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Items: 15

1.

Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate.

Araya C, Häkkinen HM, Carcamo L, Cerda M, Savy T, Rookyard C, Peyriéras N, Clarke JDW.

Sci Rep. 2019 May 17;9(1):7699. doi: 10.1038/s41598-019-43789-0.

2.

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate.

Araya C, Häkkinen HM, Carcamo L, Cerda M, Savy T, Rookyard C, Peyriéras N, Clarke JDW.

Sci Rep. 2019 Feb 12;9(1):1835. doi: 10.1038/s41598-018-38455-w. Erratum in: Sci Rep. 2019 May 17;9(1):7699.

3.

ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish.

Cornet C, Calzolari S, Miñana-Prieto R, Dyballa S, van Doornmalen E, Rutjes H, Savy T, D'Amico D, Terriente J.

Int J Mol Sci. 2017 Apr 19;18(4). pii: E864. doi: 10.3390/ijms18040864.

4.

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction.

Dyballa S, Savy T, Germann P, Mikula K, Remesikova M, Špir R, Zecca A, Peyriéras N, Pujades C.

Elife. 2017 Jan 4;6. pii: e22268. doi: 10.7554/eLife.22268.

5.

An integrated modelling framework from cells to organism based on a cohort of digital embryos.

Villoutreix P, Delile J, Rizzi B, Duloquin L, Savy T, Bourgine P, Doursat R, Peyriéras N.

Sci Rep. 2016 Dec 2;6:37438. doi: 10.1038/srep37438.

6.

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.

Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P.

Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674.

7.

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis.

Castro-González C, Luengo-Oroz MA, Duloquin L, Savy T, Rizzi B, Desnoulez S, Doursat R, Kergosien YL, Ledesma-Carbayo MJ, Bourgine P, Peyriéras N, Santos A.

PLoS Comput Biol. 2014 Jun 19;10(6):e1003670. doi: 10.1371/journal.pcbi.1003670. eCollection 2014 Jun.

8.

Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis.

Recher G, Jouralet J, Brombin A, Heuzé A, Mugniery E, Hermel JM, Desnoulez S, Savy T, Herbomel P, Bourrat F, Peyriéras N, Jamen F, Joly JS.

Development. 2013 Dec;140(24):4860-9. doi: 10.1242/dev.099010. Epub 2013 Nov 6.

9.

3D+t morphological processing: applications to embryogenesis image analysis.

Luengo-Oroz MA, Pastor-Escuredo D, Castro-Gonzalez C, Faure E, Savy T, Lombardot B, Rubio-Guivernau JL, Duloquin L, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A.

IEEE Trans Image Process. 2012 Aug;21(8):3518-30. doi: 10.1109/TIP.2012.2197007. Epub 2012 May 1.

PMID:
22562755
10.

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos.

Castro C, Luengo-Oroz MÁ, Douloquin L, Savy T, Melani C, Desnoulez S, Bourgine P, Peyriéras N, Ledesma-Carbayo MJ, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:6841-4. doi: 10.1109/IEMBS.2011.6091687.

PMID:
22255910
11.

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy.

Luengo-Oroz MA, Rubio-Guivernau JL, Faure E, Savy T, Duloquin L, Olivier N, Pastor D, Ledesma-Carbayo M, Débarre D, Bourgine P, Beaurepaire E, Peyriéras N, Santos A.

IEEE Trans Image Process. 2012 Apr;21(4):2335-40. doi: 10.1109/TIP.2011.2177911. Epub 2011 Dec 1.

PMID:
22155959
12.

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification.

Castro-Gonzalez C, Luengo-Oroz MA, Douloquin L, Savy T, Melani C, Desnoulez S, Ledesma-Carbayo MJ, Bourginey P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:5520-3. doi: 10.1109/IEMBS.2010.5626769.

PMID:
21096468
13.

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

Olivier N, Luengo-Oroz MA, Duloquin L, Faure E, Savy T, Veilleux I, Solinas X, Débarre D, Bourgine P, Santos A, Peyriéras N, Beaurepaire E.

Science. 2010 Aug 20;329(5994):967-71. doi: 10.1126/science.1189428.

14.

Combining sea urchin embryo cell lineages by error-tolerant graph matching.

Rubio-Guivernau JL, Luengo-Oroz MA, Duloquin L, Savy T, Peyrieras N, Bourgine P, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:5918-21. doi: 10.1109/IEMBS.2009.5334851.

PMID:
19965057
15.

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements.

Pastor D, Luengo-Oroz MA, Lombardot B, Gonzalvez I, Duloquin L, Savy T, Bourgine P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:970-3. doi: 10.1109/IEMBS.2009.5333756.

PMID:
19964254

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