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Items: 1 to 50 of 59

1.

Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.

Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, Robb SMC, Baker C, Eichler EE, Hockman D, Sauka-Spengler T, Yandell M, Krumlauf R, Elgar G, Amemiya CT.

Nat Genet. 2018 May;50(5):768. doi: 10.1038/s41588-018-0075-2.

PMID:
29674745
2.

Generation of a double binary transgenic zebrafish model to study myeloid gene regulation in response to oncogene activation in melanocytes.

Kenyon A, Gavriouchkina D, Zorman J, Chong-Morrison V, Napolitani G, Cerundolo V, Sauka-Spengler T.

Dis Model Mech. 2018 Apr 6;11(4). pii: dmm030056. doi: 10.1242/dmm.030056.

3.

Genome and epigenome engineering CRISPR toolkit for in vivo modulation of cis-regulatory interactions and gene expression in the chicken embryo.

Williams RM, Senanayake U, Artibani M, Taylor G, Wells D, Ahmed AA, Sauka-Spengler T.

Development. 2018 Feb 23;145(4). pii: dev160333. doi: 10.1242/dev.160333.

PMID:
29386245
4.

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.

Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, Robb SMC, Baker C, Eichler EE, Hockman D, Sauka-Spengler T, Yandell M, Krumlauf R, Elgar G, Amemiya CT.

Nat Genet. 2018 Feb;50(2):270-277. doi: 10.1038/s41588-017-0036-1. Epub 2018 Jan 22. Erratum in: Nat Genet. 2018 Apr 19;:.

PMID:
29358652
5.

Active nuclear transcriptome analysis reveals inflammasome-dependent mechanism for early neutrophil response to Mycobacterium marinum.

Kenyon A, Gavriouchkina D, Zorman J, Napolitani G, Cerundolo V, Sauka-Spengler T.

Sci Rep. 2017 Jul 26;7(1):6505. doi: 10.1038/s41598-017-06099-x.

6.

BRG1-SWI/SNF-dependent regulation of the Wt1 transcriptional landscape mediates epicardial activity during heart development and disease.

Vieira JM, Howard S, Villa Del Campo C, Bollini S, Dubé KN, Masters M, Barnette DN, Rohling M, Sun X, Hankins LE, Gavriouchkina D, Williams R, Metzger D, Chambon P, Sauka-Spengler T, Davies B, Riley PR.

Nat Commun. 2017 Jul 24;8:16034. doi: 10.1038/ncomms16034.

7.

Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome.

Trinh LA, Chong-Morrison V, Gavriouchkina D, Hochgreb-Hägele T, Senanayake U, Fraser SE, Sauka-Spengler T.

Cell Rep. 2017 Apr 11;19(2):425-440. doi: 10.1016/j.celrep.2017.03.045.

8.

Translation reprogramming is an evolutionarily conserved driver of phenotypic plasticity and therapeutic resistance in melanoma.

Falletta P, Sanchez-Del-Campo L, Chauhan J, Effern M, Kenyon A, Kershaw CJ, Siddaway R, Lisle R, Freter R, Daniels MJ, Lu X, Tüting T, Middleton M, Buffa FM, Willis AE, Pavitt G, Ronai ZA, Sauka-Spengler T, Hölzel M, Goding CR.

Genes Dev. 2017 Jan 1;31(1):18-33. doi: 10.1101/gad.290940.116. Epub 2017 Jan 17.

9.

Mapping a multiplexed zoo of mRNA expression.

Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA.

Development. 2016 Oct 1;143(19):3632-3637.

10.

Premalignant SOX2 overexpression in the fallopian tubes of ovarian cancer patients: Discovery and validation studies.

Hellner K, Miranda F, Fotso Chedom D, Herrero-Gonzalez S, Hayden DM, Tearle R, Artibani M, KaramiNejadRanjbar M, Williams R, Gaitskell K, Elorbany S, Xu R, Laios A, Buiga P, Ahmed K, Dhar S, Zhang RY, Campo L, Myers KA, Lozano M, Ruiz-Miró M, Gatius S, Mota A, Moreno-Bueno G, Matias-Guiu X, Benítez J, Witty L, McVean G, Leedham S, Tomlinson I, Drmanac R, Cazier JB, Klein R, Dunne K, Bast RC Jr, Kennedy SH, Hassan B, Lise S, Garcia MJ, Peters BA, Yau C, Sauka-Spengler T, Ahmed AA.

EBioMedicine. 2016 Aug;10:137-49. doi: 10.1016/j.ebiom.2016.06.048. Epub 2016 Jul 2.

11.

Genetic dissection of the α-globin super-enhancer in vivo.

Hay D, Hughes JR, Babbs C, Davies JOJ, Graham BJ, Hanssen L, Kassouf MT, Marieke Oudelaar AM, Sharpe JA, Suciu MC, Telenius J, Williams R, Rode C, Li PS, Pennacchio LA, Sloane-Stanley JA, Ayyub H, Butler S, Sauka-Spengler T, Gibbons RJ, Smith AJH, Wood WG, Higgs DR.

