Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 146

1.

A Temporal Map of Gene Expression Pattern During Zebrafish Liver Regeneration.

Jagtap U, Sivadas A, Basu S, Verma A, Sivasubbu S, Scaria V, Sachidanandan C.

Zebrafish. 2019 Nov 26. doi: 10.1089/zeb.2019.1790. [Epub ahead of print]

PMID:
31770088
2.

Genomics of rare genetic diseases-experiences from India.

GUaRDIAN Consortium, Sivasubbu S, Scaria V.

Hum Genomics. 2019 Sep 25;14(1):52. doi: 10.1186/s40246-019-0215-5. Review.

3.

Saliva microbiome in primary Sjögren's syndrome reveals distinct set of disease-associated microbes.

Sharma D, Sandhya P, Vellarikkal SK, Surin AK, Jayarajan R, Verma A, Kumar A, Ravi R, Danda D, Sivasubbu S, Scaria V.

Oral Dis. 2019 Sep 12. doi: 10.1111/odi.13191. [Epub ahead of print]

PMID:
31514257
4.

Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing.

Ghose S, Ghosh S, Tanwar VS, Tolani P, Kutum R, Sharma A, Bhardwaj N, Shamsudheen KV, Verma A, Jayarajan R, Dash D, Sivasubbu S, Scaria V, Seth S, Sengupta S.

Gene. 2019 Dec 30;721:144107. doi: 10.1016/j.gene.2019.144107. Epub 2019 Sep 6.

PMID:
31499127
5.

Loss of function mutation in the P2X7, a ligand-gated ion channel gene associated with hypertrophic cardiomyopathy.

Biswas A, Raza A, Das S, Kapoor M, Jayarajan R, Verma A, Shamsudheen KV, Murry B, Seth S, Bhargava B, Scaria V, Sivasubbu S, Rao VR.

Purinergic Signal. 2019 Jun;15(2):205-210. doi: 10.1007/s11302-019-09660-7. Epub 2019 May 31.

6.

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis.

Thottath J, Vellarikkal SK, Jayarajan R, Verma A, Manamel M, Singh A, Rajendran VR, Sivasubbu S, Scaria V.

Neurol Genet. 2019 Apr 11;5(3):e302. doi: 10.1212/NXG.0000000000000302. eCollection 2019 Jun. No abstract available.

7.

Population-scale genomics-Enabling precision public health.

Sivadas A, Scaria V.

Adv Genet. 2019;103:119-161. doi: 10.1016/bs.adgen.2018.09.001. Epub 2018 Dec 7. Review.

PMID:
30904093
8.

Normative range of blood biochemical parameters in urban Indian school-going adolescents.

Bandesh K, Jha P, Giri AK, Marwaha RK; INDICO, Scaria V, Tandon N, Bharadwaj D.

PLoS One. 2019 Mar 7;14(3):e0213255. doi: 10.1371/journal.pone.0213255. eCollection 2019.

9.

A genome-wide map of circular RNAs in adult zebrafish.

Sharma D, Sehgal P, Mathew S, Vellarikkal SK, Singh AR, Kapoor S, Jayarajan R, Scaria V, Sivasubbu S.

Sci Rep. 2019 Mar 5;9(1):3432. doi: 10.1038/s41598-019-39977-7.

10.

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.

Mathew S, Sivadas A, Sehgal P, Kaushik K, Vellarikkal SK, Scaria V, Sivasubbu S.

Methods Mol Biol. 2019;1912:77-110. doi: 10.1007/978-1-4939-8982-9_4.

PMID:
30635891
11.

Methods for Annotation and Validation of Circular RNAs from RNAseq Data.

Sharma D, Sehgal P, Hariprakash J, Sivasubbu S, Scaria V.

Methods Mol Biol. 2019;1912:55-76. doi: 10.1007/978-1-4939-8982-9_3.

PMID:
30635890
12.

Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, Fromm B, Peterson KJ, Scaria V, Sivasubbu S, Pillai B.

PLoS One. 2018 Sep 27;13(9):e0204234. doi: 10.1371/journal.pone.0204234. eCollection 2018.

13.

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes.

Hariprakash JM, Vellarikkal SK, Verma A, Ranawat AS, Jayarajan R, Ravi R, Kumar A, Dixit V, Sivadas A, Kashyap AK, Senthivel V, Sehgal P, Mahadevan V, Scaria V, Sivasubbu S.

