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Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure.

Dunlop AL, Knight AK, Satten GA, Cutler AJ, Wright ML, Mitchell RM, Read TD, Mulle J, Hertzberg VS, Hill CC, Smith AK, Corwin EJ.

PeerJ. 2019 Nov 21;7:e8004. doi: 10.7717/peerj.8004. eCollection 2019.


Multisample adjusted U-statistics that account for confounding covariates.

Satten GA, Kong M, Datta S.

Stat Med. 2018 Oct 15;37(23):3357-3372. doi: 10.1002/sim.7825. Epub 2018 Jun 19.


Robust inference of population structure from next-generation sequencing data with systematic differences in sequencing.

Liao P, Satten GA, Hu YJ.

Bioinformatics. 2018 Apr 1;34(7):1157-1163. doi: 10.1093/bioinformatics/btx708.


Changes in vaginal community state types reflect major shifts in the microbiome.

Brooks JP, Buck GA, Chen G, Diao L, Edwards DJ, Fettweis JM, Huzurbazar S, Rakitin A, Satten GA, Smirnova E, Waks Z, Wright ML, Yanover C, Zhou YH.

Microb Ecol Health Dis. 2017 Apr 10;28(1):1303265. doi: 10.1080/16512235.2017.1303265. eCollection 2017.


PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.

Liao P, Satten GA, Hu YJ.

Genet Epidemiol. 2017 Jul;41(5):375-387. doi: 10.1002/gepi.22048. Epub 2017 May 31.


Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome.

Satten GA, Tyx RE, Rivera AJ, Stanfill S.

PLoS One. 2017 Jan 13;12(1):e0168131. doi: 10.1371/journal.pone.0168131. eCollection 2017.


Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease.

Shaw KA, Bertha M, Hofmekler T, Chopra P, Vatanen T, Srivatsa A, Prince J, Kumar A, Sauer C, Zwick ME, Satten GA, Kostic AD, Mulle JG, Xavier RJ, Kugathasan S.

Genome Med. 2016 Jul 13;8(1):75. doi: 10.1186/s13073-016-0331-y.


Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls.

Hu YJ, Liao P, Johnston HR, Allen AS, Satten GA.

PLoS Genet. 2016 May 6;12(5):e1006040. doi: 10.1371/journal.pgen.1006040. eCollection 2016 May.


Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis.

Tyx RE, Stanfill SB, Keong LM, Rivera AJ, Satten GA, Watson CH.

PLoS One. 2016 Jan 19;11(1):e0146939. doi: 10.1371/journal.pone.0146939. eCollection 2016.


Impact of the 5As brief counseling on smoking cessation among pregnant clients of Special Supplemental Nutrition Program for Women, Infants, and Children (WIC) clinics in Ohio.

Olaiya O, Sharma AJ, Tong VT, Dee D, Quinn C, Agaku IT, Conrey EJ, Kuiper NM, Satten GA.

Prev Med. 2015 Dec;81:438-43. doi: 10.1016/j.ypmed.2015.10.011. Epub 2015 Oct 31.


A statistical approach for rare-variant association testing in affected sibships.

Epstein MP, Duncan R, Ware EB, Jhun MA, Bielak LF, Zhao W, Smith JA, Peyser PA, Kardia SL, Satten GA.

Am J Hum Genet. 2015 Apr 2;96(4):543-54. doi: 10.1016/j.ajhg.2015.01.020. Epub 2015 Mar 19.


Genetic Analysis Workshop 18: Methods and strategies for analyzing human sequence and phenotype data in members of extended pedigrees.

Bickeböller H, Bailey JN, Beyene J, Cantor RM, Cordell HJ, Culverhouse RC, Engelman CD, Fardo DW, Ghosh S, König IR, Lorenzo Bermejo J, Melton PE, Santorico SA, Satten GA, Sun L, Tintle NL, Ziegler A, MacCluer JW, Almasy L.

BMC Proc. 2014 Jun 17;8(Suppl 1):S1. doi: 10.1186/1753-6561-8-S1-S1. eCollection 2014.


Heavy metals, organic solvents, and multiple sclerosis: An exploratory look at gene-environment interactions.

Napier MD, Poole C, Satten GA, Ashley-Koch A, Marrie RA, Williamson DM.

Arch Environ Occup Health. 2016;71(1):26-34. doi: 10.1080/19338244.2014.937381. Epub 2014 Aug 19.


Population-based association and gene by environment interactions in Genetic Analysis Workshop 18.

Satten GA, Biswas S, Papachristou C, Turkmen A, König IR.

