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A prospective study of consecutive emergency medical admissions to compare a novel automated computer-aided mortality risk score and clinical judgement of patient mortality risk.

Faisal M, Khatoon B, Scally A, Richardson D, Irwin S, Davidson R, Heseltine D, Corlett A, Ali J, Hampson R, Kesavan S, McGonigal G, Goodman K, Harkness M, Mohammed M.

BMJ Open. 2019 Jun 19;9(6):e027741. doi: 10.1136/bmjopen-2018-027741.


Does achieving the 'Best Practice Tariff' criteria for fractured neck of femur patients improve one year outcomes?

Whitaker SR, Nisar S, Scally AJ, Radcliffe GS.

Injury. 2019 Jul;50(7):1358-1363. doi: 10.1016/j.injury.2019.06.007. Epub 2019 Jun 3.


Computer-aided National Early Warning Score to predict the risk of sepsis following emergency medical admission to hospital: a model development and external validation study.

Faisal M, Richardson D, Scally AJ, Howes R, Beatson K, Speed K, Mohammed MA.

CMAJ. 2019 Apr 8;191(14):E382-E389. doi: 10.1503/cmaj.181418.


Medication-related risk factors and its association with repeated hospital admissions in frail elderly: A case control study.

Cheong VL, Sowter J, Scally A, Hamilton N, Ali A, Silcock J.

Res Social Adm Pharm. 2019 Feb 13. pii: S1551-7411(18)30667-3. doi: 10.1016/j.sapharm.2019.02.001. [Epub ahead of print]


Development and validation of a novel computer-aided score to predict the risk of in-hospital mortality for acutely ill medical admissions in two acute hospitals using their first electronically recorded blood test results and vital signs: a cross-sectional study.

Faisal M, Scally AJ, Jackson N, Richardson D, Beatson K, Howes R, Speed K, Menon M, Daws J, Dyson J, Marsh C, Mohammed MA.

BMJ Open. 2018 Dec 6;8(12):e022939. doi: 10.1136/bmjopen-2018-022939.


A comparison of logistic regression models with alternative machine learning methods to predict the risk of in-hospital mortality in emergency medical admissions via external validation.

Faisal M, Scally A, Howes R, Beatson K, Richardson D, Mohammed MA.

Health Informatics J. 2018 Nov 29:1460458218813600. doi: 10.1177/1460458218813600. [Epub ahead of print]


Genomes reveal marked differences in the adaptive evolution between orangutan species.

Mattle-Greminger MP, Bilgin Sonay T, Nater A, Pybus M, Desai T, de Valles G, Casals F, Scally A, Bertranpetit J, Marques-Bonet T, van Schaik CP, Anisimova M, Krützen M.

Genome Biol. 2018 Nov 15;19(1):193. doi: 10.1186/s13059-018-1562-6.


Factors Affecting Sound-Source Localization in Children With Simultaneous or Sequential Bilateral Cochlear Implants.

Killan C, Scally A, Killan E, Totten C, Raine C.

Ear Hear. 2019 Jul/Aug;40(4):870-877. doi: 10.1097/AUD.0000000000000666.


Reducing emergency hospital admissions: a population health complex intervention of an enhanced model of primary care and compassionate communities.

Abel J, Kingston H, Scally A, Hartnoll J, Hannam G, Thomson-Moore A, Kellehear A.

Br J Gen Pract. 2018 Nov;68(676):e803-e810. doi: 10.3399/bjgp18X699437. Epub 2018 Oct 8.


Membrane sweeping at term to promote spontaneous labour and reduce the likelihood of a formal induction of labour for postmaturity: a systematic review and meta-analysis.

Avdiyovski H, Haith-Cooper M, Scally A.

J Obstet Gynaecol. 2019 Jan;39(1):54-62. doi: 10.1080/01443615.2018.1467388. Epub 2018 Oct 4.


Detecting archaic introgression using an unadmixed outgroup.

Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R.

PLoS Genet. 2018 Sep 18;14(9):e1007641. doi: 10.1371/journal.pgen.1007641. eCollection 2018 Sep.


Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Scerri EML, Thomas MG, Manica A, Gunz P, Stock JT, Stringer C, Grove M, Groucutt HS, Timmermann A, Rightmire GP, d'Errico F, Tryon CA, Drake NA, Brooks AS, Dennell RW, Durbin R, Henn BM, Lee-Thorp J, deMenocal P, Petraglia MD, Thompson JC, Scally A, Chikhi L.