Database (Oxford). 2018 Jan 1;2018:1-10. doi: 10.1093/database/bay080.

14.

Genotype-Phenotype Correlations of Dystrophic Epidermolysis Bullosa in India: Experience from a Tertiary Care Centre.

Yenamandra VK, Vellarikkal SK, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Sharma VK, Sethuraman G.

Acta Derm Venereol. 2018 Oct 10;98(9):873-879. doi: 10.2340/00015555-2929.

15.

From genomes to genomic medicine: enabling personalized and precision medicine in the Middle East.

Jithesh PV, Scaria V.

Per Med. 2017 Sep;14(5):377-382. doi: 10.2217/pme-2017-0048. Epub 2017 Sep 1. No abstract available.

PMID:
29754564
16.

A new strain of white spot syndrome virus affecting Litopenaeus vannamei in Indian shrimp farms.

Sivakumar S, Vimal S, Abdul Majeed S, Santhosh Kumar S, Taju G, Madan N, Rajkumar T, Thamizhvanan S, Shamsudheen KV, Scaria V, Sivasubbu S, Sahul Hameed AS.

J Fish Dis. 2018 Jul;41(7):1129-1146. doi: 10.1111/jfd.12811. Epub 2018 May 10.

PMID:
29745450
17.

Pharmacogenomic survey of Qatari populations using whole-genome and exome sequences.

Sivadas A, Scaria V.

Pharmacogenomics J. 2018 Jul;18(4):590-600. doi: 10.1038/s41397-018-0022-8. Epub 2018 May 3.

PMID:
29720721
18.

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs.

Jalali S, Gandhi S, Scaria V.

Front Mol Biosci. 2018 Apr 4;5:27. doi: 10.3389/fmolb.2018.00027. eCollection 2018.

19.

A founder mutation MLC1 c.736delA associated with megalencephalic leukoencephalopathy with subcortical cysts-1 in north Indian kindred.

Vellarikkal SK, Jayarajan R, Verma A, Ravi R, Senthilvel V, Kumar A, Saini L, Gulati S, Lal M, Mathur A, Chhetri MK, Faruq M, Scaria V, Sivasubbu S.

Clin Genet. 2018 Aug;94(2):271-273. doi: 10.1111/cge.13251. Epub 2018 Apr 18. No abstract available.

PMID:
29667716
20.

Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease.

Virmani N, Vellarikkal SK, Verma A, Jayarajan R, Sakhiya J, Desai C, Sivasubbu S, Scaria V.

Indian J Dermatol Venereol Leprol. 2018 May-Jun;84(3):344-346. doi: 10.4103/ijdvl.IJDVL_268_17. No abstract available.

21.

Familial Hypertrophic Cardiomyopathy - Identification of cause and risk stratification through exome sequencing.

Biswas A, Das S, Kapoor M, Shamsudheen KV, Jayarajan R, Verma A, Seth S, Bhargava B, Scaria V, Sivasubbu S, Rao VR.

Gene. 2018 Jun 20;660:151-156. doi: 10.1016/j.gene.2018.03.062. Epub 2018 Mar 21.

PMID:
29572196
22.

Incidental and clinically actionable genetic variants in 1005 whole exomes and genomes from Qatar.

Jain A, Gandhi S, Koshy R, Scaria V.

Mol Genet Genomics. 2018 Aug;293(4):919-929. doi: 10.1007/s00438-018-1431-8. Epub 2018 Mar 20.

PMID:
29557500
23.

Utility of whole-exome sequencing in detecting novel compound heterozygous mutations in COL7A1 among families with severe recessive dystrophic epidermolysis bullosa in India - implications on diagnosis, prognosis and prenatal testing.

Mahajan R, Vellarikkal SK, Handa S, Verma A, Jayarajan R, Kumar A, De D, Kaur J, Panigrahi I, Vineeth VS, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2018 Dec;32(12):e433-e435. doi: 10.1111/jdv.14909. Epub 2018 Aug 14. No abstract available.

PMID:
29512197
24.

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Sabharwal A, Sharma D, Vellarikkal SK, Jayarajan R, Verma A, Senthivel V, Scaria V, Sivasubbu S.

Mitochondrion. 2019 May;46:59-68. doi: 10.1016/j.mito.2018.02.007. Epub 2018 Feb 24.

PMID:
29486245
25.

