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Items: 49


Draft Genome Sequences of Five Proteobacteria Isolated from Lechuguilla Cave, New Mexico, USA, and Insights into Taxonomy and Quorum Sensing.

Gan HM, Wengert PC, Barton HA, Hudson AO, Savka MA.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00913-19. doi: 10.1128/MRA.00913-19.


Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine (Vitis vinifera) Crown Galls Collected Across the Northern Hemisphere.

Gan HM, Szegedi E, Fersi R, Chebil S, Kovács L, Kawaguchi A, Hudson AO, Burr TJ, Savka MA.

Front Microbiol. 2019 Aug 13;10:1896. doi: 10.3389/fmicb.2019.01896. eCollection 2019.


The Synthesis and Role of β-Alanine in Plants.

Parthasarathy A, Savka MA, Hudson AO.

Front Plant Sci. 2019 Jul 18;10:921. doi: 10.3389/fpls.2019.00921. eCollection 2019. Review.


Isolation, Whole-Genome Sequencing, and Annotation of Yimella sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168.

Parthasarathy A, Wong NH, Burns ND, Aziz-Dickerson AH, Dweh J, Buchanan D, Savka MA, Hudson AO.

Microbiol Resour Announc. 2019 Apr 25;8(17). pii: e00329-19. doi: 10.1128/MRA.00329-19.


Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4.

Gan HM, Lee MVL, Savka MA.

PeerJ. 2019 Feb 8;7:e6366. doi: 10.7717/peerj.6366. eCollection 2019.


Is Plastic Pollution in Aquatic and Terrestrial Environments a Driver for the Transmission of Pathogens and the Evolution of Antibiotic Resistance?

Parthasarathy A, Tyler AC, Hoffman MJ, Savka MA, Hudson AO.

Environ Sci Technol. 2019 Feb 19;53(4):1744-1745. doi: 10.1021/acs.est.8b07287. Epub 2019 Jan 31. No abstract available.


High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall.

Gan HM, Lee MVJ, Savka MA.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01045-18. doi: 10.1128/MRA.01045-18. eCollection 2018 Sep.


Whole-Genome Sequencing and Annotation of Exiguobacterium sp. RIT 452, an Antibiotic-Producing Strain Isolated from a Pond Located on the Campus of the Rochester Institute of Technology.

Parthasarathy A, Wong NH, Cavanaugh NT, Steiner KK, Wengert PC, Savka MA, Hudson AO.

Microbiol Resour Announc. 2018 Nov 1;7(17). pii: e01341-18. doi: 10.1128/MRA.01341-18. eCollection 2018 Nov.


Isolation and genomic characterization of six endophytic bacteria isolated from Saccharum sp (sugarcane): Insights into antibiotic, secondary metabolite and quorum sensing metabolism.

Parthasarathy A, Gan HM, Wong NH, Savka MA, Steiner KK, Henry KR, Hudson AO.

J Genomics. 2018 Oct 2;6:117-121. doi: 10.7150/jgen.28335. eCollection 2018.


A Three-Ring Circus: Metabolism of the Three Proteogenic Aromatic Amino Acids and Their Role in the Health of Plants and Animals.

Parthasarathy A, Cross PJ, Dobson RCJ, Adams LE, Savka MA, Hudson AO.

Front Mol Biosci. 2018 Apr 6;5:29. doi: 10.3389/fmolb.2018.00029. eCollection 2018. Review.


One More Decade of Agrobacterium Taxonomy.

Gan HM, Savka MA.

Curr Top Microbiol Immunol. 2018;418:1-14. doi: 10.1007/82_2018_81. Review.


Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis.

Gan HM, Thomas BN, Cavanaugh NT, Morales GH, Mayers AN, Savka MA, Hudson AO.

PeerJ. 2017 Nov 14;5:e4030. doi: 10.7717/peerj.4030. eCollection 2017.


Whole-Genome Sequences of Salmonella enterica subsp. enterica Serovar Typhimurium Strains TT6675 and TT9097 Employed in the Isolation and Characterization of a Giant Phage Mutant Collection.

Gan HM, Eng WWH, Barton MK, Adams LE, Samsudin NA, Bartl AJ, Hudson AO, Savka MA, Thomas JA.

Genome Announc. 2017 Aug 24;5(34). pii: e00857-17. doi: 10.1128/genomeA.00857-17.


In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas.

Tran PN, Savka MA, Gan HM.

Front Microbiol. 2017 Jul 12;8:1296. doi: 10.3389/fmicb.2017.01296. eCollection 2017.


Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium).

Kumar HK, Gan HM, Tan MH, Eng WW, Barton HA, Hudson AO, Savka MA.

J Genomics. 2017 Jan 18;5:12-15. doi: 10.7150/jgen.17863. eCollection 2017.


Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family.

Gan HM, Dailey LK, Halliday N, Williams P, Hudson AO, Savka MA.