Trends Ecol Evol. 2018 Aug;33(8):582-594. doi: 10.1016/j.tree.2018.05.005. Epub 2018 Jul 11.


High-quality genomes reveal new differences between the great apes.

Scally A.

Nature. 2018 Jul;559(7714):336-338. doi: 10.1038/d41586-018-05679-9. No abstract available.


Gait termination on a declined surface in trans-femoral amputees: Impact of using microprocessor-controlled limb system.

Abdulhasan ZM, Scally AJ, Buckley JG.

Clin Biomech (Bristol, Avon). 2018 Aug;57:35-41. doi: 10.1016/j.clinbiomech.2018.05.015. Epub 2018 May 30.


Ancient human parallel lineages within North America contributed to a coastal expansion.

Scheib CL, Li H, Desai T, Link V, Kendall C, Dewar G, Griffith PW, Mörseburg A, Johnson JR, Potter A, Kerr SL, Endicott P, Lindo J, Haber M, Xue Y, Tyler-Smith C, Sandhu MS, Lorenz JG, Randall TD, Faltyskova Z, Pagani L, Danecek P, O'Connell TC, Martz P, Boraas AS, Byrd BF, Leventhal A, Cambra R, Williamson R, Lesage L, Holguin B, Ygnacio-De Soto E, Rosas J, Metspalu M, Stock JT, Manica A, Scally A, Wegmann D, Malhi RS, Kivisild T.

Science. 2018 Jun 1;360(6392):1024-1027. doi: 10.1126/science.aar6851.


Test-retest reproducibility of accommodative facility measures in primary school children.

Adler P, Scally AJ, Barrett BT.

Clin Exp Optom. 2018 Nov;101(6):764-770. doi: 10.1111/cxo.12691. Epub 2018 May 8.


Temporal estimation in prediction motion tasks is biased by a moving destination.

Flavell JC, Barrett BT, Buckley JG, Harris JM, Scally AJ, Beebe NB, Cruickshank AG, Bennett SJ.

J Vis. 2018 Feb 1;18(2):5. doi: 10.1167/18.2.5.


The National Early Warning Score and its subcomponents recorded within ±24 h of emergency medical admission are poor predictors of hospital-acquired acute kidney injury.

Faisal M, Scally A, Elgaali MA, Richardson D, Beatson K, Mohammed MA.

Clin Med (Lond). 2018 Feb;18(1):47-53. doi: 10.7861/clinmedicine.18-1-47.


Development and External Validation of an Automated Computer-Aided Risk Score for Predicting Sepsis in Emergency Medical Admissions Using the Patient's First Electronically Recorded Vital Signs and Blood Test Results.

Faisal M, Scally A, Richardson D, Beatson K, Howes R, Speed K, Mohammed MA.

Crit Care Med. 2018 Apr;46(4):612-618. doi: 10.1097/CCM.0000000000002967.


Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species.

Nater A, Mattle-Greminger MP, Nurcahyo A, Nowak MG, de Manuel M, Desai T, Groves C, Pybus M, Sonay TB, Roos C, Lameira AR, Wich SA, Askew J, Davila-Ross M, Fredriksson G, de Valles G, Casals F, Prado-Martinez J, Goossens B, Verschoor EJ, Warren KS, Singleton I, Marques DA, Pamungkas J, Perwitasari-Farajallah D, Rianti P, Tuuga A, Gut IG, Gut M, Orozco-terWengel P, van Schaik CP, Bertranpetit J, Anisimova M, Scally A, Marques-Bonet T, Meijaard E, Krützen M.

Curr Biol. 2017 Nov 20;27(22):3576-3577. doi: 10.1016/j.cub.2017.11.020. No abstract available.


Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species.

Nater A, Mattle-Greminger MP, Nurcahyo A, Nowak MG, de Manuel M, Desai T, Groves C, Pybus M, Sonay TB, Roos C, Lameira AR, Wich SA, Askew J, Davila-Ross M, Fredriksson G, de Valles G, Casals F, Prado-Martinez J, Goossens B, Verschoor EJ, Warren KS, Singleton I, Marques DA, Pamungkas J, Perwitasari-Farajallah D, Rianti P, Tuuga A, Gut IG, Gut M, Orozco-terWengel P, van Schaik CP, Bertranpetit J, Anisimova M, Scally A, Marques-Bonet T, Meijaard E, Krützen M.