Nat Genet. 2016 Aug;48(8):895-903. doi: 10.1038/ng.3605. Epub 2016 Jul 4.

12.

Active DNA demethylation at enhancers during the vertebrate phylotypic period.

Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R.

Nat Genet. 2016 Apr;48(4):417-26. doi: 10.1038/ng.3522. Epub 2016 Feb 29.

13.

A novel TGFβ modulator that uncouples R-Smad/I-Smad-mediated negative feedback from R-Smad/ligand-driven positive feedback.

Gu W, Monteiro R, Zuo J, Simões FC, Martella A, Andrieu-Soler C, Grosveld F, Sauka-Spengler T, Patient R.

PLoS Biol. 2015 Feb 9;13(2):e1002051. doi: 10.1371/journal.pbio.1002051. eCollection 2015 Feb.

14.

Evolutionarily conserved role for SoxC genes in neural crest specification and neuronal differentiation.

Uy BR, Simoes-Costa M, Koo DE, Sauka-Spengler T, Bronner ME.

Dev Biol. 2015 Jan 15;397(2):282-92. doi: 10.1016/j.ydbio.2014.09.022. Epub 2014 Oct 5.

15.

Understanding functional miRNA-target interactions in vivo by site-specific genome engineering.

Bassett AR, Azzam G, Wheatley L, Tibbit C, Rajakumar T, McGowan S, Stanger N, Ewels PA, Taylor S, Ponting CP, Liu JL, Sauka-Spengler T, Fulga TA.

Nat Commun. 2014 Aug 19;5:4640. doi: 10.1038/ncomms5640.

16.

A fate-map for cranial sensory ganglia in the sea lamprey.

Modrell MS, Hockman D, Uy B, Buckley D, Sauka-Spengler T, Bronner ME, Baker CV.

Dev Biol. 2014 Jan 15;385(2):405-16.

17.

Expression and function of transcription factor cMyb during cranial neural crest development.

Betancur P, Simões-Costa M, Sauka-Spengler T, Bronner ME.

Mech Dev. 2014 May;132:38-43. doi: 10.1016/j.mod.2014.01.005. Epub 2014 Feb 6.

18.

A reporter assay in lamprey embryos reveals both functional conservation and elaboration of vertebrate enhancers.

Parker HJ, Sauka-Spengler T, Bronner M, Elgar G.

PLoS One. 2014 Jan 9;9(1):e85492. doi: 10.1371/journal.pone.0085492. eCollection 2014.

19.

Transcriptome analysis reveals novel players in the cranial neural crest gene regulatory network.

Simões-Costa M, Tan-Cabugao J, Antoshechkin I, Sauka-Spengler T, Bronner ME.

Genome Res. 2014 Feb;24(2):281-90. doi: 10.1101/gr.161182.113. Epub 2014 Jan 3.

20.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

21.

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.

22.

Dynamic and differential regulation of stem cell factor FoxD3 in the neural crest is Encrypted in the genome.

Simões-Costa MS, McKeown SJ, Tan-Cabugao J, Sauka-Spengler T, Bronner ME.

PLoS Genet. 2012;8(12):e1003142. doi: 10.1371/journal.pgen.1003142. Epub 2012 Dec 20.

23.

DNA methyltransferase3A as a molecular switch mediating the neural tube-to-neural crest fate transition.

Hu N, Strobl-Mazzulla P, Sauka-Spengler T, Bronner ME.

Genes Dev. 2012 Nov 1;26(21):2380-5. doi: 10.1101/gad.198747.112.

24.

Expression of Sox family genes in early lamprey development.

Uy BR, Simoes-Costa M, Sauka-Spengler T, Bronner ME.

Int J Dev Biol. 2012;56(5):377-83. doi: 10.1387/ijdb.113416bu.

25.

Induction of the neural crest state: control of stem cell attributes by gene regulatory, post-transcriptional and epigenetic interactions.

Prasad MS, Sauka-Spengler T, LaBonne C.

Dev Biol. 2012 Jun 1;366(1):10-21. doi: 10.1016/j.ydbio.2012.03.014. Epub 2012 Mar 30. Review.

26.

Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers.

Parker HJ, Piccinelli P, Sauka-Spengler T, Bronner M, Elgar G.

BMC Genomics. 2011 Dec 30;12:637. doi: 10.1186/1471-2164-12-637.

27.

Expression of sympathetic nervous system genes in Lamprey suggests their recruitment for specification of a new vertebrate feature.

Häming D, Simoes-Costa M, Uy B, Valencia J, Sauka-Spengler T, Bronner-Fraser M.

PLoS One. 2011;6(10):e26543. doi: 10.1371/journal.pone.0026543. Epub 2011 Oct 27.

28.

A Sox10 enhancer element common to the otic placode and neural crest is activated by tissue-specific paralogs.

Betancur P, Sauka-Spengler T, Bronner M.

Development. 2011 Sep;138(17):3689-98. doi: 10.1242/dev.057836. Epub 2011 Jul 20.

29.

Snapshot: neural crest.

Sauka-Spengler T, Bronner M.

Cell. 2010 Oct 29;143(3):486-486.e1. doi: 10.1016/j.cell.2010.10.025. No abstract available.