PeerJ. 2016 Aug 30;4:e2332. doi: 10.7717/peerj.2332. eCollection 2016.


Identification and Partial Characterization of a Novel UDP-N-Acetylenolpyruvoylglucosamine Reductase/UDP-N-Acetylmuramate:l-Alanine Ligase Fusion Enzyme from Verrucomicrobium spinosum DSM 4136(T).

Naqvi KF, Patin D, Wheatley MS, Savka MA, Dobson RC, Gan HM, Barreteau H, Blanot D, Mengin-Lecreulx D, Hudson AO.

Front Microbiol. 2016 Mar 23;7:362. doi: 10.3389/fmicb.2016.00362. eCollection 2016.


Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap.

Lai WX, Gan HM, Hudson AO, Savka MA.

Genome Announc. 2016 Feb 4;4(1). pii: e01695-15. doi: 10.1128/genomeA.01695-15.


Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans).

Tran PN, Tan NE, Lee YP, Gan HM, Polter SJ, Dailey LK, Hudson AO, Savka MA.

Genome Announc. 2015 Nov 19;3(6). pii: e01319-15. doi: 10.1128/genomeA.01319-15.


Isolation, Identification, Whole-Genome Sequencing, and Annotation of Four Bacillus Species, B. anthracis RIT375, B. circulans RIT379, B. altitudinis RIT380, and B. megaterium RIT381, from Internal Stem Tissue of the Insulin Plant Costus igneus.

Polter SJ, Caraballo AA, Lee YP, Eng WW, Gan HM, Wheatley MS, Savka MA, Thomas BN, Hudson AO.

Genome Announc. 2015 Jul 30;3(4). pii: e00847-15. doi: 10.1128/genomeA.00847-15.


Whole-Genome Sequence and Annotation of Octopine-Utilizing Pseudomonas kilonensis (Previously P. fluorescens) Strain 1855-344.

Eng WW, Gan HM, Gan HY, Hudson AO, Savka MA.

Genome Announc. 2015 May 14;3(3). pii: e00463-15. doi: 10.1128/genomeA.00463-15.


Chemical composition and disruption of quorum sensing signaling in geographically diverse United States propolis.

Savka MA, Dailey L, Popova M, Mihaylova R, Merritt B, Masek M, Le P, Nor SR, Ahmad M, Hudson AO, Bankova V.

Evid Based Complement Alternat Med. 2015;2015:472593. doi: 10.1155/2015/472593. Epub 2015 Apr 15.


Whole-Genome Sequencing and Annotation of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum annuum (Bird's Eye Chili) and Capsicum chinense (Yellow Lantern Chili), Respectively.

Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Naqvi KF, Foxhall TE, Anauo MJ, Baldwin ML, Burkhardt RN, O'Bryon IG, Dailey LK, Busairi NI, Keith RC, Khair MH, Rasul MZ, Rosdi NA, Mountzouros JR, Rhoads AC, Selochan MA, Tautanov TB, Polter SJ, Marks KD, Caraballo AA, Hudson AO.

Genome Announc. 2015 Apr 16;3(2). pii: e00288-15. doi: 10.1128/genomeA.00288-15.


Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.

Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA.

Front Cell Infect Microbiol. 2015 Jan 8;4:188. doi: 10.3389/fcimb.2014.00188. eCollection 2014.


Whole-Genome Sequences of Five Oligotrophic Bacteria Isolated from Deep within Lechuguilla Cave, New Mexico.

Gan HY, Gan HM, Tarasco AM, Busairi NI, Barton HA, Hudson AO, Savka MA.

Genome Announc. 2014 Nov 6;2(6). pii: e01133-14. doi: 10.1128/genomeA.01133-14.


L,L-diaminopimelate aminotransferase (DapL): a putative target for the development of narrow-spectrum antibacterial compounds.

Triassi AJ, Wheatley MS, Savka MA, Gan HM, Dobson RC, Hudson AO.

Front Microbiol. 2014 Sep 26;5:509. doi: 10.3389/fmicb.2014.00509. eCollection 2014.


Whole-genome sequences of 13 endophytic bacteria isolated from shrub willow (salix) grown in geneva, new york.

Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Smart LB, Fabio ES, Hudson AO.

Genome Announc. 2014 May 8;2(3). pii: e00288-14. doi: 10.1128/genomeA.00288-14.


High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam).

Gan HM, Triassi AJ, Wheatley MS, Savka MA, Hudson AO.

Genome Announc. 2014 Mar 13;2(2). pii: e00170-14. doi: 10.1128/genomeA.00170-14.


Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

Gan HM, Hudson AO, Rahman AY, Chan KG, Savka MA.

BMC Genomics. 2013 Jun 28;14:431. doi: 10.1186/1471-2164-14-431.


