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Items: 24

1.

Long-fragment targeted capture for long-read sequencing of plastomes.

Bethune K, Mariac C, Couderc M, Scarcelli N, Santoni S, Ardisson M, Martin JF, Montúfar R, Klein V, Sabot F, Vigouroux Y, Couvreur TLP.

Appl Plant Sci. 2019 May 8;7(5):e1243. doi: 10.1002/aps3.1243. eCollection 2019 May.

2.

Yam genomics supports West Africa as a major cradle of crop domestication.

Scarcelli N, Cubry P, Akakpo R, Thuillet AC, Obidiegwu J, Baco MN, Otoo E, Sonké B, Dansi A, Djedatin G, Mariac C, Couderc M, Causse S, Alix K, Chaïr H, François O, Vigouroux Y.

Sci Adv. 2019 May 1;5(5):eaaw1947. doi: 10.1126/sciadv.aaw1947. eCollection 2019 May.

3.

Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation.

Burgarella C, Barnaud A, Kane NA, Jankowski F, Scarcelli N, Billot C, Vigouroux Y, Berthouly-Salazar C.

Front Plant Sci. 2019 Feb 1;10:4. doi: 10.3389/fpls.2019.00004. eCollection 2019. Review.

4.

A western Sahara centre of domestication inferred from pearl millet genomes.

Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X, Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, François O, Berthouly-Salazar C, Vigouroux Y.

Nat Ecol Evol. 2018 Sep;2(9):1377-1380. doi: 10.1038/s41559-018-0643-y. Epub 2018 Aug 6.

PMID:
30082736
5.

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y.

Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5.

6.

Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes.

Akakpo R, Scarcelli N, Chaïr H, Dansi A, Djedatin G, Thuillet AC, Rhoné B, François O, Alix K, Vigouroux Y.

BMC Genomics. 2017 Oct 12;18(1):782. doi: 10.1186/s12864-017-4143-2.

7.

Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient.

Glato K, Aidam A, Kane NA, Bassirou D, Couderc M, Zekraoui L, Scarcelli N, Barnaud A, Vigouroux Y.

PLoS One. 2017 May 26;12(5):e0177697. doi: 10.1371/journal.pone.0177697. eCollection 2017.

8.

Evolutionary forces affecting synonymous variations in plant genomes.

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S.

PLoS Genet. 2017 May 22;13(5):e1006799. doi: 10.1371/journal.pgen.1006799. eCollection 2017 May.

9.

Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication.

Moreira PA, Mariac C, Scarcelli N, Couderc M, Rodrigues DP, Clement CR, Vigouroux Y.

Appl Plant Sci. 2016 Oct 18;4(10). pii: apps.1600048. eCollection 2016 Oct.

10.

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M.

Mol Ecol Resour. 2017 May;17(3):565-580. doi: 10.1111/1755-0998.12587. Epub 2016 Aug 29.

PMID:
27487989
11.

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

Scarcelli N, Mariac C, Couvreur TL, Faye A, Richard D, Sabot F, Berthouly-Salazar C, Vigouroux Y.

Mol Ecol Resour. 2016 Mar;16(2):434-45. doi: 10.1111/1755-0998.12462. Epub 2015 Sep 20.

PMID:
26388536
12.

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies.

Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Kougbeadjo A, Maillol V, Martin G, Sabot F, Santoni S, Vigouroux Y, Couvreur TL.

Mol Ecol Resour. 2014 Nov;14(6):1103-13. doi: 10.1111/1755-0998.12258. Epub 2014 Apr 23.

PMID:
24690362
13.

Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata).

Scarcelli N, Couderc M, Baco MN, Egah J, Vigouroux Y.

BMC Plant Biol. 2013 Nov 13;13:178. doi: 10.1186/1471-2229-13-178.

14.

Genetic structure of farmer-managed varieties in clonally-propagated crops.

Scarcelli N, Tostain S, Vigouroux Y, Luong V, Baco MN, Agbangla C, Daïnou O, Pham JL.

Genetica. 2011 Aug;139(8):1055-64. doi: 10.1007/s10709-011-9607-8. Epub 2011 Sep 7.

PMID:
21898046
15.

Correlated response in plasticity to selection for early flowering in Arabidopsis thaliana.

Springate DA, Scarcelli N, Rowntree J, Kover PX.

J Evol Biol. 2011 Oct;24(10):2280-8. doi: 10.1111/j.1420-9101.2011.02360.x. Epub 2011 Aug 4.

16.

Biodiversity, evolution and adaptation of cultivated crops.

Vigouroux Y, Barnaud A, Scarcelli N, Thuillet AC.

C R Biol. 2011 May;334(5-6):450-7. doi: 10.1016/j.crvi.2011.03.003. Epub 2011 Apr 30. Review.

PMID:
21640954
17.

A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons.

Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, d'Anfray A, Vigouroux Y, Pintaud JC.

PLoS One. 2011;6(5):e19954. doi: 10.1371/journal.pone.0019954. Epub 2011 May 26.

18.

Pleiotropic effects of environment-specific adaptation in Arabidopsis thaliana.

Kover PX, Rowntree JK, Scarcelli N, Savriama Y, Eldridge T, Schaal BA.

New Phytol. 2009 Aug;183(3):816-25. doi: 10.1111/j.1469-8137.2009.02943.x. Epub 2009 Jul 8.

19.

A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana.

Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R.

PLoS Genet. 2009 Jul;5(7):e1000551. doi: 10.1371/journal.pgen.1000551. Epub 2009 Jul 10.

20.

Standing genetic variation in FRIGIDA mediates experimental evolution of flowering time in Arabidopsis.

Scarcelli N, Kover PX.

Mol Ecol. 2009 May;18(9):2039-49. doi: 10.1111/j.1365-294X.2009.04145.x. Epub 2009 Mar 20.

PMID:
19317844
21.

Dilemmas caused by endogenous pararetroviruses regarding the taxonomy and diagnosis of yam (Dioscorea spp.) badnaviruses: analyses to support safe germplasm movement.

Bousalem M, Durand O, Scarcelli N, Lebas BS, Kenyon L, Marchand JL, Lefort F, Seal SE.

Arch Virol. 2009;154(2):297-314. doi: 10.1007/s00705-009-0311-2. Epub 2009 Feb 4.

PMID:
19190853
22.

Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus.

Scarcelli N, Cheverud JM, Schaal BA, Kover PX.

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16986-91. Epub 2007 Oct 16.

23.

Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin.

Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Daïnou O, Pham JL.

Mol Ecol. 2006 Aug;15(9):2421-31.

PMID:
16842416
24.

Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40).

Scarcelli N, Daïnou O, Agbangla C, Tostain S, Pham JL.

Theor Appl Genet. 2005 Jul;111(2):226-32. Epub 2005 Jun 2.

PMID:
15931507

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