30.

Evidence for the prepattern/cooption model of vertebrate jaw evolution.

Cerny R, Cattell M, Sauka-Spengler T, Bronner-Fraser M, Yu F, Medeiros DM.

Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17262-7. doi: 10.1073/pnas.1009304107. Epub 2010 Sep 20.

31.

Histone demethylase JmjD2A regulates neural crest specification.

Strobl-Mazzulla PH, Sauka-Spengler T, Bronner-Fraser M.

Dev Cell. 2010 Sep 14;19(3):460-8. doi: 10.1016/j.devcel.2010.08.009.

32.

Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution.

Smith JJ, Stuart AB, Sauka-Spengler T, Clifton SW, Amemiya CT.

Chromosoma. 2010 Aug;119(4):381-9. doi: 10.1007/s00412-010-0263-z. Epub 2010 Mar 2.

33.

Immunostaining of whole-mount and sectioned lamprey embryos.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.prot5126. doi: 10.1101/pdb.prot5126.

PMID:
20147021
34.

Whole-mount in situ hybridization on lamprey embryos.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.prot5125. doi: 10.1101/pdb.prot5125.

PMID:
20147020
35.

DiI cell labeling in lamprey embryos.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.prot5124. doi: 10.1101/pdb.prot5124.

PMID:
20147019
36.

Microinjection of RNA and morpholino oligos into lamprey embryos.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.prot5123. doi: 10.1101/pdb.prot5123.

PMID:
20147018
37.

Culturing lamprey embryos.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.prot5122. doi: 10.1101/pdb.prot5122.

PMID:
20147017
38.

The sea lamprey Petromyzon marinus: a model for evolutionary and developmental biology.

Nikitina N, Bronner-Fraser M, Sauka-Spengler T.

Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.emo113. doi: 10.1101/pdb.emo113.

PMID:
20147008
39.

Genomic code for Sox10 activation reveals a key regulatory enhancer for cranial neural crest.

Betancur P, Bronner-Fraser M, Sauka-Spengler T.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3570-5. doi: 10.1073/pnas.0906596107. Epub 2010 Feb 5.

40.

Assembling neural crest regulatory circuits into a gene regulatory network.

Betancur P, Bronner-Fraser M, Sauka-Spengler T.

Annu Rev Cell Dev Biol. 2010;26:581-603. doi: 10.1146/annurev.cellbio.042308.113245. Review.

41.

Chapter 1. Gene regulatory networks in neural crest development and evolution.

Nikitina N, Sauka-Spengler T, Bronner-Fraser M.

Curr Top Dev Biol. 2009;86:1-14. doi: 10.1016/S0070-2153(09)01001-1. Review.

PMID:
19361687
42.

Dissecting early regulatory relationships in the lamprey neural crest gene network.

Nikitina N, Sauka-Spengler T, Bronner-Fraser M.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20083-8. doi: 10.1073/pnas.0806009105. Epub 2008 Dec 22.

43.

Evolution of the neural crest viewed from a gene regulatory perspective.

Sauka-Spengler T, Bronner-Fraser M.

Genesis. 2008 Nov;46(11):673-82. doi: 10.1002/dvg.20436. Review.

PMID:
19003930
44.

Molecular characterization of the gastrula in the turtle Emys orbicularis: an evolutionary perspective on gastrulation.

Coolen M, Nicolle D, Plouhinec JL, Gombault A, Sauka-Spengler T, Menuet A, Pieau C, Mazan S.

PLoS One. 2008 Jul 16;3(7):e2676. doi: 10.1371/journal.pone.0002676.

45.

Insights from a sea lamprey into the evolution of neural crest gene regulatory network.

Sauka-Spengler T, Bronner-Fraser M.

Biol Bull. 2008 Jun;214(3):303-14. Review.

PMID:
18574106
46.

The amphioxus genome and the evolution of the chordate karyotype.

Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS.

Nature. 2008 Jun 19;453(7198):1064-71. doi: 10.1038/nature06967.

PMID:
18563158
47.

A gene regulatory network orchestrates neural crest formation.

Sauka-Spengler T, Bronner-Fraser M.

Nat Rev Mol Cell Biol. 2008 Jul;9(7):557-68. doi: 10.1038/nrm2428. Epub 2008 Jun 4. Review.

PMID:
18523435
48.

Gain- and loss-of-function approaches in the chick embryo.

Sauka-Spengler T, Barembaum M.

Methods Cell Biol. 2008;87:237-56. doi: 10.1016/S0091-679X(08)00212-4. Review.

PMID:
18485300
49.

Ancient evolutionary origin of the neural crest gene regulatory network.

Sauka-Spengler T, Meulemans D, Jones M, Bronner-Fraser M.

Dev Cell. 2007 Sep;13(3):405-20.

50.

Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan.

Coolen M, Sauka-Spengler T, Nicolle D, Le-Mentec C, Lallemand Y, Da Silva C, Plouhinec JL, Robert B, Wincker P, Shi DL, Mazan S.

PLoS One. 2007 Apr 18;2(4):e374.

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