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Beyond Bergmann's rule: Global variability in human body composition is associated with annual average precipitation and annual temperature volatility.

Wells JC, Saunders MA, Lea AS, Cortina-Borja M, Shirley MK.

Am J Phys Anthropol. 2019 Sep;170(1):75-87. doi: 10.1002/ajpa.23890. Epub 2019 Jul 18.


Repeated subcutaneous administration of PT150 has dose-dependent effects on sign tracking in male Japanese quail.

Rice BA, Saunders MA, Jagielo-Miller JE, Prendergast MA, Akins CK.

Exp Clin Psychopharmacol. 2019 Dec;27(6):515-521. doi: 10.1037/pha0000275. Epub 2019 Mar 21.


Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.

Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT.

Nat Protoc. 2019 Mar;14(3):639-702. doi: 10.1038/s41596-018-0098-2.


DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.

Yang L, Ebrahim A, Lloyd CJ, Saunders MA, Palsson BO.

BMC Syst Biol. 2019 Jan 9;13(1):2. doi: 10.1186/s12918-018-0675-6.


Return to emergency department after pediatric urology procedures.

Naoum NK, Chua ME, Ming JM, Santos JD, Saunders MA, Lopes RI, Koyle MA, Farhat WA.

J Pediatr Urol. 2019 Feb;15(1):42.e1-42.e6. doi: 10.1016/j.jpurol.2018.10.021. Epub 2018 Nov 2.


An improved model of ethanol and nicotine co-use in female P rats: Effects of naltrexone, varenicline, and the selective nicotinic α6β2* antagonist r-bPiDI.

Maggio SE, Saunders MA, Nixon K, Prendergast MA, Zheng G, Crooks PA, Dwoskin LP, Bell RL, Bardo MT.

Drug Alcohol Depend. 2018 Dec 1;193:154-161. doi: 10.1016/j.drugalcdep.2018.09.008. Epub 2018 Oct 17.


If you build it, they may not come: modifiable barriers to patient portal use among pre- and post-kidney transplant patients.

Lockwood MB, Dunn-Lopez K, Pauls H, Burke L, Shah SD, Saunders MA.

JAMIA Open. 2018 Jul 10;1(2):255-264. doi: 10.1093/jamiaopen/ooy024. eCollection 2018 Oct.


Effects of the nicotinic agonist varenicline, nicotinic antagonist r-bPiDI, and DAT inhibitor (R)-modafinil on co-use of ethanol and nicotine in female P rats.

Maggio SE, Saunders MA, Baxter TA, Nixon K, Prendergast MA, Zheng G, Crooks P, Dwoskin LP, Slack RD, Newman AH, Bell RL, Bardo MT.

Psychopharmacology (Berl). 2018 May;235(5):1439-1453. doi: 10.1007/s00213-018-4853-4. Epub 2018 Feb 18.


Broad-spectrum protein kinase inhibition by the staurosporine analog KT-5720 reverses ethanol withdrawal-associated loss of NeuN/Fox-3.

Reynolds AR, Saunders MA, Berry JN, Sharrett-Field LJ, Winchester S, Prendergast MA.

Alcohol. 2017 Nov;64:37-43. doi: 10.1016/j.alcohol.2017.05.006. Epub 2017 Aug 30.


Impact of smartphone digital photography, email, and media communication on emergency room visits post-hypospadias repair.

Chua ME, Saunders MA, Bowlin PR, Ming JM, Lopes RI, Farhat WA, Dos Santos J.

Can Urol Assoc J. 2017 Mar-Apr;11(3-4):E134-E137. doi: 10.5489/cuaj.4170. Epub 2017 Apr 11.


Reliable and efficient solution of genome-scale models of Metabolism and macromolecular Expression.

Ma D, Yang L, Fleming RM, Thiele I, Palsson BO, Saunders MA.

Sci Rep. 2017 Jan 18;7:40863. doi: 10.1038/srep40863.


Identification of Neuroprotective Spoxazomicin and Oxachelin Glycosides via Chemoenzymatic Glycosyl-Scanning.

Zhang J, Hughes RR, Saunders MA, Elshahawi SI, Ponomareva LV, Zhang Y, Winchester SR, Scott SA, Sunkara M, Morris AJ, Prendergast MA, Shaaban KA, Thorson JS.

J Nat Prod. 2017 Jan 27;80(1):12-18. doi: 10.1021/acs.jnatprod.6b00949. Epub 2016 Dec 28.


Spoxazomicin D and Oxachelin C, Potent Neuroprotective Carboxamides from the Appalachian Coal Fire-Associated Isolate Streptomyces sp. RM-14-6.

Shaaban KA, Saunders MA, Zhang Y, Tran T, Elshahawi SI, Ponomareva LV, Wang X, Zhang J, Copley GC, Sunkara M, Kharel MK, Morris AJ, Hower JC, Tremblay MS, Prendergast MA, Thorson JS.

J Nat Prod. 2017 Jan 27;80(1):2-11. doi: 10.1021/acs.jnatprod.6b00948. Epub 2016 Dec 28.