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

Kaushik K, Sivadas A, Vellarikkal SK, Verma A, Jayarajan R, Pandey S, Sethi T, Maiti S, Scaria V, Sivasubbu S.

BMC Genomics. 2018 Feb 15;19(1):147. doi: 10.1186/s12864-018-4497-0.

26.

Chemical and genetic rescue of an ep300 knockdown model for Rubinstein Taybi Syndrome in zebrafish.

Babu A, Kamaraj M, Basu M, Mukherjee D, Kapoor S, Ranjan S, Swamy MM, Kaypee S, Scaria V, Kundu TK, Sachidanandan C.

Biochim Biophys Acta Mol Basis Dis. 2018 Apr;1864(4 Pt A):1203-1215. doi: 10.1016/j.bbadis.2018.01.029. Epub 2018 Jan 31.

27.

Rapid Transition of Facial Features from Early to Mid - Adolescence in Autosomal Dominant Hyper IgE Syndrome with a STAT3 Variation.

Geeta Mg, Riyaz A, Krishnan C, Scaria V.

Indian J Pediatr. 2018 Jul;85(7):595-596. doi: 10.1007/s12098-017-2603-y. Epub 2018 Jan 24. No abstract available.

PMID:
29368105
28.

Pharmacogenetic landscape of DPYD variants in south Asian populations by integration of genome-scale data.

Hariprakash JM, Vellarikkal SK, Keechilat P, Verma A, Jayarajan R, Dixit V, Ravi R, Senthivel V, Kumar A, Sehgal P, Sonakar AK, Ambawat S, Giri AK, Philip A, Sivadas A, Faruq M, Bharadwaj D, Sivasubbu S, Scaria V.

Pharmacogenomics. 2018 Feb;19(3):227-241. doi: 10.2217/pgs-2017-0101. Epub 2017 Dec 14.

PMID:
29239269
29.

MitoepigenomeKB a comprehensive resource for human mitochondrial epigenetic data.

Ghosh S, Ranawat AS, Tolani P, Scaria V.

Mitochondrion. 2018 Sep;42:54-58. doi: 10.1016/j.mito.2017.11.001. Epub 2017 Nov 9.

PMID:
29129553
30.

Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in RAG1 associated with B- T- NK+ severe combined immunodeficiency.

Govindaraj GM, Karuthedath Vellarikkal S, Jayarajan R, Ravi R, Verma A, Chakkiyar K, Jayakrishnan MP, Arakkal R, Raj R, Kunnaruvath R, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 Oct 18 [revised 2017 Jan 1];5:2532. doi: 10.12688/f1000research.9473.2. eCollection 2016.

31.

Diagnosis of Inherited Epidermolysis Bullosa in Resource-Limited Settings: Immunohistochemistry Revisited.

Yenamandra VK, Bhari N, Ray SB, Sreenivas V, Dinda AK, Scaria V, Sharma VK, Sethuraman G.

Dermatology. 2017;233(4):326-332. doi: 10.1159/000478856. Epub 2017 Oct 26.

PMID:
29069641
32.

Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of BTK gene in a young Indian individual with X-linked agammaglobulinemia.

Rawat A, Karuthedath Vellarikkal S, Verma A, Jayarajan R, Gupta A, Singh S, Chopra A, Kumar R, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Nov 14 [revised 2017 Jan 1];5:2667. doi: 10.12688/f1000research.9472.2. eCollection 2016.

33.

Autosomal recessive epidermolysis bullosa simplex: report of three cases from India.

Yenamandra VK, Shamsudheen KV, Madhumita RC, Rijith J, Ankit V, Scaria V, Sridhar S, Kabra M, Sharma VK, Sethuraman G.

Clin Exp Dermatol. 2017 Oct;42(7):800-803. doi: 10.1111/ced.13182. No abstract available.

PMID:
28925504
34.

Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.

Jalali S, Singh A, Maiti S, Scaria V.

J Transl Med. 2017 Sep 2;15(1):186. doi: 10.1186/s12967-017-1282-9.

35.

RNA sequencing of db/db mice liver identifies lncRNA H19 as a key regulator of gluconeogenesis and hepatic glucose output.

Goyal N, Sivadas A, Shamsudheen KV, Jayarajan R, Verma A, Sivasubbu S, Scaria V, Datta M.

Sci Rep. 2017 Aug 16;7(1):8312. doi: 10.1038/s41598-017-08281-7.