Genet Epidemiol. 2014 Sep;38 Suppl 1:S49-56. doi: 10.1002/gepi.21825.


Utilizing population controls in rare-variant case-parent association tests.

Jiang Y, Satten GA, Han Y, Epstein MP, Heinzen EL, Goldstein DB, Allen AS.

Am J Hum Genet. 2014 Jun 5;94(6):845-53. doi: 10.1016/j.ajhg.2014.04.014. Epub 2014 May 15.


Robust regression analysis of copy number variation data based on a univariate score.

Satten GA, Allen AS, Ikeda M, Mulle JG, Warren ST.

PLoS One. 2014 Feb 7;9(2):e86272. doi: 10.1371/journal.pone.0086272. eCollection 2014.


Interaction of HLA-DRB1*1501 and TNF-Alpha in a Population-based Case-control Study of Multiple Sclerosis.

Williamson DM, Marrie RA, Ashley-Koch A, Satten GA.

Immunol Infect Dis. 2013 Sep;1(1):10-17.


Effects of maternal smokeless tobacco use on selected pregnancy outcomes in Alaska Native women: a case-control study.

England LJ, Kim SY, Shapiro-Mendoza CK, Wilson HG, Kendrick JS, Satten GA, Lewis CA, Tucker MJ, Callaghan WM.

Acta Obstet Gynecol Scand. 2013 Jun;92(6):648-55. doi: 10.1111/aogs.12124. Epub 2013 Mar 29.


A permutation procedure to correct for confounders in case-control studies, including tests of rare variation.

Epstein MP, Duncan R, Jiang Y, Conneely KN, Allen AS, Satten GA.

Am J Hum Genet. 2012 Aug 10;91(2):215-23. doi: 10.1016/j.ajhg.2012.06.004. Epub 2012 Jul 19.


Stratification-score matching improves correction for confounding by population stratification in case-control association studies.

Epstein MP, Duncan R, Broadaway KA, He M, Allen AS, Satten GA.

Genet Epidemiol. 2012 Apr;36(3):195-205. doi: 10.1002/gepi.21611.


California Very Preterm Birth Study: design and characteristics of the population- and biospecimen bank-based nested case-control study.

Kharrazi M, Pearl M, Yang J, DeLorenze GN, Bean CJ, Callaghan WM, Grant A, Lackritz E, Romero R, Satten GA, Simhan H, Torres AR, Westover JB, Yolken R, Williamson DM.

Paediatr Perinat Epidemiol. 2012 May;26(3):250-63. doi: 10.1111/j.1365-3016.2011.01252.x. Epub 2012 Jan 31.


A weighted accumulation test for associating rare genetic variation with quantitative phenotypes.

Xing C, Satten GA, Allen AS.

BMC Proc. 2011 Nov 29;5 Suppl 9:S6. doi: 10.1186/1753-6561-5-S9-S6.


Age-associated DNA methylation in pediatric populations.

Alisch RS, Barwick BG, Chopra P, Myrick LK, Satten GA, Conneely KN, Warren ST.

Genome Res. 2012 Apr;22(4):623-32. doi: 10.1101/gr.125187.111. Epub 2012 Feb 1.


Maternal smokeless tobacco use in Alaska Native women and singleton infant birth size.

England LJ, Kim SY, Shapiro-Mendoza CK, Wilson HG, Kendrick JS, Satten GA, Lewis CA, Whittern P, Tucker MJ, Callaghan WM.

Acta Obstet Gynecol Scand. 2012 Jan;91(1):93-103. doi: 10.1111/j.1600-0412.2011.01273.x. Epub 2011 Oct 17.


Control for confounding in case-control studies using the stratification score, a retrospective balancing score.

Allen AS, Satten GA.

Am J Epidemiol. 2011 Apr 1;173(7):752-60. doi: 10.1093/aje/kwq406. Epub 2011 Mar 14.


Fast and robust association tests for untyped SNPs in case-control studies.

Allen AS, Satten GA, Bray SL, Dudbridge F, Epstein MP.

Hum Hered. 2010;70(3):167-76. doi: 10.1159/000308456. Epub 2010 Jul 30.


Percentage of gestational diabetes mellitus attributable to overweight and obesity.

Kim SY, England L, Wilson HG, Bish C, Satten GA, Dietz P.

Am J Public Health. 2010 Jun;100(6):1047-52. doi: 10.2105/AJPH.2009.172890. Epub 2010 Apr 15.


Late preterm birth and risk of developing asthma.

Abe K, Shapiro-Mendoza CK, Hall LR, Satten GA.