Curr Biol. 2017 Nov 20;27(22):3487-3498.e10. doi: 10.1016/j.cub.2017.09.047. Epub 2017 Nov 2. Erratum in: Curr Biol. 2017 Nov 20;27(22):3576-3577.


Estimating the human mutation rate from autozygous segments reveals population differences in human mutational processes.

Narasimhan VM, Rahbari R, Scally A, Wuster A, Mason D, Xue Y, Wright J, Trembath RC, Maher ER, van Heel DA, Auton A, Hurles ME, Tyler-Smith C, Durbin R.

Nat Commun. 2017 Aug 21;8(1):303. doi: 10.1038/s41467-017-00323-y.


Global clues to the nature of genomic mutations in humans.

Scally A.

Elife. 2017 May 17;6. pii: e27605. doi: 10.7554/eLife.27605.


The use of history to identify anterior cruciate ligament injuries in the acute trauma setting: the 'LIMP index'.

Ayre C, Hardy M, Scally A, Radcliffe G, Venkatesh R, Smith J, Guy S.

Emerg Med J. 2017 May;34(5):302-307. doi: 10.1136/emermed-2015-205610. Epub 2017 Jan 31.


Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data.

Seoighe C, Scally A.

PLoS Genet. 2017 Jan 17;13(1):e1006549. doi: 10.1371/journal.pgen.1006549. eCollection 2017 Jan.


Chimpanzee genomic diversity reveals ancient admixture with bonobos.

de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kühl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andrés AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T.

Science. 2016 Oct 28;354(6311):477-481. Epub 2016 Oct 27.


The mutation rate in human evolution and demographic inference.

Scally A.

Curr Opin Genet Dev. 2016 Dec;41:36-43. doi: 10.1016/j.gde.2016.07.008. Epub 2016 Aug 31. Review.


A Comparison of Spectacles Purchased Online and in UK Optometry Practice.

Alderson AJ, Green A, Whitaker D, Scally AJ, Elliott DB.

Optom Vis Sci. 2016 Oct;93(10):1196-202. doi: 10.1097/OPX.0000000000000955.


Mutation rates and the evolution of germline structure.

Scally A.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150137. doi: 10.1098/rstb.2015.0137.


BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data.

Narasimhan V, Danecek P, Scally A, Xue Y, Tyler-Smith C, Durbin R.

Bioinformatics. 2016 Jun 1;32(11):1749-51. doi: 10.1093/bioinformatics/btw044. Epub 2016 Jan 30.


Is objective and accurate cognitive assessment across the menstrual cycle possible? A feasibility study.

Farrar D, Neill J, Scally A, Tuffnell D, Marshall K.

SAGE Open Med. 2015 Jan 8;3:2050312114565198. doi: 10.1177/2050312114565198. eCollection 2015.


Prehension of a Flanked Target in Individuals With Amblyopia.

Buckley JG, Pacey IE, Panesar GK, Scally A, Barrett BT.

Invest Ophthalmol Vis Sci. 2015 Nov;56(12):7568-80. doi: 10.1167/iovs.15-16860.


Factors influencing accuracy of referral and the likelihood of false positive referral by optometrists in Bradford, United Kingdom.

Davey CJ, Scally AJ, Green C, Mitchell ES, Elliott DB.

J Optom. 2016 Jul-Sep;9(3):158-65. doi: 10.1016/j.optom.2015.10.007. Epub 2015 Nov 21.


Dizziness, but not falls rate, improves after routine cataract surgery: the role of refractive and spectacle changes.

Supuk E, Alderson A, Davey CJ, Green C, Litvin N, Scally AJ, Elliott DB.

Ophthalmic Physiol Opt. 2016 Mar;36(2):183-90. doi: 10.1111/opo.12243. Epub 2015 Nov 9.


Effectiveness of fluoroscopy-guided intra-articular steroid injection for hip osteoarthritis.

Subedi N, Chew NS, Chandramohan M, Scally AJ, Groves C.

Clin Radiol. 2015 Nov;70(11):1276-80. doi: 10.1016/j.crad.2015.07.002. Epub 2015 Sep 5.


Intermediate addition multifocals provide safe stair ambulation with adequate 'short-term' reading.

Elliott DB, Hotchkiss J, Scally AJ, Foster R, Buckley JG.

Ophthalmic Physiol Opt. 2016 Jan;36(1):60-8. doi: 10.1111/opo.12236. Epub 2015 Aug 25.


Rethinking the dispersal of Homo sapiens out of Africa.