Principles of proteome allocation are revealed using proteomic data and genome-scale models.

Yang L, Yurkovich JT, Lloyd CJ, Ebrahim A, Saunders MA, Palsson BO.

Sci Rep. 2016 Nov 18;6:36734. doi: 10.1038/srep36734.


solveME: fast and reliable solution of nonlinear ME models.

Yang L, Ma D, Ebrahim A, Lloyd CJ, Saunders MA, Palsson BO.

BMC Bioinformatics. 2016 Sep 22;17(1):391.


Conditions for duality between fluxes and concentrations in biochemical networks.

Fleming RMT, Vlassis N, Thiele I, Saunders MA.

J Theor Biol. 2016 Nov 21;409:1-10. doi: 10.1016/j.jtbi.2016.06.033. Epub 2016 Jun 23.


Ethanol Stimulates Endoplasmic Reticulum Inositol Triphosphate and Sigma Receptors to Promote Withdrawal-Associated Loss of Neuron-Specific Nuclear Protein/Fox-3.

Reynolds AR, Saunders MA, Prendergast MA.

Alcohol Clin Exp Res. 2016 Jul;40(7):1454-61. doi: 10.1111/acer.13097. Epub 2016 May 14.


Corticosterone enhances N-methyl-D-aspartate receptor signaling to promote isolated ventral tegmental area activity in a reconstituted mesolimbic dopamine pathway.

Berry JN, Saunders MA, Sharrett-Field LJ, Reynolds AR, Bardo MT, Pauly JR, Prendergast MA.

Brain Res Bull. 2016 Jan;120:159-65. doi: 10.1016/j.brainresbull.2015.11.018. Epub 2015 Nov 26.


Correction to "Terfestatins B and C, New p-Terphenyl Glycosides Produced by Streptomyces sp. RM-5-8".

Wang X, Reynolds AR, Elshahawi SI, Shaaban KA, Ponomareva LV, Saunders MA, Elgumati IS, Zhang Y, Copley GC, Hower JC, Sunkara M, Morris AJ, Kharel MK, Van Lanen SG, Prendergast MA, Thorson JS.

Org Lett. 2015 Nov 6;17(21):5515. doi: 10.1021/acs.orglett.5b02788. Epub 2015 Oct 12. No abstract available.


Group 1 mGlu-family proteins promote neuroadaptation to ethanol and withdrawal-associated hippocampal damage.

Reynolds AR, Williams LA, Saunders MA, Prendergast MA.

Drug Alcohol Depend. 2015 Nov 1;156:213-220. doi: 10.1016/j.drugalcdep.2015.09.013. Epub 2015 Sep 26.


Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10.


Acute oral administration of the novel, competitive and selective glucocorticoid receptor antagonist ORG 34517 reduces the severity of ethanol withdrawal and related hypothalamic-pituitary-adrenal axis activation.

Reynolds AR, Saunders MA, Brewton HW, Winchester SR, Elgumati IS, Prendergast MA.

Drug Alcohol Depend. 2015 Sep 1;154:100-4. doi: 10.1016/j.drugalcdep.2015.06.018. Epub 2015 Jun 22.


Terfestatins B and C, New p-Terphenyl Glycosides Produced by Streptomyces sp. RM-5-8.

Wang X, Reynolds AR, Elshahawi SI, Shaaban KA, Ponomareva LV, Saunders MA, Elgumati IS, Zhang Y, Copley GC, Hower JC, Sunkara M, Morris AJ, Kharel MK, Van Lanen SG, Prendergast MA, Thorson JS.

Org Lett. 2015 Jun 5;17(11):2796-9. doi: 10.1021/acs.orglett.5b01203. Epub 2015 May 11. Erratum in: Org Lett. 2015 Nov 6;17(21):5515.



Meng X, Saunders MA, Mahoney MW.

SIAM J Sci Comput. 2014;36(2):C95-C118.


Algorithm 937: MINRES-QLP for Symmetric and Hermitian Linear Equations and Least-Squares Problems.

Choi SC, Saunders MA.

ACM Trans Math Softw. 2014 Feb;40(2). doi: 10.1145/2527267.


A visual motion detection circuit suggested by Drosophila connectomics.

Takemura SY, Bharioke A, Lu Z, Nern A, Vitaladevuni S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P, Zhao T, Horne JA, Fetter RD, Takemura S, Blazek K, Chang LA, Ogundeyi O, Saunders MA, Shapiro V, Sigmund C, Rubin GM, Scheffer LK, Meinertzhagen IA, Chklovskii DB.

Nature. 2013 Aug 8;500(7461):175-81. doi: 10.1038/nature12450.


Robust flux balance analysis of multiscale biochemical reaction networks.

Sun Y, Fleming RM, Thiele I, Saunders MA.

BMC Bioinformatics. 2013 Jul 30;14:240. doi: 10.1186/1471-2105-14-240.


Single-stranded microRNA mimics.

Chorn G, Klein-McDowell M, Zhao L, Saunders MA, Flanagan WM, Willingham AT, Lim LP.

RNA. 2012 Oct;18(10):1796-804. doi: 10.1261/rna.031278.111. Epub 2012 Aug 21.


