA.

Emerg Infect Dis. 2017 Apr;23(4):642-644. doi: 10.3201/eid2304.160944.

8.

Modeling the Effects of Priming With the Whole-Cell Bordetella Pertussis Vaccine-Reply.

DeAngelis H, Scarpino SV, Althouse BM.

JAMA Pediatr. 2016 Dec 1;170(12):1229. doi: 10.1001/jamapediatrics.2016.2819. No abstract available.

PMID:
27802485
9.

On the young age of intraspecific herbaceous taxa.

Levin DA, Scarpino SV.

New Phytol. 2017 Feb;213(3):1513-1520. doi: 10.1111/nph.14224. Epub 2016 Oct 11.

10.

Cost-effectiveness of next-generation vaccines: The case of pertussis.

Fitzpatrick MC, Wenzel NS, Scarpino SV, Althouse BM, Atkins KE, Galvani AP, Townsend JP.

Vaccine. 2016 Jun 17;34(29):3405-11. doi: 10.1016/j.vaccine.2016.04.010. Epub 2016 Apr 14.

PMID:
27087151
11.

Epidemiological and Economic Effects of Priming With the Whole-Cell Bordetella pertussis Vaccine.

DeAngelis H, Scarpino SV, Fitzpatrick MC, Galvani AP, Althouse BM.

JAMA Pediatr. 2016 May 1;170(5):459-65. doi: 10.1001/jamapediatrics.2016.0047.

PMID:
27018830
12.

Estimating Trait Heritability in Highly Fecund Species.

Davies SW, Scarpino SV, Pongwarin T, Scott J, Matz MV.

G3 (Bethesda). 2015 Oct 4;5(12):2639-45. doi: 10.1534/g3.115.020701.

13.

Message-passing approach for recurrent-state epidemic models on networks.

Shrestha M, Scarpino SV, Moore C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022821. Epub 2015 Aug 27.

PMID:
26382468
14.

Asymptomatic transmission and the resurgence of Bordetella pertussis.

Althouse BM, Scarpino SV.

BMC Med. 2015 Jun 24;13:146. doi: 10.1186/s12916-015-0382-8.

15.

Enhancing disease surveillance with novel data streams: challenges and opportunities.

Althouse BM, Scarpino SV, Meyers LA, Ayers JW, Bargsten M, Baumbach J, Brownstein JS, Castro L, Clapham H, Cummings DA, Del Valle S, Eubank S, Fairchild G, Finelli L, Generous N, George D, Harper DR, Hébert-Dufresne L, Johansson MA, Konty K, Lipsitch M, Milinovich G, Miller JD, Nsoesie EO, Olson DR, Paul M, Polgreen PM, Priedhorsky R, Read JM, Rodríguez-Barraquer I, Smith DJ, Stefansen C, Swerdlow DL, Thompson D, Vespignani A, Wesolowski A.

EPJ Data Sci. 2015;4. pii: 17. doi: 10.1140/epjds/s13688-015-0054-0. Epub 2015 Oct 16.

16.

Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission.

Scarpino SV, Iamarino A, Wells C, Yamin D, Ndeffo-Mbah M, Wenzel NS, Fox SJ, Nyenswah T, Altice FL, Galvani AP, Meyers LA, Townsend JP.

Clin Infect Dis. 2015 Apr 1;60(7):1079-82. doi: 10.1093/cid/ciu1131. Epub 2014 Dec 15.

17.

Opinion: Mathematical models: a key tool for outbreak response.

Lofgren ET, Halloran ME, Rivers CM, Drake JM, Porco TC, Lewis B, Yang W, Vespignani A, Shaman J, Eisenberg JN, Eisenberg MC, Marathe M, Scarpino SV, Alexander KA, Meza R, Ferrari MJ, Hyman JM, Meyers LA, Eubank S.

Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):18095-6. doi: 10.1073/pnas.1421551111. Epub 2014 Dec 10. No abstract available.

18.

Ebola: mobility data.

Halloran ME, Vespignani A, Bharti N, Feldstein LR, Alexander KA, Ferrari M, Shaman J, Drake JM, Porco T, Eisenberg JN, Del Valle SY, Lofgren E, Scarpino SV, Eisenberg MC, Gao D, Hyman JM, Eubank S, Longini IM Jr.

Science. 2014 Oct 24;346(6208):433. doi: 10.1126/science.346.6208.433-a. No abstract available.

19.

Polyploid formation shapes flowering plant diversity.

Scarpino SV, Levin DA, Meyers LA.

Am Nat. 2014 Oct;184(4):456-65. doi: 10.1086/677752. Epub 2014 Aug 18.

PMID:
25226181
20.

Evolution of a genetic incompatibility in the genus Xiphophorus.

Scarpino SV, Hunt PJ, Garcia-De-Leon FJ, Juenger TE, Schartl M, Kirkpatrick M.

Mol Biol Evol. 2013 Oct;30(10):2302-10. doi: 10.1093/molbev/mst127. Epub 2013 Jul 27.

PMID:
23894140
21.

Epigenetic transgenerational inheritance of altered stress responses.

Crews D, Gillette R, Scarpino SV, Manikkam M, Savenkova MI, Skinner MK.

Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9143-8. doi: 10.1073/pnas.1118514109. Epub 2012 May 21.

22.

Optimizing provider recruitment for influenza surveillance networks.

Scarpino SV, Dimitrov NB, Meyers LA.

PLoS Comput Biol. 2012;8(4):e1002472. doi: 10.1371/journal.pcbi.1002472. Epub 2012 Apr 12.

23.

About PAR: the distinct evolutionary dynamics of the pseudoautosomal region.

Otto SP, Pannell JR, Peichel CL, Ashman TL, Charlesworth D, Chippindale AK, Delph LF, Guerrero RF, Scarpino SV, McAllister BF.

Trends Genet. 2011 Sep;27(9):358-67. doi: 10.1016/j.tig.2011.05.001. Review.

PMID:
21962971
24.

Environment-dependent intralocus sexual conflict in a dioecious plant.

Delph LF, Andicoechea J, Steven JC, Herlihy CR, Scarpino SV, Bell DL.

New Phytol. 2011 Oct;192(2):542-52. doi: 10.1111/j.1469-8137.2011.03811.x. Epub 2011 Jul 4.

25.

Modeling the spatial distribution and fruiting pattern of a key tree species in a neotropical forest: methodology and potential applications.

Caillaud D, Crofoot MC, Scarpino SV, Jansen PA, Garzon-Lopez CX, Winkelhagen AJ, Bohlman SA, Walsh PD.

PLoS One. 2010 Nov 22;5(11):e15002. doi: 10.1371/journal.pone.0015002.

26.

Patterns of neutral genetic variation on recombining sex chromosomes.

Kirkpatrick M, Guerrero RF, Scarpino SV.

Genetics. 2010 Apr;184(4):1141-52. doi: 10.1534/genetics.109.113555. Epub 2010 Feb 1.

27.

Initial human transmission dynamics of the pandemic (H1N1) 2009 virus in North America.

Pourbohloul B, Ahued A, Davoudi B, Meza R, Meyers LA, Skowronski DM, Villaseñor I, Galván F, Cravioto P, Earn DJ, Dushoff J, Fisman D, Edmunds WJ, Hupert N, Scarpino SV, Trujillo J, Lutzow M, Morales J, Contreras A, Chávez C, Patrick DM, Brunham RC.

Influenza Other Respir Viruses. 2009 Sep;3(5):215-22. doi: 10.1111/j.1750-2659.2009.00100.x.

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