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Items: 1 to 50 of 132

1.

Development of a novel monoclonal antibody that binds to most HLA-A allomorphs in a conformation-dependent yet peptide-promiscuous fashion.

Komatsu T, Shimizu T, Kanoh M, Miyakawa T, Satta Y, Yasukochi Y, Fujimoto R, Tada M, Machida K, Kataoka S, Udaka K.

Immunogenetics. 2020 Jan 22. doi: 10.1007/s00251-020-01154-w. [Epub ahead of print]

PMID:
31970435
2.

Expression Changes of MHC and Other Immune Genes in Frog Skin during Ontogeny.

Lau Q, Igawa T, Komaki S, Satta Y.

Animals (Basel). 2020 Jan 6;10(1). pii: E91. doi: 10.3390/ani10010091.

3.

Two-dimensional site frequency spectrum for detecting, classifying and dating incomplete selective sweeps.

Satta Y, Zheng W, Nishiyama KV, Iwasaki RL, Hayakawa T, Fujito NT, Takahata N.

Genes Genet Syst. 2020 Jan 30;94(6):283-300. doi: 10.1266/ggs.19-00012. Epub 2019 Dec 11.

4.

Expression Changes of Structural Protein Genes May Be Related to Adaptive Skin Characteristics Specific to Humans.

Arakawa N, Utsumi D, Takahashi K, Matsumoto-Oda A, Nyachieo A, Chai D, Jillani N, Imai H, Satta Y, Terai Y.

Genome Biol Evol. 2019 Mar 1;11(3):613-628. doi: 10.1093/gbe/evz007.

5.

A new inference method for detecting an ongoing selective sweep.

Fujito NT, Satta Y, Hayakawa T, Takahata N.

Genes Genet Syst. 2018 Nov 10;93(4):149-161. doi: 10.1266/ggs.18-00008. Epub 2018 Sep 30.

6.

Functional Evolution of Avian RIG-I-Like Receptors.

Zheng W, Satta Y.

Genes (Basel). 2018 Sep 12;9(9). pii: E456. doi: 10.3390/genes9090456.

7.

Complex Haplotypes of GSTM1 Gene Deletions Harbor Signatures of a Selective Sweep in East Asian Populations.

Saitou M, Satta Y, Gokcumen O.

G3 (Bethesda). 2018 Aug 30;8(9):2953-2966. doi: 10.1534/g3.118.200462.

8.

Positive selection on schizophrenia-associated ST8SIA2 gene in post-glacial Asia.

Fujito NT, Satta Y, Hane M, Matsui A, Yashima K, Kitajima K, Sato C, Takahata N, Hayakawa T.

PLoS One. 2018 Jul 25;13(7):e0200278. doi: 10.1371/journal.pone.0200278. eCollection 2018.

9.

Selective constraint acting on TLR2 and TLR4 genes of Japanese Rana frogs.

Lau Q, Igawa T, Kosch TA, Satta Y.

PeerJ. 2018 May 25;6:e4842. doi: 10.7717/peerj.4842. eCollection 2018.

10.

Nonequilibrium Neutral Theory for Hitchhikers.

Satta Y, Fujito NT, Takahata N.

Mol Biol Evol. 2018 Jun 1;35(6):1362-1365. doi: 10.1093/molbev/msy093.

PMID:
29722819
11.

Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees.

Saitou M, Satta Y, Gokcumen O, Ishida T.

BMC Genomics. 2018 Apr 25;19(1):293. doi: 10.1186/s12864-018-4676-z.

12.

The evolutionary process of mammalian sex determination genes focusing on marsupial SRYs.

Katsura Y, Kondo HX, Ryan J, Harley V, Satta Y.

BMC Evol Biol. 2018 Jan 16;18(1):3. doi: 10.1186/s12862-018-1119-z.

13.
14.

Coevolution of Siglec-11 and Siglec-16 via gene conversion in primates.

Hayakawa T, Khedri Z, Schwarz F, Landig C, Liang SY, Yu H, Chen X, Fujito NT, Satta Y, Varki A, Angata T.

BMC Evol Biol. 2017 Nov 23;17(1):228. doi: 10.1186/s12862-017-1075-z.

15.

An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression.

Akiyama T, Katsumura T, Nakagome S, Lee SI, Joh K, Soejima H, Fujimoto K, Kimura R, Ishida H, Hanihara T, Yasukouchi A, Satta Y, Higuchi S, Oota H.

PLoS One. 2017 Jun 26;12(6):e0178373. doi: 10.1371/journal.pone.0178373. eCollection 2017.

16.

Physical contact and carbon transfer between a lichen-forming Trebouxia alga and a novel Alphaproteobacterium.

Kono M, Tanabe H, Ohmura Y, Satta Y, Terai Y.

Microbiology. 2017 May;163(5):678-691. doi: 10.1099/mic.0.000461. Epub 2017 May 24.

PMID:
28535846
17.

Characterization of TRPA channels in the starfish Patiria pectinifera: involvement of thermally activated TRPA1 in thermotaxis in marine planktonic larvae.