Groucutt HS, Petraglia MD, Bailey G, Scerri EM, Parton A, Clark-Balzan L, Jennings RP, Lewis L, Blinkhorn J, Drake NA, Breeze PS, Inglis RH, Devès MH, Meredith-Williams M, Boivin N, Thomas MG, Scally A.

Evol Anthropol. 2015 Jul-Aug;24(4):149-64. doi: 10.1002/evan.21455.


Tracing the route of modern humans out of Africa by using 225 human genome sequences from Ethiopians and Egyptians.

Pagani L, Schiffels S, Gurdasani D, Danecek P, Scally A, Chen Y, Xue Y, Haber M, Ekong R, Oljira T, Mekonnen E, Luiselli D, Bradman N, Bekele E, Zalloua P, Durbin R, Kivisild T, Tyler-Smith C.

Am J Hum Genet. 2015 Jun 4;96(6):986-91. doi: 10.1016/j.ajhg.2015.04.019. Epub 2015 May 28.


What you see is what you step: the horizontal-vertical illusion increases toe clearance in older adults during stair ascent.

Foster RJ, Whitaker D, Scally AJ, Buckley JG, Elliott DB.

Invest Ophthalmol Vis Sci. 2015 May;56(5):2950-7. doi: 10.1167/iovs.14-16018.


Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding.

Xue Y, Prado-Martinez J, Sudmant PH, Narasimhan V, Ayub Q, Szpak M, Frandsen P, Chen Y, Yngvadottir B, Cooper DN, de Manuel M, Hernandez-Rodriguez J, Lobon I, Siegismund HR, Pagani L, Quail MA, Hvilsom C, Mudakikwa A, Eichler EE, Cranfield MR, Marques-Bonet T, Tyler-Smith C, Scally A.

Science. 2015 Apr 10;348(6231):242-245. doi: 10.1126/science.aaa3952. Epub 2015 Apr 9.


Sensitivity and specificity of the empirical lymphocyte genome sensitivity (LGS) assay: implications for improving cancer diagnostics.

Anderson D, Najafzadeh M, Gopalan R, Ghaderi N, Scally AJ, Britland ST, Jacobs BK, Reynolds PD, Davies J, Wright AL, Al-Ghazal S, Sharpe D, Denyer MC.

FASEB J. 2014 Oct;28(10):4563-70. doi: 10.1096/fj.14-254748. Epub 2014 Jul 25.


Custom and practice: a multi-center study of medicines reconciliation following admission in four acute hospitals in the UK.

Urban R, Armitage G, Morgan J, Marshall K, Blenkinsopp A, Scally A.

Res Social Adm Pharm. 2014 Mar-Apr;10(2):355-68. doi: 10.1016/j.sapharm.2013.06.009. Epub 2014 Feb 14.


Stratifying the risk of facial nerve palsy after benign parotid surgery.

Sethi N, Tay PH, Scally A, Sood S.

J Laryngol Otol. 2014 Feb;128(2):159-62. doi: 10.1017/S0022215113003502. Epub 2014 Jan 24.


Associations of circulating calcium and 25-hydroxyvitamin D with glucose metabolism in pregnancy: a cross-sectional study in European and South Asian women.

Whitelaw DC, Scally AJ, Tuffnell DJ, Davies TJ, Fraser WD, Bhopal RS, Wright J, Lawlor DA.

J Clin Endocrinol Metab. 2014 Mar;99(3):938-46. doi: 10.1210/jc.2013-2896. Epub 2014 Jan 1.


Assessment of cognitive function across pregnancy using CANTAB: a longitudinal study.

Farrar D, Tuffnell D, Neill J, Scally A, Marshall K.

Brain Cogn. 2014 Feb;84(1):76-84. doi: 10.1016/j.bandc.2013.11.003. Epub 2013 Dec 8.


Paediatric intensive care nurses' and doctors' perceptions on nurse-led protocol-directed ventilation weaning and extubation.

Tume LN, Scally A, Carter B.

Nurs Crit Care. 2014 Nov;19(6):292-303. doi: 10.1111/nicc.12055. Epub 2013 Nov 26.


Binocular summation and other forms of non-dominant eye contribution in individuals with strabismic amblyopia during habitual viewing.

Barrett BT, Panesar GK, Scally AJ, Pacey IE.

PLoS One. 2013 Oct 29;8(10):e77871. doi: 10.1371/journal.pone.0077871. eCollection 2013.

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