A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms.

Ponnapalli SP, Saunders MA, Van Loan CF, Alter O.

PLoS One. 2011;6(12):e28072. doi: 10.1371/journal.pone.0028072. Epub 2011 Dec 22.


A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks.

Fleming RM, Maes CM, Saunders MA, Ye Y, Palsson BØ.

J Theor Biol. 2012 Jan 7;292:71-7. doi: 10.1016/j.jtbi.2011.09.029. Epub 2011 Oct 5.


(micro)Genomic medicine: microRNAs as therapeutics and biomarkers.

Saunders MA, Lim LP.

RNA Biol. 2009 Jul-Aug;6(3):324-8. Epub 2009 Jul 29. Review.


Identification of SULF2 as a novel transcriptional target of p53 by use of integrated genomic analyses.

Chau BN, Diaz RL, Saunders MA, Cheng C, Chang AN, Warrener P, Bradshaw J, Linsley PS, Cleary MA.

Cancer Res. 2009 Feb 15;69(4):1368-74. doi: 10.1158/0008-5472.CAN-08-2742. Epub 2009 Feb 3.


Large contribution of sea surface warming to recent increase in Atlantic hurricane activity.

Saunders MA, Lea AS.

Nature. 2008 Jan 31;451(7178):557-60. doi: 10.1038/nature06422.


Human polymorphism at microRNAs and microRNA target sites.

Saunders MA, Liang H, Li WH.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3300-5. Epub 2007 Feb 20.


Human adaptive evolution at Myostatin (GDF8), a regulator of muscle growth.

Saunders MA, Good JM, Lawrence EC, Ferrell RE, Li WH, Nachman MW.

Am J Hum Genet. 2006 Dec;79(6):1089-97. Epub 2006 Oct 10.


Transposable element orientation bias in the Drosophila melanogaster genome.

Cutter AD, Good JM, Pappas CT, Saunders MA, Starrett DM, Wheeler TJ.

J Mol Evol. 2005 Dec;61(6):733-41. Epub 2005 Nov 2.


News and views: the chimpanzee and us.

Li WH, Saunders MA.

Nature. 2005 Sep 1;437(7055):50-1. No abstract available.


The extent of linkage disequilibrium caused by selection on G6PD in humans.

Saunders MA, Slatkin M, Garner C, Hammer MF, Nachman MW.

Genetics. 2005 Nov;171(3):1219-29. Epub 2005 Jul 14.


Seasonal prediction of hurricane activity reaching the coast of the United States.

Saunders MA, Lea AS.

Nature. 2005 Apr 21;434(7036):1005-8.


Gunshot injuries to the extremities: experience of a U.K. trauma centre.

Persad IJ, Reddy RS, Saunders MA, Patel J.

Injury. 2005 Mar;36(3):407-11.


Nucleotide variability at G6pd and the signature of malarial selection in humans.

Saunders MA, Hammer MF, Nachman MW.

Genetics. 2002 Dec;162(4):1849-61.


Obligatory role of cyclic adenosine monophosphate response element in cyclooxygenase-2 promoter induction and feedback regulation by inflammatory mediators.

Schroer K, Zhu Y, Saunders MA, Deng WG, Xu XM, Meyer-Kirchrath J, Wu KK.

Circulation. 2002 Jun 11;105(23):2760-5.


Dynamic regulation of cyclooxygenase-2 promoter activity by isoforms of CCAAT/enhancer-binding proteins.

Zhu Y, Saunders MA, Yeh H, Deng WG, Wu KK.

J Biol Chem. 2002 Mar 1;277(9):6923-8. Epub 2001 Dec 10.


COX-2 expression and cell cycle progression in human fibroblasts.

Gilroy DW, Saunders MA, Wu KK.

Am J Physiol Cell Physiol. 2001 Jul;281(1):C188-94.


Cell cycle-dependent expression of cyclooxygenase-2 in human fibroblasts.

Gilroy DW, Saunders MA, Sansores-Garcia L, Matijevic-Aleksic N, Wu KK.

FASEB J. 2001 Feb;15(2):288-90. Epub 2000 Dec 8.


Dynamics and phylogenetic implications of MtDNA control region sequences in New World Jays (Aves: Corvidae).

Saunders MA, Edwards SV.

J Mol Evol. 2000 Aug;51(2):97-109. Erratum in: J Mol Evol 2001 Aug;53(2):163.


Mechanisms of prostaglandin E2 release by intact cells expressing cyclooxygenase-2: evidence for a 'two-component' model.

Saunders MA, Belvisi MG, Cirino G, Barnes PJ, Warner TD, Mitchell JA.

J Pharmacol Exp Ther. 1999 Mar;288(3):1101-6.


Induction of cyclo-oxygenase-2 by cytokines in human cultured airway smooth muscle cells: novel inflammatory role of this cell type.

Belvisi MG, Saunders MA, Haddad el-B, Hirst SJ, Yacoub MH, Barnes PJ, Mitchell JA.

Br J Pharmacol. 1997 Mar;120(5):910-6.

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