Saito S, Hamanaka G, Kawai N, Furukawa R, Gojobori J, Tominaga M, Kaneko H, Satta Y.

Sci Rep. 2017 May 19;7(1):2173. doi: 10.1038/s41598-017-02171-8.

18.

The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.

Dharmayanthi AB, Terai Y, Sulandari S, Zein MS, Akiyama T, Satta Y.

PLoS One. 2017 Apr 5;12(4):e0173147. doi: 10.1371/journal.pone.0173147. eCollection 2017.

19.

Acropora digitifera Encodes the Largest Known Family of Fluorescent Proteins that Has Persisted during the Evolution of Acropora Species.

Takahashi-Kariyazono S, Gojobori J, Satta Y, Sakai K, Terai Y.

Genome Biol Evol. 2016 Dec 5;8(11):3271-3283.

20.

A pre-metazoan origin of the CRK gene family and co-opted signaling network.

Shigeno-Nakazawa Y, Kasai T, Ki S, Kostyanovskaya E, Pawlak J, Yamagishi J, Okimoto N, Taiji M, Okada M, Westbrook J, Satta Y, Kigawa T, Imamoto A.

Sci Rep. 2016 Sep 30;6:34349. doi: 10.1038/srep34349.

21.

Early Duplication of a Single MHC IIB Locus Prior to the Passerine Radiations.

Eimes JA, Lee SI, Townsend AK, Jablonski P, Nishiumi I, Satta Y.

PLoS One. 2016 Sep 22;11(9):e0163456. doi: 10.1371/journal.pone.0163456. eCollection 2016.

22.

Characterisation of major histocompatibility complex class I genes in Japanese Ranidae frogs.

Lau Q, Igawa T, Komaki S, Satta Y.

Immunogenetics. 2016 Nov;68(10):797-806. Epub 2016 Jul 14.

23.

Genetic diversity of fluorescent protein genes generated by gene duplication and alternative splicing in reef-building corals.

Takahashi-Kariyazono S, Satta Y, Terai Y.

Zoological Lett. 2015 Jul 21;1:23. doi: 10.1186/s40851-015-0020-5. eCollection 2015.

24.

A limit to the divergent allele advantage model supported by variable pathogen recognition across HLA-DRB1 allele lineages.

Lau Q, Yasukochi Y, Satta Y.

Tissue Antigens. 2015 Nov;86(5):343-52. doi: 10.1111/tan.12667. Epub 2015 Sep 22.

25.

Rapid Expansion of Phenylthiocarbamide Non-Tasters among Japanese Macaques.

Suzuki-Hashido N, Hayakawa T, Matsui A, Go Y, Ishimaru Y, Misaka T, Abe K, Hirai H, Satta Y, Imai H.

PLoS One. 2015 Jul 22;10(7):e0132016. doi: 10.1371/journal.pone.0132016. eCollection 2015.

26.
27.

Patterns of evolution of MHC class II genes of crows (Corvus) suggest trans-species polymorphism.

Eimes JA, Townsend AK, Sepil I, Nishiumi I, Satta Y.

PeerJ. 2015 Mar 19;3:e853. doi: 10.7717/peerj.853. eCollection 2015.

28.

Structural basis for the specific recognition of the major antigenic peptide from the Japanese cedar pollen allergen Cry j 1 by HLA-DP5.

Kusano S, Kukimoto-Niino M, Satta Y, Ohsawa N, Uchikubo-Kamo T, Wakiyama M, Ikeda M, Terada T, Yamamoto K, Nishimura Y, Shirouzu M, Sasazuki T, Yokoyama S.

J Mol Biol. 2014 Aug 26;426(17):3016-27. doi: 10.1016/j.jmb.2014.06.020. Epub 2014 Jul 11.

29.

Substrate-dependent evolution of cytochrome P450: rapid turnover of the detoxification-type and conservation of the biosynthesis-type.

Kawashima A, Satta Y.

PLoS One. 2014 Jun 30;9(6):e100059. doi: 10.1371/journal.pone.0100059. eCollection 2014.

30.

A human-specific allelic group of the MHC DRB1 gene in primates.

Yasukochi Y, Satta Y.

J Physiol Anthropol. 2014 Jun 13;33:14. doi: 10.1186/1880-6805-33-14.

31.

Multiple episodic evolution events in V1R receptor genes of East-African cichlids.

Nikaido M, Ota T, Hirata T, Suzuki H, Satta Y, Aibara M, Mzighani SI, Sturmbauer C, Hagino-Yamagishi K, Okada N.

Genome Biol Evol. 2014 May 6;6(5):1135-44. doi: 10.1093/gbe/evu086.

32.

Nonsynonymous substitution rate heterogeneity in the peptide-binding region among different HLA-DRB1 lineages in humans.

Yasukochi Y, Satta Y.

G3 (Bethesda). 2014 May 2;4(7):1217-26. doi: 10.1534/g3.114.011726.

33.

In vivo function and evolution of the eutherian-specific pluripotency marker UTF1.

