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Items: 31

1.

Avoidance of Trinucleotide Corresponding to Consensus Protospacer Adjacent Motif Controls the Efficiency of Prespacer Selection during Primed Adaptation.

Musharova O, Vyhovskyi D, Medvedeva S, Guzina J, Zhitnyuk Y, Djordjevic M, Severinov K, Savitskaya E.

MBio. 2018 Dec 4;9(6). pii: e02169-18. doi: 10.1128/mBio.02169-18.

2.

CRISPR-Cas adaptation in Escherichia coli requires RecBCD helicase but not nuclease activity, is independent of homologous recombination, and is antagonized by 5' ssDNA exonucleases.

Radovcic M, Killelea T, Savitskaya E, Wettstein L, Bolt EL, Ivancic-Bace I.

Nucleic Acids Res. 2018 Nov 2;46(19):10173-10183. doi: 10.1093/nar/gky799.

3.

Spacer-length DNA intermediates are associated with Cas1 in cells undergoing primed CRISPR adaptation.

Musharova O, Klimuk E, Datsenko KA, Metlitskaya A, Logacheva M, Semenova E, Severinov K, Savitskaya E.

Nucleic Acids Res. 2017 Apr 7;45(6):3297-3307. doi: 10.1093/nar/gkx097.

4.

The action of Escherichia coli CRISPR-Cas system on lytic bacteriophages with different lifestyles and development strategies.

Strotskaya A, Savitskaya E, Metlitskaya A, Morozova N, Datsenko KA, Semenova E, Severinov K.

Nucleic Acids Res. 2017 Feb 28;45(4):1946-1957. doi: 10.1093/nar/gkx042.

5.

Dynamics of Escherichia coli type I-E CRISPR spacers over 42 000 years.

Savitskaya E, Lopatina A, Medvedeva S, Kapustin M, Shmakov S, Tikhonov A, Artamonova II, Logacheva M, Severinov K.

Mol Ecol. 2017 Apr;26(7):2019-2026. doi: 10.1111/mec.13961. Epub 2017 Jan 17.

6.

Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation.

Kuznedelov K, Mekler V, Lemak S, Tokmina-Lukaszewska M, Datsenko KA, Jain I, Savitskaya E, Mallon J, Shmakov S, Bothner B, Bailey S, Yakunin AF, Severinov K, Semenova E.

Nucleic Acids Res. 2016 Dec 15;44(22):10849-10861. Epub 2016 Oct 13.

7.

Diversity of CRISPR-Cas-Mediated Mechanisms of Adaptive Immunity in Prokaryotes and Their Application in Biotechnology.

Savitskaya EE, Musharova OS, Severinov KV.

Biochemistry (Mosc). 2016 Jul;81(7):653-61. doi: 10.1134/S0006297916070026. Review.

8.

Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex.

Semenova E, Savitskaya E, Musharova O, Strotskaya A, Vorontsova D, Datsenko KA, Logacheva MD, Severinov K.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7626-31. doi: 10.1073/pnas.1602639113. Epub 2016 Jun 20.

9.

Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery.

Vorontsova D, Datsenko KA, Medvedeva S, Bondy-Denomy J, Savitskaya EE, Pougach K, Logacheva M, Wiedenheft B, Davidson AR, Severinov K, Semenova E.

Nucleic Acids Res. 2015 Dec 15;43(22):10848-60. doi: 10.1093/nar/gkv1261. Epub 2015 Nov 19.

10.

The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system.

Semenova E, Kuznedelov K, Datsenko KA, Boudry PM, Savitskaya EE, Medvedeva S, Beloglazova N, Logacheva M, Yakunin AF, Severinov K.

Nucleic Acids Res. 2015 Jul 13;43(12):6049-61. doi: 10.1093/nar/gkv546. Epub 2015 May 26.

11.

Rapid Multiplex Creation of Escherichia coli Strains Capable of Interfering with Phage Infection Through CRISPR.

Strotksaya A, Semenova E, Savitskaya E, Severinov K.

Methods Mol Biol. 2015;1311:147-59. doi: 10.1007/978-1-4939-2687-9_9.

12.

The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource.

Craig T, Smelick C, Tacutu R, Wuttke D, Wood SH, Stanley H, Janssens G, Savitskaya E, Moskalev A, Arking R, de Magalhães JP.

Nucleic Acids Res. 2015 Jan;43(Database issue):D873-8. doi: 10.1093/nar/gku843. Epub 2014 Sep 17.

13.

Pervasive generation of oppositely oriented spacers during CRISPR adaptation.

Shmakov S, Savitskaya E, Semenova E, Logacheva MD, Datsenko KA, Severinov K.

Nucleic Acids Res. 2014 May;42(9):5907-16. doi: 10.1093/nar/gku226. Epub 2014 Apr 11.

14.

High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli.

Savitskaya E, Semenova E, Dedkov V, Metlitskaya A, Severinov K.

RNA Biol. 2013 May;10(5):716-25. doi: 10.4161/rna.24325. Epub 2013 Apr 25.

15.

Interaction between a pair of gypsy insulators or between heterologous gypsy and Wari insulators modulates Flp site-specific recombination in Drosophila melanogaster.

Krivega M, Savitskaya E, Krivega I, Karakozova M, Parshikov A, Golovnin A, Georgiev P.