J Pediatr. 2010 Jul;157(1):74-8. doi: 10.1016/j.jpeds.2010.01.008. Epub 2010 Mar 24.


SNPs in CAST are associated with Parkinson disease: a confirmation study.

Allen AS, Satten GA.

Am J Med Genet B Neuropsychiatr Genet. 2010 Jun 5;153B(4):973-9. doi: 10.1002/ajmg.b.31061.


Score-based adjustment for confounding by population stratification in genetic association studies.

Allen A, Epstein MP, Satten GA.

Genet Epidemiol. 2010 Jul;34(5):383-5. doi: 10.1002/gepi.20487. No abstract available.


A regression-based association test for case-control studies that uses inferred ancestral haplotype similarity.

Liu Y, Li YJ, Satten GA, Allen AS, Tzeng JY.

Ann Hum Genet. 2009 Sep;73(Pt 5):520-6. doi: 10.1111/j.1469-1809.2009.00536.x. Epub 2009 Jul 20.


MALDI-TOF mass spectrometry as a tool for differentiation of invasive and noninvasive Streptococcus pyogenes isolates.

Moura H, Woolfitt AR, Carvalho MG, Pavlopoulos A, Teixeira LM, Satten GA, Barr JR.

FEMS Immunol Med Microbiol. 2008 Aug;53(3):333-42. doi: 10.1111/j.1574-695X.2008.00428.x. Epub 2008 Jun 5.


Association mapping via a class of haplotype-sharing statistics.

Allen AS, Satten GA.

BMC Proc. 2007;1 Suppl 1:S123. Epub 2007 Dec 18.


A signed-rank test for clustered data.

Datta S, Satten GA.

Biometrics. 2008 Jun;64(2):501-7. Epub 2007 Oct 26.


Robust estimation and testing of haplotype effects in case-control studies.

Allen AS, Satten GA.

Genet Epidemiol. 2008 Jan;32(1):29-40.


Statistical models for haplotype sharing in case-parent trio data.

Allen AS, Satten GA.

Hum Hered. 2007;64(1):35-44. Epub 2007 Apr 27.


A simple and improved correction for population stratification in case-control studies.

Epstein MP, Allen AS, Satten GA.

Am J Hum Genet. 2007 May;80(5):921-30. Epub 2007 Mar 29.


Genetic studies of a cluster of acute lymphoblastic leukemia cases in Churchill County, Nevada.

Steinberg KK, Relling MV, Gallagher ML, Greene CN, Rubin CS, French D, Holmes AK, Carroll WL, Koontz DA, Sampson EJ, Satten GA.

Environ Health Perspect. 2007 Jan;115(1):158-64.


Investigating childhood leukemia in Churchill County, Nevada.

Rubin CS, Holmes AK, Belson MG, Jones RL, Flanders WD, Kieszak SM, Osterloh J, Luber GE, Blount BC, Barr DB, Steinberg KK, Satten GA, McGeehin MA, Todd RL.

Environ Health Perspect. 2007 Jan;115(1):151-7.


Simple methods for assessing haplotype-environment interactions in case-only and case-control studies.

Kwee LC, Epstein MP, Manatunga AK, Duncan R, Allen AS, Satten GA.

Genet Epidemiol. 2007 Jan;31(1):75-90.


Improved association analyses of disease subtypes in case-parent triads.

Epstein MP, Waldman ID, Satten GA.

Genet Epidemiol. 2006 Apr;30(3):209-19.


Robust testing of haplotype/disease association.

Allen AS, Satten GA.

BMC Genet. 2005 Dec 30;6 Suppl 1:S69.


Genetic association analysis using data from triads and unrelated subjects.

Epstein MP, Veal CD, Trembath RC, Barker JN, Li C, Satten GA.

Am J Hum Genet. 2005 Apr;76(4):592-608. Epub 2005 Feb 14.


Comparison of prospective and retrospective methods for haplotype inference in case-control studies.

Satten GA, Epstein MP.

Genet Epidemiol. 2004 Nov;27(3):192-201.


Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens.

Satten GA, Datta S, Moura H, Woolfitt AR, Carvalho Mda G, Carlone GM, De BK, Pavlopoulos A, Barr JR.

Bioinformatics. 2004 Nov 22;20(17):3128-36. Epub 2004 Jun 24.


Bootstrap calibration of TRANSMIT for informative missingness of parental genotype data.

Allen AS, Collins JS, Rathouz PJ, Selander CL, Satten GA.

BMC Genet. 2003 Dec 31;4 Suppl 1:S39.

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