Nishimoto M, Katano M, Yamagishi T, Hishida T, Kamon M, Suzuki A, Hirasaki M, Nabeshima Y, Nabeshima Y, Katsura Y, Satta Y, Deakin JE, Graves JA, Kuroki Y, Ono R, Ishino F, Ema M, Takahashi S, Kato H, Okuda A.

PLoS One. 2013 Jul 9;8(7):e68119. doi: 10.1371/journal.pone.0068119. Print 2013.

34.

Current perspectives on the intensity of natural selection of MHC loci.

Yasukochi Y, Satta Y.

Immunogenetics. 2013 Jun;65(6):479-83. doi: 10.1007/s00251-013-0693-x. Epub 2013 Apr 3.

35.

MHC class II DQB diversity in the Japanese black bear, Ursus thibetanus japonicus.

Yasukochi Y, Kurosaki T, Yoneda M, Koike H, Satta Y.

BMC Evol Biol. 2012 Nov 29;12:230. doi: 10.1186/1471-2148-12-230.

36.

No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes.

Katsura Y, Satta Y.

PLoS One. 2012;7(10):e45488. doi: 10.1371/journal.pone.0045488. Epub 2012 Oct 19. Erratum in: PLoS One. 2014;9(5):e97169.

37.

Evolution of genomic structures on Mammalian sex chromosomes.

Katsura Y, Iwase M, Satta Y.

Curr Genomics. 2012 Apr;13(2):115-23.

38.

Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes.

Hara Y, Imanishi T, Satta Y.

Genome Biol Evol. 2012;4(11):1133-45. doi: 10.1093/gbe/evs075.

39.

Genomic structure and evolution of multigene families: "flowers" on the human genome.

Kim HL, Iwase M, Igawa T, Nishioka T, Kaneko S, Katsura Y, Takahata N, Satta Y.

Int J Evol Biol. 2012;2012:917678. doi: 10.1155/2012/917678. Epub 2012 Jun 19.

40.

Evolutionary history of the cancer immunity antigen MAGE gene family.

Katsura Y, Satta Y.

PLoS One. 2011;6(6):e20365. doi: 10.1371/journal.pone.0020365. Epub 2011 Jun 10.

41.

Evolution of the CYP2D gene cluster in humans and four non-human primates.

Yasukochi Y, Satta Y.

Genes Genet Syst. 2011;86(2):109-16.

42.

Evolutionary origin of peptidoglycan recognition proteins in vertebrate innate immune system.

MontaƱo AM, Tsujino F, Takahata N, Satta Y.

BMC Evol Biol. 2011 Mar 25;11:79. doi: 10.1186/1471-2148-11-79.

43.

Frequent gene conversion events between the X and Y homologous chromosomal regions in primates.

Iwase M, Satta Y, Hirai H, Hirai Y, Takahata N.

BMC Evol Biol. 2010 Jul 23;10:225. doi: 10.1186/1471-2148-10-225.

44.

Divergence, demography and gene loss along the human lineage.

Kim HL, Igawa T, Kawashima A, Satta Y, Takahata N.

Philos Trans R Soc Lond B Biol Sci. 2010 Aug 27;365(1552):2451-7. doi: 10.1098/rstb.2010.0004.

45.

The origin and genetic variation of domestic chickens with special reference to junglefowls Gallus g. gallus and G. varius.

Sawai H, Kim HL, Kuno K, Suzuki S, Gotoh H, Takada M, Takahata N, Satta Y, Akishinonomiya F.

PLoS One. 2010 May 19;5(5):e10639. doi: 10.1371/journal.pone.0010639.

46.

Natural selection in the TLR-related genes in the course of primate evolution.

Nakajima T, Ohtani H, Satta Y, Uno Y, Akari H, Ishida T, Kimura A.

Immunogenetics. 2008 Dec;60(12):727-35. doi: 10.1007/s00251-008-0332-0. Epub 2008 Sep 23.

PMID:
18810425
47.

Preservation of a pseudogene by gene conversion and diversifying selection.

Takuno S, Nishio T, Satta Y, Innan H.

Genetics. 2008 Sep;180(1):517-31. doi: 10.1534/genetics.108.091918. Epub 2008 Aug 30.

48.

On the origin and function of an insertion element VPaI-1 specific to post-1995 pandemic Vibrio parahaemolyticus strains.

Nishioka T, Kamruzzaman M, Nishibuchi M, Satta Y.

Genes Genet Syst. 2008 Apr;83(2):101-10.

49.

Biological implication for loss of function at major histocompatibility complex loci.

Sawai H, Go Y, Satta Y.

Immunogenetics. 2008 Jun;60(6):295-302. doi: 10.1007/s00251-008-0291-5. Epub 2008 May 7.

PMID:
18461313
50.

Population genetic analysis of the N-acylsphingosine amidohydrolase gene associated with mental activity in humans.

Kim HL, Satta Y.

Genetics. 2008 Mar;178(3):1505-15. doi: 10.1534/genetics.107.083691. Epub 2008 Feb 1.

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