Chromosoma. 2010 Aug;119(4):425-34. doi: 10.1007/s00412-010-0268-7. Epub 2010 Mar 31.

PMID:
20354861
16.

Zeste can facilitate long-range enhancer-promoter communication and insulator bypass in Drosophila melanogaster.

Kostyuchenko M, Savitskaya E, Koryagina E, Melnikova L, Karakozova M, Georgiev P.

Chromosoma. 2009 Oct;118(5):665-74. doi: 10.1007/s00412-009-0226-4. Epub 2009 Jul 4.

PMID:
19578867
17.

The non-methylated DNA-binding function of Kaiso is not required in early Xenopus laevis development.

Ruzov A, Savitskaya E, Hackett JA, Reddington JP, Prokhortchouk A, Madej MJ, Chekanov N, Li M, Dunican DS, Prokhortchouk E, Pennings S, Meehan RR.

Development. 2009 Mar;136(5):729-38. doi: 10.1242/dev.025569. Epub 2009 Jan 21.

18.

Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster.

Kostyuchenko MV, Savitskaya EE, Volkov IA, Golovnin AK, Georgiev PG.

Dokl Biochem Biophys. 2008 Jul-Aug;421:239-43. No abstract available.

PMID:
18853781
19.

Red flag on the white reporter: a versatile insulator abuts the white gene in Drosophila and is omnipresent in mini-white constructs.

Chetverina D, Savitskaya E, Maksimenko O, Melnikova L, Zaytseva O, Parshikov A, Galkin AV, Georgiev P.

Nucleic Acids Res. 2008 Feb;36(3):929-37. Epub 2007 Dec 17.

20.

PRE-mediated bypass of two Su(Hw) insulators targets PcG proteins to a downstream promoter.

Comet I, Savitskaya E, Schuettengruber B, Nègre N, Lavrov S, Parshikov A, Juge F, Gracheva E, Georgiev P, Cavalli G.

Dev Cell. 2006 Jul;11(1):117-24.

21.

Study of the regulatory region of gene white of Drosophila melanogaster.

Kostyuchenko MV, Savitskaya EE, Karakozova MV, Georgiev PG.

Dokl Biochem Biophys. 2005 Nov-Dec;405:383-7. No abstract available.

PMID:
16480133
22.

Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.

Savitskaya E, Melnikova L, Kostuchenko M, Kravchenko E, Pomerantseva E, Boikova T, Chetverina D, Parshikov A, Zobacheva P, Gracheva E, Galkin A, Georgiev P.

Mol Cell Biol. 2006 Feb;26(3):754-61.

23.

Transposition of Regulatory Elements by P-Element-Mediated Rearrangements in Drosophila melanogaster.

Pomerantseva E, Biryukova I, Silicheva R, Savitskaya E, Golovnin A, Georgiev P.

Genetics. 2006 Apr;172(4):2283-91. Epub 2005 Dec 30.

24.

Pairing between gypsy insulators facilitates the enhancer action in trans throughout the Drosophila genome.

Kravchenko E, Savitskaya E, Kravchuk O, Parshikov A, Georgiev P, Savitsky M.

Mol Cell Biol. 2005 Nov;25(21):9283-91.

25.

The promoter region of the yellow gene of Drosophila melanogaster contains excess regulatory elements.

Kostyuchenko MV, Georgiev PG, Savitskaya EE.

Dokl Biochem Biophys. 2004 Nov-Dec;399:374-5. No abstract available.

PMID:
15714950
26.

Total nucleon-nucleus reaction cross sections calculated in the frame of the cascade model.

Sannikov AV, Savitskaya EN.

Radiat Prot Dosimetry. 2004;110(1-4):27-31.

PMID:
15353617
27.

The Mod(mdg4) component of the Su(Hw) insulator inserted in the P transposon can repress its mobility in Drosophila melanogaster.

Karakozova M, Savitskaya E, Melnikova L, Parshikov A, Georgiev P.

Genetics. 2004 Jul;167(3):1275-80.

28.

Cis-modifiers of the yellow gene repression induced by the Su(Hw) insulator in the absence of the Mod(mdg4) protein in Drosophila melanogaster.

Karakozova MV, Savitskaya EE, Parshikov AF, Georgiev PG.

Dokl Biochem Biophys. 2003 Mar-Apr;389:110-3. No abstract available.

PMID:
12856417
29.

An endogenous Su(Hw) insulator separates the yellow gene from the Achaete-scute gene complex in Drosophila.

Golovnin A, Biryukova I, Romanova O, Silicheva M, Parshikov A, Savitskaya E, Pirrotta V, Georgiev P.

Development. 2003 Jul;130(14):3249-58. Erratum in: Development. 2008 Feb;135(4):787. Birukova, Inna [corrected to Biryukova, Inna].

30.

The study of the mechanism of action of chlortetracycline and sekasin on Rickettsia prowazeki.

SAVITSKAYA EP, ZUBOK LP.

Zh Mikrobiol Epidemiol Immunobiol. 1961;32:509-14. No abstract available.

PMID:
14038978
31.

Experience with growing Rickettsia burneti in tissue culture.

SAVITSKAYA EP, PLOSKIREV NV, TSURIKOV FF.

Zh Mikrobiol Epidemiol Immunobiol. 1961;32:1130-6. No abstract available.

PMID:
14038977

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