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Items: 13

1.

Strelka2: fast and accurate calling of germline and somatic variants.

Kim S, Scheffler K, Halpern AL, Bekritsky MA, Noh E, Källberg M, Chen X, Kim Y, Beyter D, Krusche P, Saunders CT.

Nat Methods. 2018 Aug;15(8):591-594. doi: 10.1038/s41592-018-0051-x. Epub 2018 Jul 16.

PMID:
30013048
2.

Acute Kidney Injury and Subsequent Frailty Status in Survivors of Critical Illness: A Secondary Analysis.

Abdel-Kader K, Girard TD, Brummel NE, Saunders CT, Blume JD, Clark AJ, Vincz AJ, Ely EW, Jackson JC, Bell SP, Archer KR, Ikizler TA, Pandharipande PP, Siew ED.

Crit Care Med. 2018 May;46(5):e380-e388. doi: 10.1097/CCM.0000000000003003.

PMID:
29373362
3.

A classical regression framework for mediation analysis: fitting one model to estimate mediation effects.

Saunders CT, Blume JD.

Biostatistics. 2018 Oct 1;19(4):514-528. doi: 10.1093/biostatistics/kxx054.

4.

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.

Chen X, Schulz-Trieglaff O, Shaw R, Barnes B, Schlesinger F, Källberg M, Cox AJ, Kruglyak S, Saunders CT.

Bioinformatics. 2016 Apr 15;32(8):1220-2. doi: 10.1093/bioinformatics/btv710. Epub 2015 Dec 8.

PMID:
26647377
5.

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.

Raczy C, Petrovski R, Saunders CT, Chorny I, Kruglyak S, Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao A, Little KM, Strömberg MP, Tanner SW.

Bioinformatics. 2013 Aug 15;29(16):2041-3. doi: 10.1093/bioinformatics/btt314. Epub 2013 Jun 4.

PMID:
23736529
6.

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs.

Saunders CT, Wong WS, Swamy S, Becq J, Murray LJ, Cheetham RK.

Bioinformatics. 2012 Jul 15;28(14):1811-7. doi: 10.1093/bioinformatics/bts271. Epub 2012 May 10.

PMID:
22581179
7.

Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection.

Saunders CT, Green P.

Mol Biol Evol. 2007 Dec;24(12):2632-47. Epub 2007 Sep 28.

PMID:
17906001
8.

Recapitulation of protein family divergence using flexible backbone protein design.

Saunders CT, Baker D.

J Mol Biol. 2005 Feb 18;346(2):631-44. Epub 2005 Jan 8.

PMID:
15670610
9.

Risks and complications of prolonged parenteral antibiotic treatment in children with acute osteoarticular infections.

Ceroni D, Regusci M, Pazos JM, Saunders CT, Kaelin A.

Acta Orthop Belg. 2003 Oct;69(5):400-4.

PMID:
14648948
10.

Evaluation of structural and evolutionary contributions to deleterious mutation prediction.

Saunders CT, Baker D.

J Mol Biol. 2002 Sep 27;322(4):891-901.

PMID:
12270722
11.

Danger of amiodarone therapy and elevated inspired oxygen concentrations in mice.

Donica SK, Paulsen AW, Simpson BR, Ramsay MA, Saunders CT, Swygert TH, Tappe J.

Am J Cardiol. 1996 Jan 1;77(1):109-10.

PMID:
8540449
12.

Right ventricular dysfunction during cardiac transplantation: an essential role for transesophageal echocardiography.

Donica SK, Saunders CT, Ramsay MA.

J Cardiothorac Vasc Anesth. 1992 Dec;6(6):775-6. No abstract available.

PMID:
1472682
13.

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