Biochemical characterization of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase (MurE) from Verrucomicrobium spinosum DSM 4136(T.).

McGroty SE, Pattaniyil DT, Patin D, Blanot D, Ravichandran AC, Suzuki H, Dobson RC, Savka MA, Hudson AO.

PLoS One. 2013 Jun 13;8(6):e66458. doi: 10.1371/journal.pone.0066458. Print 2013.


Whole-genome sequence of Enterobacter sp. strain SST3, an endophyte isolated from Jamaican sugarcane (Saccharum sp.) stalk tissue.

Gan HM, McGroty SE, Chew TH, Chan KG, Buckley LJ, Savka MA, Hudson AO.

J Bacteriol. 2012 Nov;194(21):5981-2. doi: 10.1128/JB.01469-12.


Genome sequence of Methylobacterium sp. strain GXF4, a xylem-associated bacterium isolated from Vitis vinifera L. grapevine.

Gan HM, Chew TH, Hudson AO, Savka MA.

J Bacteriol. 2012 Sep;194(18):5157-8. doi: 10.1128/JB.01201-12.


Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine.

Gan HM, Chew TH, Hudson AO, Savka MA.

J Bacteriol. 2012 Sep;194(18):5137-8. doi: 10.1128/JB.01159-12.


Inhibition of quorum sensing and efflux pump system by trifluoromethyl ketone proton pump inhibitors.

Varga ZG, Armada A, Cerca P, Amaral L, Mior Ahmad Subki MA, Savka MA, Szegedi E, Kawase M, Motohashi N, Molnár J.

In Vivo. 2012 Mar-Apr;26(2):277-85.


A novel property of propolis (bee glue): anti-pathogenic activity by inhibition of N-acyl-homoserine lactone mediated signaling in bacteria.

Bulman Z, Le P, Hudson AO, Savka MA.

J Ethnopharmacol. 2011 Dec 8;138(3):788-97. doi: 10.1016/j.jep.2011.10.029. Epub 2011 Oct 28.


LasR receptor for detection of long-chain quorum-sensing signals: identification of N-acyl-homoserine lactones encoded by the avsI locus of Agrobacterium vitis.

Savka MA, Le PT, Burr TJ.

Curr Microbiol. 2011 Jan;62(1):101-10. doi: 10.1007/s00284-010-9679-1. Epub 2010 Jun 1.


Quorum-sensing signal production by Agrobacterium vitis strains and their tumor-inducing and tartrate-catabolic plasmids.

Lowe N, Gan HM, Chakravartty V, Scott R, Szegedi E, Burr TJ, Savka MA.

FEMS Microbiol Lett. 2009 Jul;296(1):102-9. doi: 10.1111/j.1574-6968.2009.01627.x. Epub 2009 May 11.


Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation.

Gan HM, Buckley L, Szegedi E, Hudson AO, Savka MA.

J Bacteriol. 2009 Apr;191(8):2551-60. doi: 10.1128/JB.01692-08. Epub 2009 Feb 6.


Long- and short-chain plant-produced bacterial N-acyl-homoserine lactones become components of phyllosphere, rhizosphere, and soil.

Scott RA, Weil J, Le PT, Williams P, Fray RG, von Bodman SB, Savka MA.

Mol Plant Microbe Interact. 2006 Mar;19(3):227-39.


Engineering bacterial competitiveness and persistence in the phytosphere.

Savka MA, Dessaux Y, Oger P, Rossbach S.

Mol Plant Microbe Interact. 2002 Sep;15(9):866-74. Review.


Auxin-dependent cell expansion mediated by overexpressed auxin-binding protein 1.

Jones AM, Im KH, Savka MA, Wu MJ, DeWitt NG, Shillito R, Binns AN.

Science. 1998 Nov 6;282(5391):1114-7.


Translocation and exudation of tumor metabolites in crown galled plants.

Savka MA, Black RC, Binns AN, Farrand SK.

Mol Plant Microbe Interact. 1996 May;9(4):310-3.


Notice of Retraction.

Dhir SK, Dhir S, Savka MA, Belanger F, Kriz AL, Farrand SK, Widholm JM.

Plant Physiol. 1993 May;102(1):331. No abstract available.


Regeneration of Transgenic Soybean (Glycine max) Plants from Electroporated Protoplasts.

Dhir SK, Dhir S, Savka MA, Belanger F, Kriz AL, Farrand SK, Widholm JM.

Plant Physiol. 1992 May;99(1):81-8.


Mannityl opine accumulation and exudation by transgenic tobacco.

Savka MA, Farrand SK.

Plant Physiol. 1992 Feb;98(2):784-9.


Induction of Pseudoactinorhizae by the Plant Pathogen Agrobacterium rhizogenes.

Berg RH, Liu L, Dawson JO, Savka MA, Farrand SK.

Plant Physiol. 1992 Feb;98(2):777-9.

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