36.

al mena: a comprehensive resource of human genetic variants integrating genomes and exomes from Arab, Middle Eastern and North African populations.

Koshy R, Ranawat A, Scaria V.

J Hum Genet. 2017 Oct;62(10):889-894. doi: 10.1038/jhg.2017.67. Epub 2017 Jun 22.

PMID:
28638141
37.

Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Pseudomonas aeruginosa Infection.

Balloy V, Koshy R, Perra L, Corvol H, Chignard M, Guillot L, Scaria V.

Front Cell Infect Microbiol. 2017 May 29;7:218. doi: 10.3389/fcimb.2017.00218. eCollection 2017.

38.

Genetic epidemiology of familial Mediterranean fever through integrative analysis of whole genome and exome sequences from Middle East and North Africa.

Koshy R, Sivadas A, Scaria V.

Clin Genet. 2018 Jan;93(1):92-102. doi: 10.1111/cge.13070. Epub 2017 Sep 26.

PMID:
28597968
39.

Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever.

Sandhya P, Vellarikkal SK, Nair A, Ravi R, Mathew J, Jayarajan R, Kumar A, Verma A, Sivadas A, Danda D, Sivasubbu S, Scaria V.

Int J Rheum Dis. 2017 Nov;20(11):1770-1775. doi: 10.1111/1756-185X.13042. Epub 2017 Feb 17.

PMID:
28211254
40.

Autologous NeoHep Derived from Chronic Hepatitis B Virus Patients' Blood Monocytes by Upregulation of c-MET Signaling.

Bhattacharjee J, Das B, Sharma D, Sahay P, Jain K, Mishra A, Iyer S, Nagpal P, Scaria V, Nagarajan P, Khanduri P, Mukhopadhyay A, Upadhyay P.

Stem Cells Transl Med. 2017 Jan;6(1):174-186. doi: 10.5966/sctm.2015-0308. Epub 2016 Jul 28.

41.

Application of whole exome sequencing in elucidating the phenotype and genotype spectrum of junctional epidermolysis bullosa: A preliminary experience of a tertiary care centre in India.

Yenamandra VK, Vellarikkal SK, Kumar M, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Kaur P, Sharma VK, Sethuraman G.

J Dermatol Sci. 2017 Apr;86(1):30-36. doi: 10.1016/j.jdermsci.2016.12.020. Epub 2016 Dec 29.

PMID:
28087116
42.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

44.
45.

Landscape of warfarin and clopidogrel pharmacogenetic variants in Qatari population from whole exome datasets.

Sivadas A, Sharma P, Scaria V.

Pharmacogenomics. 2016 Nov;17(17):1891-1901. doi: 10.2217/pgs-2016-0130. Epub 2016 Oct 21.

PMID:
27767380
46.

Computational Analysis and Predictive Cheminformatics Modeling of Small Molecule Inhibitors of Epigenetic Modifiers.

Jamal S, Arora S, Scaria V.

PLoS One. 2016 Sep 13;11(9):e0083032. doi: 10.1371/journal.pone.0083032. eCollection 2016.

47.

Rescue of neural crest-derived phenotypes in a zebrafish CHARGE model by Sox10 downregulation.

Asad Z, Pandey A, Babu A, Sun Y, Shevade K, Kapoor S, Ullah I, Ranjan S, Scaria V, Bajpai R, Sachidanandan C.

Hum Mol Genet. 2016 Aug 15;25(16):3539-3554. doi: 10.1093/hmg/ddw198. Epub 2016 Jul 13.

48.

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa.

Karuthedath Vellarikkal S, Jayarajan R, Verma A, Nair S, Ravi R, Senthivel V, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 May 17 [revised 2016 Jan 1];5:900. doi: 10.12688/f1000research.8380.2. eCollection 2016.

49.

Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess.

Narayanan R, Karuthedath Vellarikkal S, Jayarajan R, Verma A, Dixit V, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Jul 6 [revised 2017 Jan 1];5:1592. doi: 10.12688/f1000research.8779.2. eCollection 2016.

50.

Anti-HIV microRNA expression in a novel Indian cohort.

Dey R, Soni K, Saravanan S, Balakrishnan P, Kumar V, Boobalan J, Solomon SS, Scaria V, Solomon S, Brahmachari SK, Pillai B.

Sci Rep. 2016 Jun 20;6:28279. doi: 10.1038/srep28279.

Supplemental Content

Loading ...
Support Center